IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2745	 62.31	0	2979464..2979853	-	129	87200771	-	Saro_2758	-	IS4 family transposase
2746	 62.93	0	2979874..2980221	-	115	87200772	-	Saro_2759	-	IS5 family transposase
2747	 57.58	-2	2980247..2980576	-	109	87200773	-	Saro_2760	-	hypothetical protein
2748	 56.67	-2	2980950..2981309	-	119	87200774	-	Saro_2761	-	hypothetical protein
2749	 64.73	0	2981469..2982089	+	206	87200775	-	Saro_2762	-	glutathione S-transferase-like
2750	 65.19	0	2982157..2984184	+	675	87200776	-	Saro_2763	-	oxidoreductase FAD/NAD(P)-binding
2751	 64.52	0	2984217..2984681	+	154	87200777	-	Saro_2764	-	hypothetical protein
2752	 64.25	0	2984834..2985742	+	302	87200778	-	Saro_2765	-	LysR family transcriptional regulator
2753	 61.90	-1	2985817..2986299	-	160	87200779	-	Saro_2766	-	hypothetical protein
2754	 61.99	-1	2986394..2987377	-	327	87200780	-	Saro_2767	-	short-chain dehydrogenase/reductase SDR
2755	 64.44	0	2987418..2988449	-	343	87200781	-	Saro_2768	-	alcohol dehydrogenase
2756	 62.47	0	2988513..2989418	+	301	87200782	-	Saro_2769	-	LysR family transcriptional regulator
2757	 67.57	0	2989657..2990319	+	220	87200783	-	Saro_2770	-	extensin-like
2758	 67.47	0	2990334..2990954	-	206	87200784	-	Saro_2771	-	two component LuxR family transcriptional regulator
2759	 61.18	-1	2991231..2991995	-	254	87200785	-	Saro_2772	-	20S proteasome, A and B subunits
2760	 66.17	0	2992078..2992890	-	270	87200786	-	Saro_2773	-	transglutaminase-like
2761	 63.08	0	2992899..2993846	-	315	87200787	-	Saro_2774	-	hypothetical protein
2762	 63.81	0	2993846..2995279	-	477	87200788	-	Saro_2775	-	hypothetical protein
2763	 67.34	0	2995464..2997527	+	687	87200789	-	Saro_2776	-	molydopterin dinucleotide-binding region
2764	 62.38	0	2997589..2998008	+	139	87200790	-	Saro_2777	-	hypothetical protein
2765	 69.88	+1	2998012..2998821	-	269	87200791	-	Saro_2778	-	hypothetical protein
2766	 62.84	0	2998916..2999464	-	182	87200792	-	Saro_2779	-	hypothetical protein
2767	 65.24	0	2999521..3001764	+	747	87200793	-	Saro_2780	-	excinuclease ABC subunit B
2768	 69.89	+1	3001869..3002333	+	154	87200794	-	Saro_2781	-	hypothetical protein
2769	 68.56	+1	3002334..3002915	-	193	87200795	-	Saro_2782	-	hypothetical protein
2770	 65.93	0	3002951..3004435	-	494	87200796	-	Saro_2783	-	polysaccharide biosynthesis protein
2771	 68.98	+1	3004428..3005423	-	331	87200797	-	Saro_2784	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
2772	 68.00	0	3005420..3006472	-	350	87200798	-	Saro_2785	-	O-sialoglycoprotein endopeptidase
2773	 70.07	+1	3006518..3007456	+	312	87200799	-	Saro_2786	-	porphobilinogen deaminase
2774	 68.14	0	3007453..3008133	+	226	87200800	-	Saro_2787	-	uroporphyrinogen-III synthase
2775	 71.16	+1	3008163..3009053	+	296	87200801	-	Saro_2788	-	hypothetical protein
2776	 66.67	0	3009076..3010296	-	406	87200802	-	Saro_2789	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2777	 67.14	0	3010293..3011990	-	565	87200803	-	Saro_2790	-	type I phosphodiesterase/nucleotide pyrophosphatase
2778	 70.06	+1	3012112..3014172	+	686	87200804	-	Saro_2791	-	cytochrome c biogenesis protein, transmembrane region
2779	 67.70	0	3014182..3014955	-	257	87200805	-	Saro_2792	-	short-chain dehydrogenase/reductase SDR
2780	 65.35	0	3015091..3017376	-	761	87200806	-	Saro_2793	-	DNA topoisomerase IV subunit A
2781	 62.40	0	3017505..3018956	-	483	87200807	-	Saro_2794	-	hypothetical protein
