IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3049	 71.50	+1	3282003..3283325	-	440	87201075	-	Saro_3063	-	tetratricopeptide TPR_4
3050	 68.02	0	3283348..3283863	-	171	87201076	-	Saro_3064	-	hypothetical protein
3051	 67.36	0	3283877..3284602	-	241	87201077	-	Saro_3065	-	cobyrinic acid a,c-diamide synthase
3052	 70.05	+1	3284809..3286107	+	432	87201078	-	Saro_3066	-	Sel1 repeat-containing protein
3053	 69.05	+1	3286112..3287326	+	404	87201079	-	Saro_3067	-	hypothetical protein
3054	 65.91	0	3287258..3288442	-	394	87201080	-	Saro_3068	-	phospholipase D/transphosphatidylase
3055	 67.58	0	3288488..3289687	+	399	87201081	-	Saro_3069	-	glycosyl transferase, group 1
3056	 64.21	0	3289801..3290493	+	230	87201082	-	Saro_3070	-	ErfK/YbiS/YcfS/YnhG
3057	 66.16	0	3290531..3291325	-	264	87201083	-	Saro_3071	-	short chain dehydrogenase
3058	 67.18	0	3291337..3292119	-	260	87201084	-	Saro_3072	-	short-chain dehydrogenase/reductase SDR
3059	 65.45	0	3292116..3293099	-	327	87201085	-	Saro_3073	-	2-nitropropane dioxygenase, NPD
3060	 66.94	0	3293161..3293895	-	244	87201086	-	Saro_3074	-	sigma 28 (flagella/sporulation)
3061	 67.28	0	3294076..3296196	+	706	87201087	-	Saro_3075	-	TonB-dependent receptor
3062	 65.37	0	3296225..3296455	-	76	87201088	-	Saro_3076	-	hypothetical protein
3063	 63.02	0	3296634..3296825	-	63	87201089	-	Saro_3077	-	hypothetical protein
3064	 67.19	0	3296966..3297730	-	254	87201090	-	Saro_3078	-	hypothetical protein
3065	 72.06	+2	3297734..3298048	-	104	87201091	-	Saro_3079	-	hypothetical protein
3066	 64.58	0	3298573..3299244	+	223	87201092	-	Saro_3080	-	glutathione S-transferase-like
3067	 69.35	+1	3299458..3300390	-	310	87201093	-	Saro_3081	-	NAD-dependent epimerase/dehydratase
3068	 68.36	0	3301191..3302078	-	295	87201094	-	Saro_3082	-	protein tyrosine/serine phosphatase
3069	 68.59	+1	3302081..3302860	-	259	87201095	-	Saro_3083	-	short-chain dehydrogenase/reductase SDR
3070	 64.75	0	3302873..3305065	-	730	87201096	-	Saro_3084	-	TonB-dependent receptor
3071	 68.36	0	3305260..3305907	+	215	87201097	-	Saro_3085	-	TetR family transcriptional regulator
3072	 53.91	-2	3306108..3306593	-	161	87201098	-	Saro_3086	-	hypothetical protein
3073	 61.42	-1	3307181..3308095	+	304	87201099	-	Saro_3087	-	taurine catabolism dioxygenase TauD/TfdA
3074	 63.81	0	3308092..3309804	+	570	87201100	-	Saro_3088	-	dihydroorotase
3075	 63.15	0	3309817..3311067	-	416	87201101	-	Saro_3089	-	LuxR family transcriptional regulator
3076	 60.98	-1	3311225..3311611	+	128	87201102	-	Saro_3090	-	endoribonuclease L-PSP
3077	 53.77	-2	3311811..3312593	-	260	87201103	-	Saro_3091	-	hypothetical protein
3078	 68.65	+1	3312771..3313274	-	167	87201104	-	Saro_3092	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3079	 65.72	0	3313271..3314119	-	282	87201105	-	Saro_3093	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3080	 67.25	0	3314172..3315026	-	284	87201106	-	Saro_3094	-	hypothetical protein
