version 1.0
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 250 66.49 0 262402..264123 + 573 87198276 - Saro_0251 - flavin-containing monooxygenase FMO 251 66.31 0 264168..265013 - 281 87198277 - Saro_0252 - short-chain dehydrogenase/reductase SDR 252 70.87 +1 265107..266273 - 388 87198278 - Saro_0253 - hypothetical protein 253 65.47 0 266331..267662 - 443 87198279 - Saro_0254 - FAD dependent oxidoreductase 254 57.77 -2 268306..269598 + 430 87198280 - Saro_0255 - phage integrase 255 55.67 -2 269577..269876 - 99 87198281 - Saro_0256 - hypothetical protein 256 61.60 -1 270703..271512 - 269 87198282 - Saro_0257 - hypothetical protein 257 56.04 -2 271746..272366 - 206 87198283 - Saro_0258 - hypothetical protein 258 60.76 -1 272477..273949 + 490 87198284 - Saro_0259 - ADP-ribosyl-(dinitrogen reductase) hydrolase 259 58.33 -2 274181..276076 + 631 87198285 - Saro_0260 - protein of unknown function DUF1524 RloF 260 56.08 -2 276073..278802 + 909 87198286 - Saro_0261 - type II restriction enzyme, methylase subunit 261 59.07 -1 278799..279641 + 280 87198287 - Saro_0262 - hypothetical protein 262 54.37 -2 279989..281029 + 346 87198288 - Saro_0263 - hypothetical protein 263 60.19 -1 281100..283169 + 689 87198289 - Saro_0264 - hypothetical protein 264 59.61 -1 283162..284337 + 391 87198290 - Saro_0265 - hypothetical protein 265 68.21 0 284887..285792 + 301 87198291 - Saro_0266 - thioredoxin 266 67.46 0 285798..286427 + 209 87198292 - Saro_0267 - peptidase S16, lon-like 267 66.51 0 286443..287063 - 206 87198293 - Saro_0268 - multiple antibiotic resistance (MarC)-related proteins 268 70.67 +1 287068..287892 - 274 87198294 - Saro_0269 - hypothetical protein 269 65.53 0 287952..288215 - 87 87198295 - Saro_0270 - hypothetical protein 270 61.74 -1 288402..289457 - 351 87198296 nrdF Saro_0271 - ribonucleotide-diphosphate reductase subunit beta 271 63.74 0 289903..290175 + 90 87198297 - Saro_0272 - hypothetical protein 272 63.76 0 290466..290843 - 125 87198298 - Saro_0273 - hypothetical protein 273 64.67 0 291083..293086 - 667 87198299 - Saro_0274 - ribonucleotide-diphosphate reductase subunit alpha 274 66.27 0 293585..293833 + 82 87198300 - Saro_0275 - transmembrane region and signal peptide prediction 275 71.17 +1 293861..295369 - 502 87198301 - Saro_0276 - Mg chelatase-related protein 276 69.93 +1 295554..296258 + 234 87198302 - Saro_0277 - hypothetical protein 277 67.41 0 296295..299132 - 945 87198303 - Saro_0278 - DNA polymerase I 278 66.67 0 299427..299615 + 62 87198304 - Saro_0279 - hypothetical protein 279 67.61 0 299871..300932 - 353 87198305 - Saro_0280 - Beta-lactamase 280 71.85 +2 301057..302388 + 443 87198306 - Saro_0281 - aminoglycoside phosphotransferase 281 66.67 0 302388..303689 + 433 87198307 - Saro_0282 - acyl-CoA dehydrogenase-like 282 69.04 +1 303724..304314 - 196 87198308 - Saro_0283 - hypothetical protein 283 66.42 0 304519..305724 - 401 87198309 - Saro_0284 - S-adenosylmethionine synthetase 284 69.53 +1 305765..307333 - 522 87198310 - Saro_0285 - apolipoprotein N-acyltransferase 285 68.52 +1 307416..308438 - 340 87198311 - Saro_0286 - hypothetical protein 286 69.63 +1 308535..309410 - 291 87198312 - Saro_0287 - HemK family modification methylase 287 69.39 +1 309482..310546 - 354 87198313 - Saro_0288 - peptide chain release factor 1 288 67.62 0 310668..311927 - 419 87198314 - Saro_0289 - histidyl-tRNA synthetase 289 65.44 0 312028..313980 + 650 87198315 - Saro_0290 - glycyl aminopeptidase 290 63.90 0 313985..314635 + 216 87198316 - Saro_0291 - hypothetical protein 291 64.63 0 314790..315329 + 179 87198317 - Saro_0292 - inorganic diphosphatase 292 69.05 +1 315351..316694 - 447 87198318 - Saro_0293 - MscS mechanosensitive ion channel 293 70.23 +1 316744..318090 - 448 87198319 - Saro_0294 - microcin-processing peptidase 1 294 61.90 -1 318152..318571 - 139 87198320 - Saro_0295 - hypothetical protein 295 65.05 0 318701..319504 + 267 87198321 - Saro_0296 - ABC transporter related 296 67.94 0 319545..321041 + 498 87198322 - Saro_0297 - RNA polymerase factor sigma-54 297 67.01 0 321137..322000 - 287 87198323 - Saro_0298 - metallophosphoesterase 298 66.56 0 322022..323905 - 627 87198324 - Saro_0299 - hypothetical protein 299 66.11 0 323913..324809 - 298 87198325 - Saro_0300 - hypothetical protein 300 65.85 0 324814..327390 - 858 87198326 - Saro_0301 - cyclic nucleotide-binding domain-containing protein 