IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3156	 63.25	0	3384930..3386129	-	399	87201182	-	Saro_3170	-	succinyl-CoA synthetase (ADP-forming) beta subunit
3157	 71.69	+1	3386353..3387129	+	258	87201183	-	Saro_3171	-	inositol monophosphatase
3158	 65.46	0	3387136..3388131	-	331	87201184	-	Saro_3172	-	aldo/keto reductase
3159	 65.66	0	3388263..3388955	-	230	87201185	-	Saro_3173	-	OmpA/MotB
3160	 66.16	0	3389088..3390464	+	458	87201186	-	Saro_3174	-	hypothetical protein
3161	 65.97	0	3390562..3391995	-	477	87201187	-	Saro_3175	-	glutamate synthase (NADH) small subunit
3162	 65.93	0	3392022..3396662	-	1546	87201188	-	Saro_3176	-	glutamate synthase (NADH) large subunit
3163	 70.20	+1	3396868..3398451	-	527	87201189	-	Saro_3177	-	hypothetical protein
3164	 68.73	+1	3398543..3399751	-	402	87201190	-	Saro_3178	-	glycosyl transferase, group 1
3165	 65.35	0	3399971..3401332	+	453	87201191	-	Saro_3179	-	O-antigen polymerase
3166	 62.34	0	3401412..3401873	+	153	87201192	-	Saro_3180	-	MaoC-like dehydratase
3167	 65.55	0	3401890..3402426	+	178	87201193	-	Saro_3181	-	hypothetical protein
3168	 65.01	0	3402497..3403762	-	421	87201194	-	Saro_3182	-	polyhydroxyalkanoate depolymerase, intracellular
3169	 68.60	+1	3403904..3405715	+	603	87201195	-	Saro_3183	-	ABC transporter, ATP-binding/permease protein
3170	 65.56	0	3405807..3406619	+	270	87201196	-	Saro_3184	-	undecaprenyl-diphosphatase
3171	 64.79	0	3406716..3406982	+	88	87201197	-	Saro_3185	-	transglycosylase-associated protein
3172	 66.32	0	3407063..3407347	+	94	87201198	-	Saro_3186	-	hypothetical protein
3173	 66.03	0	3407491..3408429	-	312	87201199	phhA	Saro_3187	-	phenylalanine 4-monooxygenase
3174	 55.95	-2	3408604..3408771	+	55	87201200	rpmG	Saro_3188	-	50S ribosomal protein L33
3175	 67.39	0	3408868..3409554	+	228	87201201	-	Saro_3189	-	outer membrane lipoprotein carrier protein LolA
3176	 64.52	0	3409927..3410718	+	263	87201202	-	Saro_3190	-	exodeoxyribonuclease III
3177	 68.45	0	3410715..3411779	+	354	87201203	-	Saro_3191	-	GTP cyclohydrolase II
3178	 65.68	0	3411879..3412181	-	100	87201204	-	Saro_3192	-	hypothetical protein
3179	 72.81	+2	3412230..3412571	-	113	87201205	-	Saro_3193	-	hypothetical protein
3180	 67.37	0	3412609..3413604	-	331	87201206	-	Saro_3194	-	hypothetical protein
3181	 67.99	0	3413686..3413988	-	100	87201207	-	Saro_3195	-	hypothetical protein
3182	 69.01	+1	3413981..3414193	-	70	87201208	-	Saro_3196	-	hypothetical protein
3183	 64.03	0	3414207..3415115	-	302	87201209	-	Saro_3197	-	band 7 protein
3184	 63.84	0	3415457..3415633	+	58	87201210	-	Saro_3198	-	hypothetical protein
3185	 60.61	-1	3415696..3416685	+	329	87201211	-	Saro_3199	-	integral membrane protein TerC
3186	 69.05	+1	3416729..3418531	-	600	87201212	-	Saro_3200	-	ATP-dependent DNA helicase RecQ
3187	 60.93	-1	3418559..3419029	-	156	87201213	-	Saro_3201	-	hypothetical protein
3188	 63.95	0	3419089..3419604	-	171	87201214	-	Saro_3202	-	hypothetical protein