3081	 64.25	0	3315106..3315642	+	178	87201107	-	Saro_3095	-	peptide methionine sulfoxide reductase
3082	 73.02	+2	3315639..3316898	-	419	87201108	-	Saro_3096	-	Fmu (Sun)
3083	 65.86	0	3316897..3317145	+	82	87201109	-	Saro_3097	-	hypothetical protein
3084	 67.91	0	3317166..3317648	-	160	87201110	-	Saro_3098	-	hypothetical protein
3085	 68.90	+1	3317633..3319111	-	492	87201111	-	Saro_3099	-	extracellular solute-binding protein
3086	 65.36	0	3319158..3319541	-	127	87201112	-	Saro_3100	-	hypothetical protein
3087	 61.00	-1	3319699..3320157	-	152	87201113	-	Saro_3101	-	TraR/DksA family transcriptional regulator
3088	 67.54	0	3320452..3320796	+	114	87201114	-	Saro_3102	-	Sel1 repeat-containing protein
3089	 66.49	0	3320807..3321937	-	376	87201115	-	Saro_3103	-	hypothetical protein
3090	 69.92	+1	3321945..3322712	-	255	87201116	-	Saro_3104	-	glycerophosphoryl diester phosphodiesterase
3091	 68.80	+1	3322693..3323160	-	155	87201117	-	Saro_3105	-	endoribonuclease L-PSP
3092	 63.33	0	3323157..3323786	-	209	87201118	-	Saro_3106	-	hypothetical protein
3093	 65.70	0	3323783..3323989	-	68	87201119	-	Saro_3107	-	hypothetical protein
3094	 60.43	-1	3324128..3324496	+	122	87201120	-	Saro_3108	-	response regulator receiver protein
3095	 59.66	-1	3324517..3325101	-	194	87201121	-	Saro_3109	-	hypothetical protein
3096	 60.42	-1	3325240..3325479	+	79	87201122	-	Saro_3110	-	hypothetical protein
3097	 64.17	0	3325484..3326683	+	399	87201123	-	Saro_3111	-	serine palmitoyltransferase
3098	 67.94	0	3326683..3327546	+	287	87201124	-	Saro_3112	-	lipolytic enzyme, G-D-S-L
3099	 69.03	+1	3327559..3328107	-	182	87201125	-	Saro_3113	-	ribosomal large subunit pseudouridine synthase E
3100	 65.30	0	3328116..3328772	-	218	87201126	-	Saro_3114	-	glutathione S-transferase-like
3101	 70.01	+1	3328925..3329791	+	288	87201127	-	Saro_3115	-	MltA-interacting MipA
3102	 64.81	0	3329801..3330448	-	215	87201128	-	Saro_3116	-	hypothetical protein
3103	 68.66	+1	3330666..3331166	+	166	87201129	-	Saro_3117	-	hypothetical protein
3104	 70.29	+1	3331159..3332481	+	440	87201130	-	Saro_3118	-	hypothetical protein
3105	 68.80	+1	3332560..3333729	+	389	87201131	-	Saro_3119	-	Phage portal protein, HK97
3106	 69.58	+1	3333726..3334034	+	102	87201132	-	Saro_3120	-	hypothetical protein
3107	 69.54	+1	3334031..3334483	+	150	87201133	-	Saro_3121	-	prohead peptidase
3108	 66.84	0	3334561..3335703	+	380	87201134	-	Saro_3122	-	phage major capsid protein, HK97
3109	 69.93	+1	3335824..3336375	+	183	87201135	-	Saro_3123	-	phiE125 gp8 hypothetical protein
3110	 70.20	+1	3336535..3336930	+	131	87201136	-	Saro_3124	-	hypothetical protein
3111	 64.46	0	3336959..3337366	+	135	87201137	-	Saro_3125	-	Phage major tail protein, TP901-1
3112	 71.11	+1	3337366..3337680	+	104	87201138	-	Saro_3126	-	hypothetical protein
3113	 70.63	+1	3337626..3337877	+	83	87201139	-	Saro_3127	-	hypothetical protein
3114	 68.90	+1	3337867..3338448	+	193	87201140	-	Saro_3128	-	hypothetical protein
