IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3221	 63.08	0	3456553..3457611	-	352	87201247	-	Saro_3235	-	dTDP-glucose 4,6-dehydratase
3222	 66.32	0	3457604..3458461	-	285	87201248	-	Saro_3236	-	dTDP-4-dehydrorhamnose reductase
3223	 63.74	0	3458458..3459003	-	181	87201249	-	Saro_3237	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3224	 61.48	-1	3459000..3459905	-	301	87201250	-	Saro_3238	-	glucose-1-phosphate thymidylyltransferase
3225	 67.39	0	3460109..3461353	-	414	87201251	-	Saro_3239	-	hypothetical protein
3226	 67.49	0	3461337..3463040	-	567	87201252	-	Saro_3240	-	ABC transporter related
3227	 65.69	0	3463030..3464979	-	649	87201253	-	Saro_3241	-	asparagine synthase
3228	 62.77	0	3464976..3465488	-	170	87201254	-	Saro_3242	-	hypothetical protein
3229	 55.56	-2	3465481..3465750	-	89	87201255	-	Saro_3243	-	hypothetical protein
3230	 60.16	-1	3466034..3466894	-	286	87201256	-	Saro_3244	-	HPr kinase
3231	 56.10	-2	3466899..3467144	-	81	87201257	-	Saro_3245	-	hypothetical protein
3232	 63.18	0	3467290..3467547	+	85	87201258	-	Saro_3246	-	hypothetical protein
3233	 67.55	0	3467726..3469084	+	452	87201259	-	Saro_3247	-	O-antigen polymerase
3234	 70.46	+1	3469081..3469791	+	236	87201260	-	Saro_3248	-	hypothetical protein
3235	 66.67	0	3469832..3470386	-	184	87201261	-	Saro_3249	-	OstA-like protein
3236	 66.67	0	3470383..3471027	-	214	87201262	-	Saro_3250	-	hypothetical protein
3237	 65.05	0	3471052..3471669	-	205	87201263	-	Saro_3251	-	3'-5' exonuclease
3238	 64.92	0	3471830..3472744	+	304	87201264	-	Saro_3252	-	sulfate adenylyltransferase subunit 2
3239	 63.72	0	3472744..3474678	+	644	87201265	-	Saro_3253	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3240	 64.18	0	3474721..3475002	+	93	87201266	-	Saro_3254	-	hypothetical protein
3241	 65.59	0	3475038..3476342	-	434	87201267	-	Saro_3255	-	UDP-glucose 6-dehydrogenase
3242	 72.25	+2	3476471..3477151	+	226	87201268	-	Saro_3256	-	uracil-DNA glycosylase
3243	 72.66	+2	3477222..3477638	-	138	87201269	-	Saro_3257	-	hypothetical protein
3244	 63.57	0	3477635..3478150	-	171	87201270	-	Saro_3258	-	signal peptidase II
3245	 63.95	0	3478150..3481056	-	968	87201271	ileS	Saro_3259	-	isoleucyl-tRNA synthetase
3246	 67.86	0	3481250..3482173	-	307	87201272	-	Saro_3260	-	riboflavin kinase / FMN adenylyltransferase
3247	 66.41	0	3482170..3483354	-	394	87201273	-	Saro_3261	-	peptidase M19, renal dipeptidase
3248	 68.63	+1	3483378..3483887	-	169	87201274	-	Saro_3262	-	dihydrofolate reductase
3249	 68.93	+1	3483884..3484942	-	352	87201275	-	Saro_3263	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3250	 63.99	0	3484957..3485442	-	161	87201276	-	Saro_3264	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3251	 65.36	0	3485472..3486158	-	228	87201277	-	Saro_3265	-	phosphoglycerate mutase
3252	 68.73	+1	3486624..3486914	-	96	87201278	-	Saro_3266	-	hypothetical protein
3253	 67.35	0	3486981..3487997	+	338	87201279	-	Saro_3267	-	L-threonine aldolase
