IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2829	 68.41	0	3066845..3067417	-	190	87200855	-	Saro_2842	-	hypothetical protein
2830	 65.52	0	3067432..3068391	-	319	87200856	-	Saro_2843	-	hypothetical protein
2831	 67.11	0	3068402..3069304	-	300	87200857	-	Saro_2844	-	ABC transporter related
2832	 65.59	0	3069304..3070422	-	372	87200858	-	Saro_2845	-	hypothetical protein
2833	 65.23	0	3070572..3073286	+	904	87200859	-	Saro_2846	-	valyl-tRNA synthetase
2834	 68.01	0	3073305..3074048	+	247	87200860	-	Saro_2847	-	radical SAM family protein
2835	 67.57	0	3074150..3074701	-	183	87200861	-	Saro_2848	-	single-strand binding protein
2836	 67.69	0	3074799..3076655	-	618	87200862	-	Saro_2849	-	ferrous iron transport protein B
2837	 70.16	+1	3076652..3076909	-	85	87200863	-	Saro_2850	-	hypothetical protein
2838	 68.04	0	3076998..3077651	-	217	87200864	-	Saro_2851	-	RpsU-divergently transcribed
2839	 67.15	0	3077665..3078282	-	205	87200865	-	Saro_2852	-	ankyrin
2840	 66.83	0	3078375..3078989	+	204	87200866	-	Saro_2853	-	electron transport protein SCO1/SenC
2841	 68.14	0	3078997..3079470	+	157	87200867	-	Saro_2854	-	hypothetical protein
2842	 72.07	+2	3079463..3080221	+	252	87200868	-	Saro_2855	-	hypothetical protein
2843	 66.06	0	3080262..3080753	+	163	87200869	-	Saro_2856	-	hypothetical protein
2844	 72.12	+2	3080750..3081721	+	323	87200870	-	Saro_2857	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2845	 64.58	0	3081734..3082357	+	207	87200871	-	Saro_2858	-	riboflavin synthase subunit alpha
2846	 66.37	0	3082415..3083083	-	222	87200872	-	Saro_2859	-	hypothetical protein
2847	 67.23	0	3083086..3083970	-	294	87200873	-	Saro_2860	-	methylenetetrahydrofolate reductase
2848	 62.88	0	3084044..3085444	-	466	87200874	-	Saro_2861	-	aminomethyltransferase
2849	 63.04	0	3085570..3086424	+	284	87200875	purU	Saro_2862	-	formyltetrahydrofolate deformylase
2850	 63.43	0	3086505..3086906	+	133	87200876	-	Saro_2863	-	glyoxalase/bleomycin resistance protein/dioxygenase
2851	 66.40	0	3087013..3087750	-	245	87200877	-	Saro_2864	-	alpha/beta hydrolase
2852	 62.81	0	3087750..3088526	-	258	87200878	-	Saro_2865	-	glutathione S-transferase-like
2853	 68.93	+1	3088531..3089280	-	249	87200879	-	Saro_2866	-	short-chain dehydrogenase/reductase SDR
2854	 66.23	0	3089277..3089738	-	153	87200880	-	Saro_2867	-	hypothetical protein
2855	 61.51	-1	3089774..3090646	-	290	87200881	-	Saro_2868	-	amidohydrolase 2
2856	 66.14	0	3090707..3092221	-	504	87200882	-	Saro_2869	-	aldehyde dehydrogenase (acceptor)
2857	 66.38	0	3092342..3094459	-	705	87200883	-	Saro_2870	-	Pyrrolo-quinoline quinone
2858	 64.62	0	3094493..3096058	-	521	87200884	-	Saro_2871	-	AMP-dependent synthetase and ligase
2859	 67.68	0	3096062..3096847	-	261	87200885	-	Saro_2872	-	glutathione S-transferase-like
2860	 62.00	-1	3096844..3097614	-	256	87200886	-	Saro_2873	-	glutathione S-transferase-like
2861	 71.82	+2	3097877..3098245	-	122	87200887	-	Saro_2874	-	twin-arginine translocation pathway signal