3115	 66.28	0	3338468..3340807	+	779	87201141	-	Saro_3129	-	hypothetical protein
3116	 68.00	0	3340804..3341625	+	273	87201142	-	Saro_3130	-	phage protein
3117	 66.41	0	3341622..3342017	+	131	87201143	-	Saro_3131	-	hypothetical protein
3118	 67.44	0	3342011..3344215	+	734	87201144	-	Saro_3132	-	hypothetical protein
3119	 63.83	0	3344239..3344697	+	152	87201145	-	Saro_3133	-	hypothetical protein
3120	 64.43	0	3344891..3345964	+	357	87201146	-	Saro_3134	-	OmpA/MotB
3121	 66.32	0	3346022..3346597	+	191	87201147	-	Saro_3135	-	superoxide dismutase, copper/zinc binding
3122	 65.35	0	3346614..3348206	-	530	87201148	-	Saro_3136	-	major facilitator transporter
3123	 65.67	0	3348178..3348879	-	233	87201149	-	Saro_3137	-	ExsB
3124	 67.92	0	3348941..3349420	-	159	87201150	-	Saro_3138	-	hypothetical protein
3125	 64.59	0	3349503..3350417	-	304	87201151	-	Saro_3139	-	Hsp33 protein
3126	 66.35	0	3350414..3351349	-	311	87201152	-	Saro_3140	-	ornithine carbamoyltransferase
3127	 64.57	0	3351346..3352539	-	397	87201153	-	Saro_3141	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
3128	 68.78	+1	3352715..3353518	-	267	87201154	-	Saro_3142	-	cold-shock DNA-binding protein family protein
3129	 67.59	0	3353813..3354247	+	144	87201155	-	Saro_3143	-	hypothetical protein
3130	 70.60	+1	3354272..3354703	+	143	87201156	-	Saro_3144	-	hypothetical protein
3131	 66.11	0	3354700..3355593	+	297	87201157	-	Saro_3145	-	hypothetical protein
3132	 67.65	0	3355580..3356191	-	203	87201158	-	Saro_3146	-	TetR family transcriptional regulator
3133	 66.41	0	3356399..3358726	+	775	87201159	-	Saro_3147	-	TonB-dependent receptor
3134	 67.05	0	3359153..3360457	-	434	87201160	-	Saro_3148	-	UDP-glucose/GDP-mannose dehydrogenase
3135	 67.29	0	3360447..3361565	-	372	87201161	-	Saro_3149	-	UDP-N-acetylglucosamine 2-epimerase
3136	 67.35	0	3361673..3362998	+	441	87201162	-	Saro_3150	-	UDP-glucose/GDP-mannose dehydrogenase
3137	 65.97	0	3363104..3364102	+	332	87201163	-	Saro_3151	-	NAD-dependent epimerase/dehydratase
3138	 65.14	0	3364131..3364523	-	130	87201164	-	Saro_3152	-	hypothetical protein
3139	 68.38	0	3364643..3365635	-	330	87201165	-	Saro_3153	-	peptidyl-arginine deiminase
3140	 69.07	+1	3365728..3368436	+	902	87201166	-	Saro_3154	-	glutamate-ammonia-ligase adenylyltransferase
3141	 62.03	-1	3368433..3368906	+	157	87201167	-	Saro_3155	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3142	 67.30	0	3368961..3369755	+	264	87201168	-	Saro_3156	-	hypothetical protein
3143	 66.11	0	3369948..3370664	+	238	87201169	-	Saro_3157	-	peptidase M23B
3144	 66.52	0	3370779..3371468	-	229	87201170	-	Saro_3158	-	hypothetical protein
3145	 68.77	+1	3371606..3372700	+	364	87201171	-	Saro_3159	-	hypothetical protein
3146	 67.19	0	3372723..3373298	+	191	87201172	-	Saro_3160	-	beta-Ig-H3/fasciclin
3147	 66.15	0	3373450..3375000	+	516	87201173	-	Saro_3161	-	acyl-CoA synthetase
3148	 67.05	0	3375020..3376312	+	430	87201174	-	Saro_3162	-	cytochrome P450
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.