IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3019	 69.39	+1	3244497..3246293	+	598	87201045	-	Saro_3033	-	ABC transporter related
3020	 69.16	+1	3246286..3246966	+	226	87201046	-	Saro_3034	-	hypothetical protein
3021	 68.09	0	3247022..3249055	+	677	87201047	-	Saro_3035	-	sulfotransferase
3022	 63.06	0	3249171..3251885	-	904	87201048	-	Saro_3036	-	TonB-dependent receptor
3023	 63.24	0	3252293..3252730	-	145	87201049	-	Saro_3037	-	glyoxalase/bleomycin resistance protein/dioxygenase
3024	 69.04	+1	3252814..3253572	+	252	87201050	-	Saro_3038	-	hypothetical protein
3025	 64.37	0	3253707..3254489	-	260	87201051	-	Saro_3039	-	hypothetical protein
3026	 65.18	0	3254703..3255509	+	268	87201052	-	Saro_3040	-	metallophosphoesterase
3027	 59.67	-1	3255584..3255883	+	99	87201053	-	Saro_3041	-	hypothetical protein
3028	 64.57	0	3255880..3258405	+	841	87201054	-	Saro_3042	-	TonB-dependent receptor
3029	 64.04	0	3258473..3259195	-	240	87201055	-	Saro_3043	-	monofunctional biosynthetic peptidoglycan transglycosylase
3030	 63.36	0	3259345..3260040	+	231	87201056	-	Saro_3044	-	hypothetical protein
3031	 62.56	0	3260186..3261085	-	299	87201057	-	Saro_3045	-	RNA polymerase factor sigma-32
3032	 67.07	0	3261197..3262195	-	332	87201058	-	Saro_3046	-	ribosomal large subunit pseudouridine synthase D
3033	 67.52	0	3262218..3263393	-	391	87201059	-	Saro_3047	-	carbohydrate-selective porin OprB
3034	 67.77	0	3263390..3265195	-	601	87201060	-	Saro_3048	-	methyl-accepting chemotaxis sensory transducer
3035	 68.58	+1	3265252..3265722	+	156	87201061	-	Saro_3049	-	PAD1/JAB1 superfamily metal-dependent protease
3036	 69.00	+1	3265879..3266520	+	213	87201062	-	Saro_3050	-	hypothetical protein
3037	 66.95	0	3266537..3267241	+	234	87201063	-	Saro_3051	-	negative regulator of AmpC, AmpD
3038	 67.82	0	3267702..3268658	+	318	87201064	-	Saro_3052	-	cation diffusion facilitator family transporter
3039	 64.58	0	3269011..3269586	+	191	87201065	-	Saro_3053	-	beta-Ig-H3/fasciclin
3040	 61.58	-1	3269818..3271074	-	418	87201066	clpX	Saro_3054	-	ATP-dependent protease ATP-binding subunit
3041	 64.83	0	3271222..3271929	-	235	87201067	-	Saro_3055	-	ATP-dependent Clp protease proteolytic subunit ClpP
3042	 66.67	0	3272069..3272734	-	221	87201068	-	Saro_3056	-	hypothetical protein
3043	 67.51	0	3272946..3274487	+	513	87201069	-	Saro_3057	-	amidase
3044	 72.43	+2	3274468..3275265	-	265	87201070	-	Saro_3058	-	hypothetical protein
3045	 64.72	0	3275439..3276980	-	513	87201071	tig	Saro_3059	-	trigger factor
3046	 67.20	0	3277719..3279596	-	625	87201072	-	Saro_3060	-	signal peptide peptidase SppA, 67K type
3047	 65.69	0	3279684..3280709	+	341	87201073	pyrB	Saro_3061	-	aspartate carbamoyltransferase catalytic subunit
3048	 71.38	+1	3280706..3281935	+	409	87201074	-	Saro_3062	-	dihydroorotase
3049	 71.50	+1	3282003..3283325	-	440	87201075	-	Saro_3063	-	tetratricopeptide TPR_4
3050	 68.02	0	3283348..3283863	-	171	87201076	-	Saro_3064	-	hypothetical protein