2862	 66.67	0	3098245..3098649	-	134	87200888	-	Saro_2875	-	hypothetical protein
2863	 65.66	0	3098651..3100237	-	528	87200889	-	Saro_2876	-	FAD linked oxidase-like
2864	 65.06	0	3100344..3100841	-	165	87200890	-	Saro_2877	-	hypothetical protein
2865	 67.49	0	3100898..3103081	-	727	87200891	-	Saro_2878	-	Pyrrolo-quinoline quinone
2866	 63.29	0	3103078..3103935	-	285	87200892	-	Saro_2879	-	hypothetical protein
2867	 62.82	0	3104026..3104415	+	129	87200893	-	Saro_2880	-	hypothetical protein
2868	 62.47	0	3104429..3104881	+	150	87200894	-	Saro_2881	-	hypothetical protein
2869	 66.13	0	3104889..3105629	+	246	87200895	-	Saro_2882	-	short-chain dehydrogenase/reductase SDR
2870	 68.10	0	3105644..3105853	-	69	87200896	-	Saro_2883	-	hypothetical protein
2871	 64.81	0	3105921..3106835	-	304	87200897	-	Saro_2884	-	hypothetical protein
2872	 70.08	+1	3106835..3107800	-	321	87200898	-	Saro_2885	-	cyclic nucleotide-binding domain-containing protein
2873	 66.21	0	3107867..3108307	-	146	87200899	-	Saro_2886	-	hypothetical protein
2874	 65.64	0	3108322..3109002	-	226	87200900	-	Saro_2887	-	glutathione S-transferase-like
2875	 65.06	0	3109004..3109501	-	165	87200901	-	Saro_2888	-	3-demethylubiquinone-9 3-methyltransferase
2876	 65.40	0	3109498..3110127	-	209	87200902	-	Saro_2889	-	glutathione S-transferase-like
2877	 66.51	0	3110200..3110847	-	215	87200903	-	Saro_2890	-	glutathione S-transferase-like
2878	 63.91	0	3110927..3111907	+	326	87200904	-	Saro_2891	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2879	 66.67	0	3111968..3113083	-	371	87200905	-	Saro_2892	-	putative NADH oxidoreductase
2880	 66.54	0	3113088..3113852	-	254	87200906	truA	Saro_2893	-	tRNA pseudouridine synthase A
2881	 69.87	+1	3113845..3114750	-	301	87200907	-	Saro_2894	-	methionyl-tRNA formyltransferase
2882	 68.17	0	3114802..3115398	+	198	87200908	-	Saro_2895	-	recombination protein RecR
2883	 64.02	0	3115464..3116030	+	188	87200909	-	Saro_2896	-	peptide deformylase
2884	 65.15	0	3116607..3118121	+	504	87200910	-	Saro_2898	-	hypothetical protein
2885	 69.62	+1	3118118..3118897	+	259	87200911	-	Saro_2899	-	hypothetical protein
2886	 68.41	0	3118903..3119304	-	133	87200912	-	Saro_2900	-	protein of unknown function DUF306, Meta and HslJ
2887	 66.29	0	3119359..3120162	-	267	87200913	-	Saro_2901	-	tRNA/rRNA methyltransferase
2888	 66.02	0	3120214..3120522	-	102	87200914	-	Saro_2902	-	HPrNtr
2889	 60.49	-1	3120524..3120928	-	134	87200915	-	Saro_2903	-	PTS system fructose subfamily IIA component
2890	 64.60	0	3121064..3121981	-	305	87200916	-	Saro_2904	-	hypothetical protein
2891	 68.08	0	3122043..3122468	-	141	87200917	-	Saro_2905	-	HPr kinase
2892	 68.82	+1	3122465..3124042	-	525	87200918	-	Saro_2906	-	periplasmic sensor signal transduction histidine kinase
2893	 65.60	0	3124029..3124781	-	250	87200919	-	Saro_2907	-	two component transcriptional regulator
2894	 65.67	0	3125015..3126619	+	534	87200920	-	Saro_2908	-	phosphoenolpyruvate carboxykinase
