IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3093	 65.70	0	3323783..3323989	-	68	87201119	-	Saro_3107	-	hypothetical protein
3094	 60.43	-1	3324128..3324496	+	122	87201120	-	Saro_3108	-	response regulator receiver protein
3095	 59.66	-1	3324517..3325101	-	194	87201121	-	Saro_3109	-	hypothetical protein
3096	 60.42	-1	3325240..3325479	+	79	87201122	-	Saro_3110	-	hypothetical protein
3097	 64.17	0	3325484..3326683	+	399	87201123	-	Saro_3111	-	serine palmitoyltransferase
3098	 67.94	0	3326683..3327546	+	287	87201124	-	Saro_3112	-	lipolytic enzyme, G-D-S-L
3099	 69.03	+1	3327559..3328107	-	182	87201125	-	Saro_3113	-	ribosomal large subunit pseudouridine synthase E
3100	 65.30	0	3328116..3328772	-	218	87201126	-	Saro_3114	-	glutathione S-transferase-like
3101	 70.01	+1	3328925..3329791	+	288	87201127	-	Saro_3115	-	MltA-interacting MipA
3102	 64.81	0	3329801..3330448	-	215	87201128	-	Saro_3116	-	hypothetical protein
3103	 68.66	+1	3330666..3331166	+	166	87201129	-	Saro_3117	-	hypothetical protein
3104	 70.29	+1	3331159..3332481	+	440	87201130	-	Saro_3118	-	hypothetical protein
3105	 68.80	+1	3332560..3333729	+	389	87201131	-	Saro_3119	-	Phage portal protein, HK97
3106	 69.58	+1	3333726..3334034	+	102	87201132	-	Saro_3120	-	hypothetical protein
3107	 69.54	+1	3334031..3334483	+	150	87201133	-	Saro_3121	-	prohead peptidase
3108	 66.84	0	3334561..3335703	+	380	87201134	-	Saro_3122	-	phage major capsid protein, HK97
3109	 69.93	+1	3335824..3336375	+	183	87201135	-	Saro_3123	-	phiE125 gp8 hypothetical protein
3110	 70.20	+1	3336535..3336930	+	131	87201136	-	Saro_3124	-	hypothetical protein
3111	 64.46	0	3336959..3337366	+	135	87201137	-	Saro_3125	-	Phage major tail protein, TP901-1
3112	 71.11	+1	3337366..3337680	+	104	87201138	-	Saro_3126	-	hypothetical protein
3113	 70.63	+1	3337626..3337877	+	83	87201139	-	Saro_3127	-	hypothetical protein
3114	 68.90	+1	3337867..3338448	+	193	87201140	-	Saro_3128	-	hypothetical protein
3115	 66.28	0	3338468..3340807	+	779	87201141	-	Saro_3129	-	hypothetical protein
3116	 68.00	0	3340804..3341625	+	273	87201142	-	Saro_3130	-	phage protein
3117	 66.41	0	3341622..3342017	+	131	87201143	-	Saro_3131	-	hypothetical protein
3118	 67.44	0	3342011..3344215	+	734	87201144	-	Saro_3132	-	hypothetical protein
3119	 63.83	0	3344239..3344697	+	152	87201145	-	Saro_3133	-	hypothetical protein
3120	 64.43	0	3344891..3345964	+	357	87201146	-	Saro_3134	-	OmpA/MotB
3121	 66.32	0	3346022..3346597	+	191	87201147	-	Saro_3135	-	superoxide dismutase, copper/zinc binding
3122	 65.35	0	3346614..3348206	-	530	87201148	-	Saro_3136	-	major facilitator transporter
3123	 65.67	0	3348178..3348879	-	233	87201149	-	Saro_3137	-	ExsB
3124	 67.92	0	3348941..3349420	-	159	87201150	-	Saro_3138	-	hypothetical protein
3125	 64.59	0	3349503..3350417	-	304	87201151	-	Saro_3139	-	Hsp33 protein
3126	 66.35	0	3350414..3351349	-	311	87201152	-	Saro_3140	-	ornithine carbamoyltransferase
