IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
250	 66.49	0	262402..264123	+	573	87198276	-	Saro_0251	-	flavin-containing monooxygenase FMO
251	 66.31	0	264168..265013	-	281	87198277	-	Saro_0252	-	short-chain dehydrogenase/reductase SDR
252	 70.87	+1	265107..266273	-	388	87198278	-	Saro_0253	-	hypothetical protein
253	 65.47	0	266331..267662	-	443	87198279	-	Saro_0254	-	FAD dependent oxidoreductase
254	 57.77	-2	268306..269598	+	430	87198280	-	Saro_0255	-	phage integrase
255	 55.67	-2	269577..269876	-	99	87198281	-	Saro_0256	-	hypothetical protein
256	 61.60	-1	270703..271512	-	269	87198282	-	Saro_0257	-	hypothetical protein
257	 56.04	-2	271746..272366	-	206	87198283	-	Saro_0258	-	hypothetical protein
258	 60.76	-1	272477..273949	+	490	87198284	-	Saro_0259	-	ADP-ribosyl-(dinitrogen reductase) hydrolase
259	 58.33	-2	274181..276076	+	631	87198285	-	Saro_0260	-	protein of unknown function DUF1524 RloF
260	 56.08	-2	276073..278802	+	909	87198286	-	Saro_0261	-	type II restriction enzyme, methylase subunit
261	 59.07	-1	278799..279641	+	280	87198287	-	Saro_0262	-	hypothetical protein
262	 54.37	-2	279989..281029	+	346	87198288	-	Saro_0263	-	hypothetical protein
263	 60.19	-1	281100..283169	+	689	87198289	-	Saro_0264	-	hypothetical protein
264	 59.61	-1	283162..284337	+	391	87198290	-	Saro_0265	-	hypothetical protein
265	 68.21	0	284887..285792	+	301	87198291	-	Saro_0266	-	thioredoxin
266	 67.46	0	285798..286427	+	209	87198292	-	Saro_0267	-	peptidase S16, lon-like
267	 66.51	0	286443..287063	-	206	87198293	-	Saro_0268	-	multiple antibiotic resistance (MarC)-related proteins
268	 70.67	+1	287068..287892	-	274	87198294	-	Saro_0269	-	hypothetical protein
269	 65.53	0	287952..288215	-	87	87198295	-	Saro_0270	-	hypothetical protein
270	 61.74	-1	288402..289457	-	351	87198296	nrdF	Saro_0271	-	ribonucleotide-diphosphate reductase subunit beta
271	 63.74	0	289903..290175	+	90	87198297	-	Saro_0272	-	hypothetical protein
272	 63.76	0	290466..290843	-	125	87198298	-	Saro_0273	-	hypothetical protein
273	 64.67	0	291083..293086	-	667	87198299	-	Saro_0274	-	ribonucleotide-diphosphate reductase subunit alpha
274	 66.27	0	293585..293833	+	82	87198300	-	Saro_0275	-	transmembrane region and signal peptide prediction
275	 71.17	+1	293861..295369	-	502	87198301	-	Saro_0276	-	Mg chelatase-related protein
276	 69.93	+1	295554..296258	+	234	87198302	-	Saro_0277	-	hypothetical protein
277	 67.41	0	296295..299132	-	945	87198303	-	Saro_0278	-	DNA polymerase I
278	 66.67	0	299427..299615	+	62	87198304	-	Saro_0279	-	hypothetical protein
279	 67.61	0	299871..300932	-	353	87198305	-	Saro_0280	-	Beta-lactamase
280	 71.85	+2	301057..302388	+	443	87198306	-	Saro_0281	-	aminoglycoside phosphotransferase
281	 66.67	0	302388..303689	+	433	87198307	-	Saro_0282	-	acyl-CoA dehydrogenase-like
282	 69.04	+1	303724..304314	-	196	87198308	-	Saro_0283	-	hypothetical protein
283	 66.42	0	304519..305724	-	401	87198309	-	Saro_0284	-	S-adenosylmethionine synthetase