2895	 66.31	0	3126810..3129053	+	747	87200921	-	Saro_2909	-	catalase/peroxidase HPI
2896	 68.36	0	3129100..3129690	-	196	87200922	-	Saro_2910	-	heat shock protein DnaJ-like
2897	 67.03	0	3129731..3130003	+	90	87200923	-	Saro_2911	-	transcriptional regulator BolA
2898	 65.56	0	3130142..3130591	+	149	87200924	-	Saro_2912	-	NUDIX hydrolase
2899	 67.12	0	3130588..3131478	+	296	87200925	-	Saro_2913	-	Pirin-like
2900	 61.37	-1	3131492..3133135	-	547	87200926	-	Saro_2914	-	glycoside hydrolase family protein
2901	 65.58	0	3133388..3134218	-	276	87200927	-	Saro_2915	-	hypothetical protein
2902	 66.54	0	3134479..3135297	+	272	87200928	-	Saro_2916	-	short-chain dehydrogenase/reductase SDR
2903	 67.12	0	3135294..3136181	+	295	87200929	-	Saro_2917	-	alpha/beta hydrolase
2904	 70.24	+1	3136178..3137239	-	353	87200930	-	Saro_2918	-	hypothetical protein
2905	 68.30	0	3137282..3137953	+	223	87200931	hisG	Saro_2919	-	ATP phosphoribosyltransferase catalytic subunit
2906	 68.91	+1	3137953..3139242	+	429	87200932	-	Saro_2920	-	histidinol dehydrogenase
2907	 68.01	0	3139239..3139685	+	148	87200933	-	Saro_2921	-	NusB antitermination factor
2908	 67.72	0	3139911..3140768	-	285	87200934	-	Saro_2922	-	carboxylesterase
2909	 67.20	0	3140768..3141139	-	123	87200935	-	Saro_2923	-	glyoxalase/bleomycin resistance protein/dioxygenase
2910	 70.06	+1	3141239..3142093	-	284	87200936	-	Saro_2924	-	copper resistance D
2911	 68.78	+1	3142113..3142490	-	125	87200937	-	Saro_2925	-	copper resistance protein CopC
2912	 73.26	+2	3142610..3142897	+	95	87200938	-	Saro_2926	-	hypothetical protein
2913	 65.07	0	3142897..3143334	+	145	87200939	-	Saro_2927	-	hypothetical protein
2914	 66.13	0	3143341..3143904	+	187	87200940	-	Saro_2928	-	sigma-24 (FecI-like)
2915	 67.11	0	3143931..3145715	+	594	87200941	-	Saro_2929	-	copper-resistance protein CopA
2916	 67.91	0	3145712..3146755	+	347	87200942	-	Saro_2930	-	copper resistance B precursor
2917	 65.24	0	3146835..3147533	+	232	87200943	-	Saro_2931	-	hypothetical protein
2918	 68.49	0	3147585..3148733	-	382	87200944	-	Saro_2932	-	peptidase M20D, amidohydrolase
2919	 60.04	-1	3148778..3149275	-	165	87200945	-	Saro_2933	-	AsnC family transcriptional regulator
2920	 67.45	0	3149299..3150699	-	466	87200946	-	Saro_2934	-	hypothetical protein
2921	 65.00	0	3150843..3151922	-	359	87200947	-	Saro_2935	-	tartrate dehydrogenase
2922	 67.42	0	3151939..3153396	-	485	87200948	-	Saro_2936	-	succinate semialdehyde dehydrogenase
2923	 66.90	0	3153396..3154253	-	285	87200949	-	Saro_2937	-	GCN5-related N-acetyltransferase
2924	 68.50	0	3154454..3155926	+	490	87200950	-	Saro_2938	-	aldehyde dehydrogenase
2925	 67.37	0	3155971..3157107	-	378	87200951	-	Saro_2939	-	FAD dependent oxidoreductase
2926	 70.87	+1	3157104..3158483	-	459	87200952	-	Saro_2940	-	BFD-like (2Fe-2S)-binding protein
2927	 71.84	+2	3158480..3158788	-	102	87200953	-	Saro_2941	-	hypothetical protein
2928	 67.18	0	3158785..3160533	-	582	87200954	-	Saro_2942	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.