3127	 64.57	0	3351346..3352539	-	397	87201153	-	Saro_3141	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
3128	 68.78	+1	3352715..3353518	-	267	87201154	-	Saro_3142	-	cold-shock DNA-binding protein family protein
3129	 67.59	0	3353813..3354247	+	144	87201155	-	Saro_3143	-	hypothetical protein
3130	 70.60	+1	3354272..3354703	+	143	87201156	-	Saro_3144	-	hypothetical protein
3131	 66.11	0	3354700..3355593	+	297	87201157	-	Saro_3145	-	hypothetical protein
3132	 67.65	0	3355580..3356191	-	203	87201158	-	Saro_3146	-	TetR family transcriptional regulator
3133	 66.41	0	3356399..3358726	+	775	87201159	-	Saro_3147	-	TonB-dependent receptor
3134	 67.05	0	3359153..3360457	-	434	87201160	-	Saro_3148	-	UDP-glucose/GDP-mannose dehydrogenase
3135	 67.29	0	3360447..3361565	-	372	87201161	-	Saro_3149	-	UDP-N-acetylglucosamine 2-epimerase
3136	 67.35	0	3361673..3362998	+	441	87201162	-	Saro_3150	-	UDP-glucose/GDP-mannose dehydrogenase
3137	 65.97	0	3363104..3364102	+	332	87201163	-	Saro_3151	-	NAD-dependent epimerase/dehydratase
3138	 65.14	0	3364131..3364523	-	130	87201164	-	Saro_3152	-	hypothetical protein
3139	 68.38	0	3364643..3365635	-	330	87201165	-	Saro_3153	-	peptidyl-arginine deiminase
3140	 69.07	+1	3365728..3368436	+	902	87201166	-	Saro_3154	-	glutamate-ammonia-ligase adenylyltransferase
3141	 62.03	-1	3368433..3368906	+	157	87201167	-	Saro_3155	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3142	 67.30	0	3368961..3369755	+	264	87201168	-	Saro_3156	-	hypothetical protein
3143	 66.11	0	3369948..3370664	+	238	87201169	-	Saro_3157	-	peptidase M23B
3144	 66.52	0	3370779..3371468	-	229	87201170	-	Saro_3158	-	hypothetical protein
3145	 68.77	+1	3371606..3372700	+	364	87201171	-	Saro_3159	-	hypothetical protein
3146	 67.19	0	3372723..3373298	+	191	87201172	-	Saro_3160	-	beta-Ig-H3/fasciclin
3147	 66.15	0	3373450..3375000	+	516	87201173	-	Saro_3161	-	acyl-CoA synthetase
3148	 67.05	0	3375020..3376312	+	430	87201174	-	Saro_3162	-	cytochrome P450
3149	 66.88	0	3376371..3377777	-	468	87201175	-	Saro_3163	-	sugar transporter
3150	 65.25	0	3378071..3379762	-	563	87201176	-	Saro_3164	-	glucose-methanol-choline oxidoreductase
3151	 66.85	0	3379785..3380327	-	180	87201177	-	Saro_3165	-	twin-arginine translocation pathway signal
3152	 65.03	0	3380417..3381637	+	406	87201178	-	Saro_3166	-	nucleoside:H+ symporter
3153	 66.06	0	3381637..3382617	+	326	87201179	-	Saro_3167	-	twin-arginine translocation pathway signal
3154	 68.38	0	3383015..3383947	-	310	87201180	-	Saro_3168	-	electron transfer flavoprotein, alpha subunit
3155	 65.07	0	3383947..3384699	-	250	87201181	-	Saro_3169	-	electron transfer flavoprotein beta-subunit
3156	 63.25	0	3384930..3386129	-	399	87201182	-	Saro_3170	-	succinyl-CoA synthetase (ADP-forming) beta subunit
3157	 71.69	+1	3386353..3387129	+	258	87201183	-	Saro_3171	-	inositol monophosphatase
3158	 65.46	0	3387136..3388131	-	331	87201184	-	Saro_3172	-	aldo/keto reductase
3159	 65.66	0	3388263..3388955	-	230	87201185	-	Saro_3173	-	OmpA/MotB