3189	 63.79	0	3419630..3420844	-	404	87201215	-	Saro_3203	-	sodium/hydrogen exchanger
3190	 62.96	0	3420940..3421236	+	98	87201216	-	Saro_3204	-	hypothetical protein
3191	 68.50	0	3421366..3421638	+	90	87201217	-	Saro_3205	-	hypothetical protein
3192	 64.39	0	3421708..3424344	-	878	87201218	-	Saro_3206	-	methionine synthase (B12-dependent)
3193	 62.95	0	3424461..3425537	-	358	87201219	-	Saro_3207	-	methionine synthase (B12-dependent)
3194	 67.09	0	3425534..3426475	-	313	87201220	-	Saro_3208	-	5,10-methylenetetrahydrofolate reductase
3195	 66.18	0	3426482..3427507	-	341	87201221	-	Saro_3209	-	ArsR family transcriptional regulator
3196	 67.46	0	3427655..3428032	-	125	87201222	-	Saro_3210	-	hypothetical protein
3197	 63.18	0	3428245..3428502	-	85	87201223	-	Saro_3211	-	hypothetical protein
3198	 63.21	0	3428543..3429265	-	240	87201224	-	Saro_3212	-	3-oxoacyl-[acyl-carrier-protein] reductase
3199	 65.72	0	3429441..3430181	-	246	87201225	-	Saro_3213	-	hypothetical protein
3200	 66.24	0	3430597..3431061	+	154	87201226	-	Saro_3214	-	hypothetical protein
3201	 64.82	0	3431111..3433657	+	848	87201227	leuS	Saro_3215	-	leucyl-tRNA synthetase
3202	 66.90	0	3433719..3434150	+	143	87201228	-	Saro_3216	-	hypothetical protein
3203	 65.79	0	3434161..3435183	+	340	87201229	-	Saro_3217	-	DNA polymerase III, delta subunit
3204	 64.32	0	3435376..3436779	+	467	87201230	-	Saro_3218	-	sugar transferase
3205	 67.63	0	3436809..3437744	-	311	87201231	-	Saro_3219	-	peptidase M48, Ste24p
3206	 62.64	0	3437998..3439263	+	421	87201232	-	Saro_3220	-	GDP-mannose 6-dehydrogenase
3207	 61.16	-1	3439260..3440513	+	417	87201233	-	Saro_3221	-	glycosyl transferase, group 1
3208	 65.02	0	3440545..3441090	-	181	87201234	-	Saro_3222	-	hypothetical protein
3209	 61.06	-1	3441276..3441989	+	237	87201235	-	Saro_3223	-	polysaccharide export protein
3210	 64.85	0	3442033..3444234	+	733	87201236	-	Saro_3224	-	protein-tyrosine kinase
3211	 67.07	0	3444277..3445527	+	416	87201237	-	Saro_3225	-	glycosyl transferase, group 1
3212	 65.09	0	3445570..3446523	-	317	87201238	-	Saro_3226	-	glycosyl transferase family protein
3213	 55.37	-2	3446520..3447626	-	368	87201239	-	Saro_3227	-	acyltransferase 3
3214	 59.63	-1	3447652..3448959	-	435	87201240	-	Saro_3228	-	hypothetical protein
3215	 66.67	0	3449113..3449382	+	89	87201241	-	Saro_3229	-	hypothetical protein
3216	 66.52	0	3449382..3451442	+	686	87201242	-	Saro_3230	-	hypothetical protein
3217	 64.39	0	3451482..3452753	-	423	87201243	-	Saro_3231	-	hypothetical protein
3218	 65.95	0	3452750..3453721	-	323	87201244	-	Saro_3232	-	hypothetical protein
3219	 64.14	0	3453763..3455184	-	473	87201245	-	Saro_3233	-	polysaccharide biosynthesis protein
3220	 64.46	0	3455384..3456517	+	377	87201246	-	Saro_3234	-	polysaccharide biosynthesis protein
3221	 63.08	0	3456553..3457611	-	352	87201247	-	Saro_3235	-	dTDP-glucose 4,6-dehydratase
3222	 66.32	0	3457604..3458461	-	285	87201248	-	Saro_3236	-	dTDP-4-dehydrorhamnose reductase