301 67.36 0 327631..328644 + 337 87198327 - Saro_0302 - TPR repeat-containing protein 302 60.83 -1 328963..329664 + 233 87198328 - Saro_0303 - two component transcriptional regulator 303 63.49 0 329740..330588 - 282 87198329 - Saro_0304 - LuxR family transcriptional regulator 304 67.22 0 330670..331386 + 238 87198330 trmB Saro_0305 - tRNA (guanine-N(7))-methyltransferase 305 61.64 -1 331516..332769 + 417 87198331 - Saro_0306 - phage integrase 306 62.43 0 333031..333927 + 298 87198332 - Saro_0307 - LysR family transcriptional regulator 307 68.44 0 333915..334139 - 74 87198333 - Saro_0308 - hypothetical protein 308 71.09 +1 334136..335332 - 398 87198334 - Saro_0309 - conjugation TrbI-like protein 309 68.80 +1 335329..336360 - 343 87198335 - Saro_0310 - conjugal transfer protein TrbG/VirB9/CagX 310 66.37 0 336357..337040 - 227 87198336 - Saro_0311 - conjugal transfer protein 311 66.74 0 337044..338354 - 436 87198337 - Saro_0312 - TrbL/VirB6 plasmid conjugal transfer protein 312 68.54 +1 338356..338676 - 106 87198338 - Saro_0313 - hypothetical protein 313 67.44 0 338682..339458 - 258 87198339 - Saro_0314 - putative conjugal transfer protein TrbJ 314 66.99 0 339464..341929 - 821 87198340 - Saro_0315 - CagE, TrbE, VirB component of type IV transporter system 315 71.38 +1 341936..342211 - 91 87198341 - Saro_0316 - conjugal transfer protein TrbD 316 66.07 0 342211..342543 - 110 87198342 - Saro_0317 - conjugal transfer protein TrbC 317 70.02 +1 342540..343523 - 327 87198343 - Saro_0318 - type II secretion system protein E 318 66.15 0 343777..344160 - 127 87198344 - Saro_0319 - hypothetical protein 319 62.99 0 344157..346142 - 661 87198345 - Saro_0320 - TRAG protein 320 55.56 -2 346387..346593 + 68 87198346 - Saro_0321 - hypothetical protein 321 62.88 0 347120..347647 - 175 87198347 - Saro_0322 - adenosylcobinamide kinase 322 64.91 0 347644..349119 - 491 87198348 - Saro_0323 - adenosylcobyric acid synthase (glutamine-hydrolysing) 323 66.77 0 349119..350069 - 316 87198349 - Saro_0324 - adenosylcobinamide-phosphate synthase 324 67.48 0 350062..351045 - 327 87198350 - Saro_0325 - aminotransferase 325 65.86 0 351042..351782 - 246 87198351 - Saro_0326 - cobalamin-5'-phosphate synthase 326 67.54 0 351779..352348 - 189 87198352 - Saro_0327 - phosphoglycerate/bisphosphoglycerate mutase 327 68.63 +1 352345..353361 - 338 87198353 - Saro_0328 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 328 67.40 0 353358..353765 - 135 87198354 - Saro_0329 - hypothetical protein 329 65.00 0 353791..354390 - 199 87198355 - Saro_0330 - Cob(II)yrinic acid a,c-diamide reductase 330 60.77 -1 354453..355079 - 208 87198356 - Saro_0331 - cob(I)yrinic acid a,c-diamide adenosyltransferase 331 65.49 0 355069..355833 - 254 87198357 - Saro_0332 - precorrin 6A synthase 332 68.01 0 355830..357164 - 444 87198358 - Saro_0333 - cobyrinic acid a,c-diamide synthase 333 68.58 +1 357161..357946 - 261 87198359 - Saro_0334 - precorrin-4 C11-methyltransferase 334 70.60 +1 357943..358323 - 126 87198360 - Saro_0335 - precorrin methylase 335 68.33 0 358320..359519 - 399 87198361 - Saro_0336 - precorrin-6Y C5,15-methyltransferase (decarboxylating) 336 68.77 +1 359527..360288 + 253 87198362 - Saro_0337 - cobalt-precorrin-6x reductase 337 66.54 0 360252..361040 - 262 87198363 - Saro_0338 - precorrin-3 methyltransferase 338 64.77 0 361037..361774 - 245 87198364 - Saro_0339 - precorrin-2 C20-methyltransferase 339 66.83 0 361771..362400 - 209 87198365 cobH Saro_0340 - precorrin-8X methylmutase 340 68.24 0 362400..363545 - 381 87198366 - Saro_0341 - precorrin-3B synthase 341 67.49 0 363542..366826 - 1094 87198367 cobN Saro_0342 - cobaltochelatase 342 65.62 0 366837..367889 - 350 87198368 - Saro_0343 - cobalamin biosynthesis CobW 343 58.78 -2 368386..369501 - 371 87198369 - Saro_0344 - high-affinity nickel-transporter 344 58.91 -1 369514..371550 - 678 87198370 - Saro_0345 - TonB-dependent receptor 345 61.92 -1 372308..373762 + 484 87198371 - Saro_0346 - hypothetical protein 346 61.01 -1 373704..374039 - 111 87198372 - Saro_0347 - hypothetical protein 347 63.40 0 374343..375047 + 234 87198373 - Saro_0348 - hypothetical protein 348 66.13 0 375088..376569 + 493 87198374 - Saro_0349 - hypothetical protein 349 64.73 0 376858..378921 + 687 87198375 - Saro_0350 - McrBC 5-methylcytosine restriction system component-like 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0