3051	 67.36	0	3283877..3284602	-	241	87201077	-	Saro_3065	-	cobyrinic acid a,c-diamide synthase
3052	 70.05	+1	3284809..3286107	+	432	87201078	-	Saro_3066	-	Sel1 repeat-containing protein
3053	 69.05	+1	3286112..3287326	+	404	87201079	-	Saro_3067	-	hypothetical protein
3054	 65.91	0	3287258..3288442	-	394	87201080	-	Saro_3068	-	phospholipase D/transphosphatidylase
3055	 67.58	0	3288488..3289687	+	399	87201081	-	Saro_3069	-	glycosyl transferase, group 1
3056	 64.21	0	3289801..3290493	+	230	87201082	-	Saro_3070	-	ErfK/YbiS/YcfS/YnhG
3057	 66.16	0	3290531..3291325	-	264	87201083	-	Saro_3071	-	short chain dehydrogenase
3058	 67.18	0	3291337..3292119	-	260	87201084	-	Saro_3072	-	short-chain dehydrogenase/reductase SDR
3059	 65.45	0	3292116..3293099	-	327	87201085	-	Saro_3073	-	2-nitropropane dioxygenase, NPD
3060	 66.94	0	3293161..3293895	-	244	87201086	-	Saro_3074	-	sigma 28 (flagella/sporulation)
3061	 67.28	0	3294076..3296196	+	706	87201087	-	Saro_3075	-	TonB-dependent receptor
3062	 65.37	0	3296225..3296455	-	76	87201088	-	Saro_3076	-	hypothetical protein
3063	 63.02	0	3296634..3296825	-	63	87201089	-	Saro_3077	-	hypothetical protein
3064	 67.19	0	3296966..3297730	-	254	87201090	-	Saro_3078	-	hypothetical protein
3065	 72.06	+2	3297734..3298048	-	104	87201091	-	Saro_3079	-	hypothetical protein
3066	 64.58	0	3298573..3299244	+	223	87201092	-	Saro_3080	-	glutathione S-transferase-like
3067	 69.35	+1	3299458..3300390	-	310	87201093	-	Saro_3081	-	NAD-dependent epimerase/dehydratase
3068	 68.36	0	3301191..3302078	-	295	87201094	-	Saro_3082	-	protein tyrosine/serine phosphatase
3069	 68.59	+1	3302081..3302860	-	259	87201095	-	Saro_3083	-	short-chain dehydrogenase/reductase SDR
3070	 64.75	0	3302873..3305065	-	730	87201096	-	Saro_3084	-	TonB-dependent receptor
3071	 68.36	0	3305260..3305907	+	215	87201097	-	Saro_3085	-	TetR family transcriptional regulator
3072	 53.91	-2	3306108..3306593	-	161	87201098	-	Saro_3086	-	hypothetical protein
3073	 61.42	-1	3307181..3308095	+	304	87201099	-	Saro_3087	-	taurine catabolism dioxygenase TauD/TfdA
3074	 63.81	0	3308092..3309804	+	570	87201100	-	Saro_3088	-	dihydroorotase
3075	 63.15	0	3309817..3311067	-	416	87201101	-	Saro_3089	-	LuxR family transcriptional regulator
3076	 60.98	-1	3311225..3311611	+	128	87201102	-	Saro_3090	-	endoribonuclease L-PSP
3077	 53.77	-2	3311811..3312593	-	260	87201103	-	Saro_3091	-	hypothetical protein
3078	 68.65	+1	3312771..3313274	-	167	87201104	-	Saro_3092	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3079	 65.72	0	3313271..3314119	-	282	87201105	-	Saro_3093	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3080	 67.25	0	3314172..3315026	-	284	87201106	-	Saro_3094	-	hypothetical protein
3081	 64.25	0	3315106..3315642	+	178	87201107	-	Saro_3095	-	peptide methionine sulfoxide reductase
3082	 73.02	+2	3315639..3316898	-	419	87201108	-	Saro_3096	-	Fmu (Sun)
3083	 65.86	0	3316897..3317145	+	82	87201109	-	Saro_3097	-	hypothetical protein
3084	 67.91	0	3317166..3317648	-	160	87201110	-	Saro_3098	-	hypothetical protein