284	 69.53	+1	305765..307333	-	522	87198310	-	Saro_0285	-	apolipoprotein N-acyltransferase
285	 68.52	+1	307416..308438	-	340	87198311	-	Saro_0286	-	hypothetical protein
286	 69.63	+1	308535..309410	-	291	87198312	-	Saro_0287	-	HemK family modification methylase
287	 69.39	+1	309482..310546	-	354	87198313	-	Saro_0288	-	peptide chain release factor 1
288	 67.62	0	310668..311927	-	419	87198314	-	Saro_0289	-	histidyl-tRNA synthetase
289	 65.44	0	312028..313980	+	650	87198315	-	Saro_0290	-	glycyl aminopeptidase
290	 63.90	0	313985..314635	+	216	87198316	-	Saro_0291	-	hypothetical protein
291	 64.63	0	314790..315329	+	179	87198317	-	Saro_0292	-	inorganic diphosphatase
292	 69.05	+1	315351..316694	-	447	87198318	-	Saro_0293	-	MscS mechanosensitive ion channel
293	 70.23	+1	316744..318090	-	448	87198319	-	Saro_0294	-	microcin-processing peptidase 1
294	 61.90	-1	318152..318571	-	139	87198320	-	Saro_0295	-	hypothetical protein
295	 65.05	0	318701..319504	+	267	87198321	-	Saro_0296	-	ABC transporter related
296	 67.94	0	319545..321041	+	498	87198322	-	Saro_0297	-	RNA polymerase factor sigma-54
297	 67.01	0	321137..322000	-	287	87198323	-	Saro_0298	-	metallophosphoesterase
298	 66.56	0	322022..323905	-	627	87198324	-	Saro_0299	-	hypothetical protein
299	 66.11	0	323913..324809	-	298	87198325	-	Saro_0300	-	hypothetical protein
300	 65.85	0	324814..327390	-	858	87198326	-	Saro_0301	-	cyclic nucleotide-binding domain-containing protein
301	 67.36	0	327631..328644	+	337	87198327	-	Saro_0302	-	TPR repeat-containing protein
302	 60.83	-1	328963..329664	+	233	87198328	-	Saro_0303	-	two component transcriptional regulator
303	 63.49	0	329740..330588	-	282	87198329	-	Saro_0304	-	LuxR family transcriptional regulator
304	 67.22	0	330670..331386	+	238	87198330	trmB	Saro_0305	-	tRNA (guanine-N(7))-methyltransferase
305	 61.64	-1	331516..332769	+	417	87198331	-	Saro_0306	-	phage integrase
306	 62.43	0	333031..333927	+	298	87198332	-	Saro_0307	-	LysR family transcriptional regulator
307	 68.44	0	333915..334139	-	74	87198333	-	Saro_0308	-	hypothetical protein
308	 71.09	+1	334136..335332	-	398	87198334	-	Saro_0309	-	conjugation TrbI-like protein
309	 68.80	+1	335329..336360	-	343	87198335	-	Saro_0310	-	conjugal transfer protein TrbG/VirB9/CagX
310	 66.37	0	336357..337040	-	227	87198336	-	Saro_0311	-	conjugal transfer protein
311	 66.74	0	337044..338354	-	436	87198337	-	Saro_0312	-	TrbL/VirB6 plasmid conjugal transfer protein
312	 68.54	+1	338356..338676	-	106	87198338	-	Saro_0313	-	hypothetical protein
313	 67.44	0	338682..339458	-	258	87198339	-	Saro_0314	-	putative conjugal transfer protein TrbJ
314	 66.99	0	339464..341929	-	821	87198340	-	Saro_0315	-	CagE, TrbE, VirB component of type IV transporter system
315	 71.38	+1	341936..342211	-	91	87198341	-	Saro_0316	-	conjugal transfer protein TrbD
316	 66.07	0	342211..342543	-	110	87198342	-	Saro_0317	-	conjugal transfer protein TrbC
