IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
337	 66.54	0	360252..361040	-	262	87198363	-	Saro_0338	-	precorrin-3 methyltransferase
338	 64.77	0	361037..361774	-	245	87198364	-	Saro_0339	-	precorrin-2 C20-methyltransferase
339	 66.83	0	361771..362400	-	209	87198365	cobH	Saro_0340	-	precorrin-8X methylmutase
340	 68.24	0	362400..363545	-	381	87198366	-	Saro_0341	-	precorrin-3B synthase
341	 67.49	0	363542..366826	-	1094	87198367	cobN	Saro_0342	-	cobaltochelatase
342	 65.62	0	366837..367889	-	350	87198368	-	Saro_0343	-	cobalamin biosynthesis CobW
343	 58.78	-2	368386..369501	-	371	87198369	-	Saro_0344	-	high-affinity nickel-transporter
344	 58.91	-1	369514..371550	-	678	87198370	-	Saro_0345	-	TonB-dependent receptor
345	 61.92	-1	372308..373762	+	484	87198371	-	Saro_0346	-	hypothetical protein
346	 61.01	-1	373704..374039	-	111	87198372	-	Saro_0347	-	hypothetical protein
347	 63.40	0	374343..375047	+	234	87198373	-	Saro_0348	-	hypothetical protein
348	 66.13	0	375088..376569	+	493	87198374	-	Saro_0349	-	hypothetical protein
349	 64.73	0	376858..378921	+	687	87198375	-	Saro_0350	-	McrBC 5-methylcytosine restriction system component-like
350	 63.39	0	378931..379908	+	325	87198376	-	Saro_0351	-	hypothetical protein
351	 60.86	-1	379978..385092	+	1704	87198377	-	Saro_0352	-	DEAD/DEAH box helicase-like
352	 64.35	0	385089..387890	+	933	87198378	-	Saro_0353	-	helicase-like
353	 64.34	0	387890..391849	+	1319	87198379	-	Saro_0354	-	putative type II DNA modification enzyme
354	 61.16	-1	391849..392592	+	247	87198380	-	Saro_0355	-	hypothetical protein
355	 57.67	-2	392607..393173	+	188	87198381	-	Saro_0356	-	hypothetical protein
356	 58.88	-2	393322..394233	+	303	87198382	-	Saro_0357	-	Abi-like
357	 62.66	0	394230..395027	+	265	87198383	-	Saro_0358	-	putative restriction endonuclease
358	 66.49	0	395159..396898	-	579	87198384	-	Saro_0359	-	hypothetical protein
359	 66.52	0	397143..397844	-	233	87198385	-	Saro_0360	-	lytic transglycosylase, catalytic
360	 64.56	0	397848..398180	-	110	87198386	-	Saro_0361	-	hypothetical protein
361	 68.39	0	398177..398755	-	192	87198387	-	Saro_0362	-	conjugal transfer protein precursor
362	 67.96	0	398752..399291	-	179	87198388	-	Saro_0363	-	hypothetical protein
363	 65.87	0	399438..400316	-	292	87198389	-	Saro_0364	-	putative replication protein A
364	 66.67	0	400326..400598	-	90	87198390	-	Saro_0365	-	hypothetical protein
365	 67.90	0	400725..401129	-	134	87198391	-	Saro_0366	-	hypothetical protein
366	 60.98	-1	401654..401917	-	87	87198392	-	Saro_0367	-	hypothetical protein
367	 64.50	0	402133..402363	+	76	87198393	-	Saro_0368	-	XRE family transcriptional regulator
368	 62.65	0	402413..402736	-	107	87198394	-	Saro_0369	-	hypothetical protein
369	 63.58	0	402822..403274	-	150	87198395	-	Saro_0370	-	hypothetical protein
370	 63.70	0	403323..403727	-	134	87198396	-	Saro_0371	-	hypothetical protein
371	 63.52	0	403872..404030	-	52	87198397	-	Saro_0372	-	hypothetical protein
372	 61.29	-1	404582..405697	+	371	87198398	-	Saro_0373	-	filamentation induced by cAMP protein Fic
373	 63.39	0	406050..407546	+	498	87198399	-	Saro_0374	-	sulphate transporter
374	 65.59	0	407653..408582	-	309	87198400	-	Saro_0375	-	hypothetical protein
375	 66.28	0	408916..409953	-	345	87198401	-	Saro_0376	-	hypothetical protein
376	 67.56	0	410029..414408	-	1459	87198402	-	Saro_0377	-	putative methylase/helicase
377	 67.03	0	414602..415432	-	276	87198403	-	Saro_0378	-	hypothetical protein
378	 64.35	0	415429..415902	-	157	87198404	-	Saro_0379	-	hypothetical protein
379	 65.50	0	416008..418149	-	713	87198405	-	Saro_0380	-	ParB family protein
380	 68.26	0	418306..419244	-	312	87198406	-	Saro_0381	-	putative ArdC antirestriction protein
381	 64.13	0	419819..420133	-	104	87198407	-	Saro_0382	-	TraR/DksA family transcriptional regulator
382	 66.05	0	420278..421420	+	380	87198408	-	Saro_0383	-	hypothetical protein
383	 62.02	-1	421508..422518	+	336	87198409	-	Saro_0384	-	sodium/calcium exchanger membrane region
384	 67.38	0	422876..423853	+	325	87198410	-	Saro_0385	-	hypothetical protein
385	 63.04	0	423854..424543	-	229	87198411	-	Saro_0386	-	two component transcriptional regulator
386	 63.35	0	424543..426051	-	502	87198412	-	Saro_0387	-	periplasmic sensor signal transduction histidine kinase