3085	 68.90	+1	3317633..3319111	-	492	87201111	-	Saro_3099	-	extracellular solute-binding protein
3086	 65.36	0	3319158..3319541	-	127	87201112	-	Saro_3100	-	hypothetical protein
3087	 61.00	-1	3319699..3320157	-	152	87201113	-	Saro_3101	-	TraR/DksA family transcriptional regulator
3088	 67.54	0	3320452..3320796	+	114	87201114	-	Saro_3102	-	Sel1 repeat-containing protein
3089	 66.49	0	3320807..3321937	-	376	87201115	-	Saro_3103	-	hypothetical protein
3090	 69.92	+1	3321945..3322712	-	255	87201116	-	Saro_3104	-	glycerophosphoryl diester phosphodiesterase
3091	 68.80	+1	3322693..3323160	-	155	87201117	-	Saro_3105	-	endoribonuclease L-PSP
3092	 63.33	0	3323157..3323786	-	209	87201118	-	Saro_3106	-	hypothetical protein
3093	 65.70	0	3323783..3323989	-	68	87201119	-	Saro_3107	-	hypothetical protein
3094	 60.43	-1	3324128..3324496	+	122	87201120	-	Saro_3108	-	response regulator receiver protein
3095	 59.66	-1	3324517..3325101	-	194	87201121	-	Saro_3109	-	hypothetical protein
3096	 60.42	-1	3325240..3325479	+	79	87201122	-	Saro_3110	-	hypothetical protein
3097	 64.17	0	3325484..3326683	+	399	87201123	-	Saro_3111	-	serine palmitoyltransferase
3098	 67.94	0	3326683..3327546	+	287	87201124	-	Saro_3112	-	lipolytic enzyme, G-D-S-L
3099	 69.03	+1	3327559..3328107	-	182	87201125	-	Saro_3113	-	ribosomal large subunit pseudouridine synthase E
3100	 65.30	0	3328116..3328772	-	218	87201126	-	Saro_3114	-	glutathione S-transferase-like
3101	 70.01	+1	3328925..3329791	+	288	87201127	-	Saro_3115	-	MltA-interacting MipA
3102	 64.81	0	3329801..3330448	-	215	87201128	-	Saro_3116	-	hypothetical protein
3103	 68.66	+1	3330666..3331166	+	166	87201129	-	Saro_3117	-	hypothetical protein
3104	 70.29	+1	3331159..3332481	+	440	87201130	-	Saro_3118	-	hypothetical protein
3105	 68.80	+1	3332560..3333729	+	389	87201131	-	Saro_3119	-	Phage portal protein, HK97
3106	 69.58	+1	3333726..3334034	+	102	87201132	-	Saro_3120	-	hypothetical protein
3107	 69.54	+1	3334031..3334483	+	150	87201133	-	Saro_3121	-	prohead peptidase
3108	 66.84	0	3334561..3335703	+	380	87201134	-	Saro_3122	-	phage major capsid protein, HK97
3109	 69.93	+1	3335824..3336375	+	183	87201135	-	Saro_3123	-	phiE125 gp8 hypothetical protein
3110	 70.20	+1	3336535..3336930	+	131	87201136	-	Saro_3124	-	hypothetical protein
3111	 64.46	0	3336959..3337366	+	135	87201137	-	Saro_3125	-	Phage major tail protein, TP901-1
3112	 71.11	+1	3337366..3337680	+	104	87201138	-	Saro_3126	-	hypothetical protein
3113	 70.63	+1	3337626..3337877	+	83	87201139	-	Saro_3127	-	hypothetical protein
3114	 68.90	+1	3337867..3338448	+	193	87201140	-	Saro_3128	-	hypothetical protein
3115	 66.28	0	3338468..3340807	+	779	87201141	-	Saro_3129	-	hypothetical protein
3116	 68.00	0	3340804..3341625	+	273	87201142	-	Saro_3130	-	phage protein
3117	 66.41	0	3341622..3342017	+	131	87201143	-	Saro_3131	-	hypothetical protein
3118	 67.44	0	3342011..3344215	+	734	87201144	-	Saro_3132	-	hypothetical protein
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.