3254	 66.88	0	3487994..3488917	+	307	87201280	-	Saro_3268	-	hypothetical protein
3255	 70.32	+1	3488827..3489675	-	282	87201281	-	Saro_3269	-	NAD-dependent epimerase/dehydratase
3256	 66.44	0	3489731..3492346	+	871	87201282	-	Saro_3270	-	peptidase M1, alanyl aminopeptidase
3257	 71.81	+2	3492343..3493101	+	252	87201283	-	Saro_3271	-	hypothetical protein
3258	 66.83	0	3493098..3493721	-	207	87201284	-	Saro_3272	-	HAD family hydrolase
3259	 61.90	-1	3493829..3493954	-	41	87201285	-	Saro_3273	-	50S ribosomal protein L36P
3260	 65.53	0	3494018..3494899	+	293	87201286	-	Saro_3274	-	hypothetical protein
3261	 63.97	0	3494893..3495894	-	333	87201287	-	Saro_3275	-	UDP-galactose 4-epimerase
3262	 66.05	0	3495967..3496776	-	269	87201288	-	Saro_3276	-	hypothetical protein
3263	 70.88	+1	3496835..3497428	+	197	87201289	-	Saro_3277	-	hypothetical protein
3264	 66.40	0	3497425..3498555	+	376	87201290	-	Saro_3278	-	peptidase M14, carboxypeptidase A
3265	 66.96	0	3498762..3499103	-	113	87201291	-	Saro_3279	-	arsenate reductase
3266	 65.87	0	3499265..3501388	+	707	87201292	-	Saro_3280	-	TonB-dependent siderophore receptor
3267	 67.84	0	3501473..3501982	-	169	87201293	-	Saro_3281	-	(2Fe-2S)-binding protein
3268	 61.96	-1	3502015..3502779	-	254	87201294	-	Saro_3282	-	hypothetical protein
3269	 68.10	0	3502808..3503434	+	208	87201295	-	Saro_3283	-	hypothetical protein
3270	 70.98	+1	3503438..3504133	-	231	87201296	-	Saro_3284	-	HPP
3271	 68.69	+1	3504255..3504797	-	180	87201297	rpsI	Saro_3285	-	30S ribosomal protein S9
3272	 63.54	0	3504800..3505279	-	159	87201298	rplM	Saro_3286	-	50S ribosomal protein L13
3273	 68.20	0	3505418..3505744	-	108	87201299	-	Saro_3287	-	periplasmic divalent cation tolerance protein
3274	 67.52	0	3505741..3506793	-	350	87201300	-	Saro_3288	-	cytochrome oxidase assembly
3275	 68.55	+1	3506969..3507340	+	123	87201301	-	Saro_3289	-	hypothetical protein
3276	 66.47	0	3507383..3508378	+	331	87201302	-	Saro_3290	-	bifunctional sulfur carrier protein/thiazole synthase protein
3277	 65.17	0	3508428..3510692	-	754	87201303	-	Saro_3291	-	malic enzyme
3278	 66.55	0	3510824..3512479	-	551	87201304	-	Saro_3292	-	hypothetical protein
3279	 69.38	+1	3512607..3515183	+	858	87201305	-	Saro_3293	-	DNA mismatch repair protein
3280	 70.41	+1	3515176..3515790	+	204	87201306	-	Saro_3294	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
3281	 66.43	0	3515840..3517096	-	418	87201307	-	Saro_3295	-	Na+ dependent nucleoside transporter-like
3282	 63.36	0	3517186..3517851	+	221	87201308	-	Saro_3296	-	hypothetical protein
3283	 67.54	0	3517962..3518873	+	303	87201309	-	Saro_3297	-	acetylglutamate kinase
3284	 71.60	+1	3519032..3519457	+	141	87201310	-	Saro_3298	-	hypothetical protein
3285	 59.67	-1	3519646..3519945	+	99	87201311	-	Saro_3299	-	protein of unknown function YGGT
3286	 67.34	0	3519973..3520866	+	297	87201312	-	Saro_3300	-	methenyltetrahydrofolate cyclohydrolase