3160	 66.16	0	3389088..3390464	+	458	87201186	-	Saro_3174	-	hypothetical protein
3161	 65.97	0	3390562..3391995	-	477	87201187	-	Saro_3175	-	glutamate synthase (NADH) small subunit
3162	 65.93	0	3392022..3396662	-	1546	87201188	-	Saro_3176	-	glutamate synthase (NADH) large subunit
3163	 70.20	+1	3396868..3398451	-	527	87201189	-	Saro_3177	-	hypothetical protein
3164	 68.73	+1	3398543..3399751	-	402	87201190	-	Saro_3178	-	glycosyl transferase, group 1
3165	 65.35	0	3399971..3401332	+	453	87201191	-	Saro_3179	-	O-antigen polymerase
3166	 62.34	0	3401412..3401873	+	153	87201192	-	Saro_3180	-	MaoC-like dehydratase
3167	 65.55	0	3401890..3402426	+	178	87201193	-	Saro_3181	-	hypothetical protein
3168	 65.01	0	3402497..3403762	-	421	87201194	-	Saro_3182	-	polyhydroxyalkanoate depolymerase, intracellular
3169	 68.60	+1	3403904..3405715	+	603	87201195	-	Saro_3183	-	ABC transporter, ATP-binding/permease protein
3170	 65.56	0	3405807..3406619	+	270	87201196	-	Saro_3184	-	undecaprenyl-diphosphatase
3171	 64.79	0	3406716..3406982	+	88	87201197	-	Saro_3185	-	transglycosylase-associated protein
3172	 66.32	0	3407063..3407347	+	94	87201198	-	Saro_3186	-	hypothetical protein
3173	 66.03	0	3407491..3408429	-	312	87201199	phhA	Saro_3187	-	phenylalanine 4-monooxygenase
3174	 55.95	-2	3408604..3408771	+	55	87201200	rpmG	Saro_3188	-	50S ribosomal protein L33
3175	 67.39	0	3408868..3409554	+	228	87201201	-	Saro_3189	-	outer membrane lipoprotein carrier protein LolA
3176	 64.52	0	3409927..3410718	+	263	87201202	-	Saro_3190	-	exodeoxyribonuclease III
3177	 68.45	0	3410715..3411779	+	354	87201203	-	Saro_3191	-	GTP cyclohydrolase II
3178	 65.68	0	3411879..3412181	-	100	87201204	-	Saro_3192	-	hypothetical protein
3179	 72.81	+2	3412230..3412571	-	113	87201205	-	Saro_3193	-	hypothetical protein
3180	 67.37	0	3412609..3413604	-	331	87201206	-	Saro_3194	-	hypothetical protein
3181	 67.99	0	3413686..3413988	-	100	87201207	-	Saro_3195	-	hypothetical protein
3182	 69.01	+1	3413981..3414193	-	70	87201208	-	Saro_3196	-	hypothetical protein
3183	 64.03	0	3414207..3415115	-	302	87201209	-	Saro_3197	-	band 7 protein
3184	 63.84	0	3415457..3415633	+	58	87201210	-	Saro_3198	-	hypothetical protein
3185	 60.61	-1	3415696..3416685	+	329	87201211	-	Saro_3199	-	integral membrane protein TerC
3186	 69.05	+1	3416729..3418531	-	600	87201212	-	Saro_3200	-	ATP-dependent DNA helicase RecQ
3187	 60.93	-1	3418559..3419029	-	156	87201213	-	Saro_3201	-	hypothetical protein
3188	 63.95	0	3419089..3419604	-	171	87201214	-	Saro_3202	-	hypothetical protein
3189	 63.79	0	3419630..3420844	-	404	87201215	-	Saro_3203	-	sodium/hydrogen exchanger
3190	 62.96	0	3420940..3421236	+	98	87201216	-	Saro_3204	-	hypothetical protein
3191	 68.50	0	3421366..3421638	+	90	87201217	-	Saro_3205	-	hypothetical protein
3192	 64.39	0	3421708..3424344	-	878	87201218	-	Saro_3206	-	methionine synthase (B12-dependent)
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.