387	 66.48	0	426165..426689	+	174	87198413	-	Saro_0388	-	OmpA/MotB
388	 59.72	-1	426706..426993	+	95	87198414	-	Saro_0389	-	hypothetical protein
389	 64.04	0	427167..427850	+	227	87198415	-	Saro_0390	-	MotA/TolQ/ExbB proton channel
390	 66.67	0	427850..428329	+	159	87198416	-	Saro_0391	-	biopolymer transport protein ExbD/TolR
391	 70.37	+1	428326..429432	+	368	87198417	-	Saro_0392	-	hypothetical protein
392	 63.94	0	429429..430784	+	451	87198418	tolB	Saro_0393	-	translocation protein TolB
393	 63.35	0	431251..431793	+	180	87198419	-	Saro_0394	-	hypothetical protein
394	 63.55	0	431793..433526	+	577	87198420	-	Saro_0395	-	potassium efflux system protein
395	 61.96	-1	433539..434387	+	282	87198421	-	Saro_0396	-	hypothetical protein
396	 57.28	-2	434462..435793	+	443	87198422	-	Saro_0397	-	cation transporter
397	 55.26	-2	435786..436460	+	224	87198423	-	Saro_0398	-	TrkA-N
398	 62.94	0	436525..439260	-	911	87198424	-	Saro_0399	-	ATPase, E1-E2 type
399	 63.59	0	439359..440204	-	281	87198425	-	Saro_0400	-	hypothetical protein
400	 64.35	0	440475..441857	+	460	87198426	-	Saro_0401	-	hypothetical protein
401	 59.56	-1	441880..442653	+	257	87198427	-	Saro_0402	-	SPFH domain-containing protein/band 7 family protein
402	 60.42	-1	442737..443264	+	175	87198428	-	Saro_0403	-	hypothetical protein
403	 55.38	-2	443284..443673	+	129	87198429	-	Saro_0404	-	hypothetical protein
404	 61.21	-1	443690..445009	-	439	87198430	-	Saro_0405	-	di- and tricarboxylate transporters-like
405	 62.41	0	445149..446018	+	289	87198431	-	Saro_0406	-	hypothetical protein
406	 61.35	-1	446037..447314	-	425	87198432	-	Saro_0407	-	Na+/H+ antiporter NhaA
407	 65.36	0	447796..448563	+	255	87198433	-	Saro_0408	-	hypothetical protein
408	 67.61	0	448658..449185	+	175	87198434	-	Saro_0409	-	hypothetical protein
409	 67.04	0	449193..450791	-	532	87198435	-	Saro_0410	-	L-aspartate oxidase
410	 64.09	0	451251..452258	-	335	87198436	-	Saro_0411	-	ABC transporter related
411	 64.68	0	452294..452494	+	66	87198437	-	Saro_0412	-	hypothetical protein
412	 67.15	0	452563..454002	+	479	87198438	-	Saro_0413	-	peptidase U62, modulator of DNA gyrase
413	 67.92	0	454077..454475	+	132	87198439	-	Saro_0414	-	glutathione-dependent formaldehyde-activating, GFA
414	 66.43	0	454543..454965	+	140	87198440	-	Saro_0415	-	hypothetical protein
415	 65.95	0	455007..455561	+	184	87198441	-	Saro_0416	-	GCN5-related N-acetyltransferase
416	 66.04	0	455622..456746	+	374	87198442	ispG	Saro_0417	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
417	 70.55	+1	456748..457443	-	231	87198443	-	Saro_0418	-	hypothetical protein
418	 63.40	0	457574..458338	+	254	87198444	-	Saro_0419	-	hypothetical protein
419	 63.25	0	458344..458694	+	116	87198445	-	Saro_0420	-	hypothetical protein
420	 65.62	0	458696..459172	+	158	87198446	-	Saro_0421	-	crossover junction endodeoxyribonuclease RuvC
421	 67.80	0	459269..459883	+	204	87198447	-	Saro_0422	-	Holliday junction DNA helicase RuvA
422	 66.96	0	459887..460915	+	342	87198448	ruvB	Saro_0423	-	Holliday junction DNA helicase B
423	 69.12	+1	461134..462072	+	312	87198449	-	Saro_0424	-	hypothetical protein
424	 64.38	0	462232..464904	-	890	87198450	-	Saro_0425	-	aconitase
425	 67.45	0	465142..466032	-	296	87198451	-	Saro_0426	-	hypothetical protein
426	 66.67	0	466174..467673	+	499	87198452	-	Saro_0427	-	hypothetical protein
427	 66.99	0	467869..468492	-	207	87198453	-	Saro_0428	-	twin-arginine translocation pathway signal
428	 65.48	0	468544..469047	-	167	87198454	-	Saro_0429	-	GCN5-related N-acetyltransferase
429	 60.76	-1	469082..469318	-	78	87198455	-	Saro_0430	-	hypothetical protein
430	 64.72	0	469415..469723	-	102	87198456	-	Saro_0431	-	hypothetical protein
431	 67.49	0	469798..471252	+	484	87198457	-	Saro_0432	-	pyruvate kinase
432	 68.23	0	471309..471884	-	191	87198458	-	Saro_0433	-	hypothetical protein
433	 71.69	+1	471997..472533	+	178	87198459	-	Saro_0434	-	thiamine monophosphate synthase
434	 66.92	0	472628..475009	+	793	87198460	-	Saro_0435	-	DNA translocase FtsK
435	 67.17	0	475017..475415	-	132	87198461	-	Saro_0436	-	thioesterase-like
436	 64.88	0	475412..477487	-	691	87198462	-	Saro_0437	-	oligopeptidase B
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.