3287	 64.94	0	3521161..3521565	+	134	87201313	-	Saro_3301	-	thioesterase superfamily protein
3288	 62.22	0	3521569..3521748	-	59	87201314	-	Saro_3302	-	hypothetical protein
3289	 67.48	0	3521752..3522489	-	245	87201315	-	Saro_3303	-	3-demethylubiquinone-9 3-methyltransferase
3290	 66.19	0	3522575..3523831	+	418	87201316	-	Saro_3304	-	aspartate kinase
3291	 67.85	0	3523876..3524550	-	224	87201317	-	Saro_3305	-	pentapeptide repeat-containing protein
3292	 67.06	0	3524917..3525945	+	342	87201318	-	Saro_3306	-	2-nitropropane dioxygenase, NPD
3293	 67.57	0	3525997..3527214	+	405	87201319	-	Saro_3307	-	major facilitator transporter
3294	 65.57	0	3527377..3528012	-	211	87201320	-	Saro_3308	-	HNH endonuclease
3295	 68.29	0	3528182..3529600	-	472	87201321	-	Saro_3309	-	hypothetical protein
3296	 65.19	0	3529785..3532292	+	835	87201322	-	Saro_3310	-	DNA gyrase subunit B
3297	 67.06	0	3532295..3532546	+	83	87201323	-	Saro_3311	-	hypothetical protein
3298	 68.32	0	3532565..3534979	-	804	87201324	-	Saro_3312	-	DEAD/DEAH box helicase-like
3299	 69.70	+1	3535002..3536780	-	592	87201325	-	Saro_3313	-	hypothetical protein
3300	 68.54	+1	3536777..3538483	-	568	87201326	-	Saro_3314	-	heat shock protein Hsp70
3301	 69.54	+1	3538648..3539553	+	301	87201327	-	Saro_3315	-	transport-associated
3302	 65.38	0	3539560..3540963	-	467	87201328	-	Saro_3316	-	phosphomannomutase
3303	 72.39	+2	3541039..3541335	-	98	87201329	-	Saro_3317	-	heat shock protein DnaJ-like
3304	 66.42	0	3541335..3542159	-	274	87201330	-	Saro_3318	-	ATPases involved in chromosome partitioning-like
3305	 67.48	0	3542259..3543119	+	286	87201331	-	Saro_3319	-	pantothenate synthetase
3306	 66.09	0	3543116..3543460	+	114	87201332	-	Saro_3320	-	hypothetical protein
3307	 68.20	0	3543483..3544331	-	282	87201333	-	Saro_3321	-	metallophosphoesterase
3308	 69.01	+1	3544391..3545242	-	283	87201334	-	Saro_3322	-	hypothetical protein
3309	 63.30	0	3545279..3545545	-	88	87201335	-	Saro_3323	-	hypothetical protein
3310	 69.55	+1	3545798..3546109	+	103	87201336	-	Saro_3324	-	hypothetical protein
3311	 64.34	0	3546220..3546735	-	171	87201337	-	Saro_3325	-	putative transcriptional regulator
3312	 69.77	+1	3546871..3547224	+	117	87201338	-	Saro_3326	-	hypothetical protein
3313	 70.27	+1	3547349..3548014	+	221	87201339	-	Saro_3327	-	hypothetical protein
3314	 65.93	0	3548061..3548468	+	135	87201340	-	Saro_3328	-	protein-methionine-S-oxide reductase
3315	 67.32	0	3548577..3550715	+	712	87201341	-	Saro_3329	-	penicillin-binding protein 1A
3316	 68.31	0	3550784..3551026	+	80	87201342	-	Saro_3330	-	hypothetical protein
3317	 66.80	0	3551124..3552656	-	510	87201343	-	Saro_3331	-	peptidase S1C, Do
3318	 64.20	0	3552814..3553665	-	283	87201344	-	Saro_3332	-	band 7 protein
3319	 66.76	0	3553667..3554791	-	374	87201345	-	Saro_3333	-	HflK protein
3320	 68.74	+1	3554941..3555906	+	321	87201346	-	Saro_3334	-	ATPase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.