3223	 63.74	0	3458458..3459003	-	181	87201249	-	Saro_3237	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3224	 61.48	-1	3459000..3459905	-	301	87201250	-	Saro_3238	-	glucose-1-phosphate thymidylyltransferase
3225	 67.39	0	3460109..3461353	-	414	87201251	-	Saro_3239	-	hypothetical protein
3226	 67.49	0	3461337..3463040	-	567	87201252	-	Saro_3240	-	ABC transporter related
3227	 65.69	0	3463030..3464979	-	649	87201253	-	Saro_3241	-	asparagine synthase
3228	 62.77	0	3464976..3465488	-	170	87201254	-	Saro_3242	-	hypothetical protein
3229	 55.56	-2	3465481..3465750	-	89	87201255	-	Saro_3243	-	hypothetical protein
3230	 60.16	-1	3466034..3466894	-	286	87201256	-	Saro_3244	-	HPr kinase
3231	 56.10	-2	3466899..3467144	-	81	87201257	-	Saro_3245	-	hypothetical protein
3232	 63.18	0	3467290..3467547	+	85	87201258	-	Saro_3246	-	hypothetical protein
3233	 67.55	0	3467726..3469084	+	452	87201259	-	Saro_3247	-	O-antigen polymerase
3234	 70.46	+1	3469081..3469791	+	236	87201260	-	Saro_3248	-	hypothetical protein
3235	 66.67	0	3469832..3470386	-	184	87201261	-	Saro_3249	-	OstA-like protein
3236	 66.67	0	3470383..3471027	-	214	87201262	-	Saro_3250	-	hypothetical protein
3237	 65.05	0	3471052..3471669	-	205	87201263	-	Saro_3251	-	3'-5' exonuclease
3238	 64.92	0	3471830..3472744	+	304	87201264	-	Saro_3252	-	sulfate adenylyltransferase subunit 2
3239	 63.72	0	3472744..3474678	+	644	87201265	-	Saro_3253	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3240	 64.18	0	3474721..3475002	+	93	87201266	-	Saro_3254	-	hypothetical protein
3241	 65.59	0	3475038..3476342	-	434	87201267	-	Saro_3255	-	UDP-glucose 6-dehydrogenase
3242	 72.25	+2	3476471..3477151	+	226	87201268	-	Saro_3256	-	uracil-DNA glycosylase
3243	 72.66	+2	3477222..3477638	-	138	87201269	-	Saro_3257	-	hypothetical protein
3244	 63.57	0	3477635..3478150	-	171	87201270	-	Saro_3258	-	signal peptidase II
3245	 63.95	0	3478150..3481056	-	968	87201271	ileS	Saro_3259	-	isoleucyl-tRNA synthetase
3246	 67.86	0	3481250..3482173	-	307	87201272	-	Saro_3260	-	riboflavin kinase / FMN adenylyltransferase
3247	 66.41	0	3482170..3483354	-	394	87201273	-	Saro_3261	-	peptidase M19, renal dipeptidase
3248	 68.63	+1	3483378..3483887	-	169	87201274	-	Saro_3262	-	dihydrofolate reductase
3249	 68.93	+1	3483884..3484942	-	352	87201275	-	Saro_3263	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3250	 63.99	0	3484957..3485442	-	161	87201276	-	Saro_3264	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3251	 65.36	0	3485472..3486158	-	228	87201277	-	Saro_3265	-	phosphoglycerate mutase
3252	 68.73	+1	3486624..3486914	-	96	87201278	-	Saro_3266	-	hypothetical protein
3253	 67.35	0	3486981..3487997	+	338	87201279	-	Saro_3267	-	L-threonine aldolase
3254	 66.88	0	3487994..3488917	+	307	87201280	-	Saro_3268	-	hypothetical protein
3255	 70.32	+1	3488827..3489675	-	282	87201281	-	Saro_3269	-	NAD-dependent epimerase/dehydratase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.