317	 70.02	+1	342540..343523	-	327	87198343	-	Saro_0318	-	type II secretion system protein E
318	 66.15	0	343777..344160	-	127	87198344	-	Saro_0319	-	hypothetical protein
319	 62.99	0	344157..346142	-	661	87198345	-	Saro_0320	-	TRAG protein
320	 55.56	-2	346387..346593	+	68	87198346	-	Saro_0321	-	hypothetical protein
321	 62.88	0	347120..347647	-	175	87198347	-	Saro_0322	-	adenosylcobinamide kinase
322	 64.91	0	347644..349119	-	491	87198348	-	Saro_0323	-	adenosylcobyric acid synthase (glutamine-hydrolysing)
323	 66.77	0	349119..350069	-	316	87198349	-	Saro_0324	-	adenosylcobinamide-phosphate synthase
324	 67.48	0	350062..351045	-	327	87198350	-	Saro_0325	-	aminotransferase
325	 65.86	0	351042..351782	-	246	87198351	-	Saro_0326	-	cobalamin-5'-phosphate synthase
326	 67.54	0	351779..352348	-	189	87198352	-	Saro_0327	-	phosphoglycerate/bisphosphoglycerate mutase
327	 68.63	+1	352345..353361	-	338	87198353	-	Saro_0328	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
328	 67.40	0	353358..353765	-	135	87198354	-	Saro_0329	-	hypothetical protein
329	 65.00	0	353791..354390	-	199	87198355	-	Saro_0330	-	Cob(II)yrinic acid a,c-diamide reductase
330	 60.77	-1	354453..355079	-	208	87198356	-	Saro_0331	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
331	 65.49	0	355069..355833	-	254	87198357	-	Saro_0332	-	precorrin 6A synthase
332	 68.01	0	355830..357164	-	444	87198358	-	Saro_0333	-	cobyrinic acid a,c-diamide synthase
333	 68.58	+1	357161..357946	-	261	87198359	-	Saro_0334	-	precorrin-4 C11-methyltransferase
334	 70.60	+1	357943..358323	-	126	87198360	-	Saro_0335	-	precorrin methylase
335	 68.33	0	358320..359519	-	399	87198361	-	Saro_0336	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
336	 68.77	+1	359527..360288	+	253	87198362	-	Saro_0337	-	cobalt-precorrin-6x reductase
337	 66.54	0	360252..361040	-	262	87198363	-	Saro_0338	-	precorrin-3 methyltransferase
338	 64.77	0	361037..361774	-	245	87198364	-	Saro_0339	-	precorrin-2 C20-methyltransferase
339	 66.83	0	361771..362400	-	209	87198365	cobH	Saro_0340	-	precorrin-8X methylmutase
340	 68.24	0	362400..363545	-	381	87198366	-	Saro_0341	-	precorrin-3B synthase
341	 67.49	0	363542..366826	-	1094	87198367	cobN	Saro_0342	-	cobaltochelatase
342	 65.62	0	366837..367889	-	350	87198368	-	Saro_0343	-	cobalamin biosynthesis CobW
343	 58.78	-2	368386..369501	-	371	87198369	-	Saro_0344	-	high-affinity nickel-transporter
344	 58.91	-1	369514..371550	-	678	87198370	-	Saro_0345	-	TonB-dependent receptor
345	 61.92	-1	372308..373762	+	484	87198371	-	Saro_0346	-	hypothetical protein
346	 61.01	-1	373704..374039	-	111	87198372	-	Saro_0347	-	hypothetical protein
347	 63.40	0	374343..375047	+	234	87198373	-	Saro_0348	-	hypothetical protein
348	 66.13	0	375088..376569	+	493	87198374	-	Saro_0349	-	hypothetical protein
349	 64.73	0	376858..378921	+	687	87198375	-	Saro_0350	-	McrBC 5-methylcytosine restriction system component-like
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.