2782	 67.88	0	3019067..3020224	-	385	87200808	-	Saro_2795	-	iron-containing alcohol dehydrogenase
2783	 66.37	0	3020291..3020623	-	110	87200809	-	Saro_2796	-	ferredoxin
2784	 69.71	+1	3020625..3021707	-	360	87200810	-	Saro_2797	-	aminotransferase, class V
2785	 67.81	0	3021704..3022750	-	348	87200811	-	Saro_2798	-	aminotransferase, class V
2786	 66.06	0	3022879..3023535	+	218	87200812	-	Saro_2799	-	hydrolase
2787	 66.07	0	3023603..3024439	-	278	87200813	-	Saro_2800	-	short-chain dehydrogenase/reductase SDR
2788	 66.05	0	3024456..3025925	-	489	87200814	-	Saro_2801	-	aldehyde dehydrogenase
2789	 62.94	0	3025940..3026341	-	133	87200815	-	Saro_2802	-	hypothetical protein
2790	 63.86	0	3026531..3028921	-	796	87200816	-	Saro_2803	-	TonB-dependent receptor
2791	 69.57	+1	3029036..3029587	+	183	87200817	-	Saro_2804	-	MarR family transcriptional regulator
2792	 63.66	0	3029605..3030336	-	243	87200818	-	Saro_2805	-	hypothetical protein
2793	 68.17	0	3030486..3031349	+	287	87200819	-	Saro_2806	-	dienelactone hydrolase
2794	 59.38	-1	3031475..3031831	-	118	87200820	-	Saro_2807	-	excinuclease ABC subunit C
2795	 67.86	0	3032114..3033031	-	305	87200821	-	Saro_2808	-	NmrA-like
2796	 65.93	0	3033028..3034521	-	497	87200822	-	Saro_2809	-	carotenoid oxygenase
2797	 68.06	0	3034579..3035367	-	262	87200823	-	Saro_2810	-	hypothetical protein
2798	 64.13	0	3035500..3036444	-	314	87200824	-	Saro_2811	-	oxidoreductase-like
2799	 63.35	0	3036468..3037310	-	280	87200825	-	Saro_2812	-	protocatechuate 4,5-dioxygenase subunit beta
2800	 61.42	-1	3037312..3037749	-	145	87200826	-	Saro_2813	-	protocatechuate 4,5-dioxygenase subunit alpha
2801	 64.23	0	3037746..3038771	-	341	87200827	-	Saro_2814	-	amidohydrolase 2
2802	 67.99	0	3038768..3039601	-	277	87200828	-	Saro_2815	-	6-phosphogluconate dehydrogenase, NAD-binding
2803	 71.88	+2	3039664..3040815	-	383	87200829	-	Saro_2816	-	LysR family transcriptional regulator
2804	 66.53	0	3040856..3041596	+	246	87200830	-	Saro_2817	-	hypothetical protein
2805	 66.86	0	3041744..3042802	+	352	87200831	-	Saro_2818	-	methylitaconate delta2-delta3-isomerase
2806	 67.12	0	3042799..3043689	+	296	87200832	-	Saro_2819	-	amidohydrolase 2
2807	 68.05	0	3043698..3044132	+	144	87200833	-	Saro_2820	-	hypothetical protein
2808	 68.70	+1	3044321..3046384	+	687	87200834	-	Saro_2821	-	methyl-accepting chemotaxis sensory transducer
2809	 67.83	0	3046435..3046779	+	114	87200835	-	Saro_2822	-	TonB-like
2810	 67.38	0	3046851..3048119	-	422	87200836	-	Saro_2823	-	amidohydrolase
2811	 66.90	0	3048765..3051344	-	859	87200837	-	Saro_2824	-	AAA ATPase, central region
2812	 67.65	0	3051535..3053154	-	539	87200838	-	Saro_2825	-	peptidase M28
2813	 68.14	0	3053366..3056224	+	952	87200839	-	Saro_2826	-	peptidase M16-like
2814	 63.97	0	3056332..3056628	+	98	87200840	-	Saro_2827	-	hypothetical protein
2815	 56.30	-2	3056672..3057211	-	179	87200841	-	Saro_2828	-	hypothetical protein
2816	 53.52	-2	3057306..3057845	-	179	87200842	-	Saro_2829	-	hypothetical protein
2817	 55.63	-2	3057855..3058298	-	147	87200843	-	Saro_2830	-	hypothetical protein
2818	 65.33	0	3058378..3059871	-	497	87200844	gatB	Saro_2831	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2819	 68.69	+1	3059873..3061357	-	494	87200845	gatA	Saro_2832	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
2820	 67.00	0	3061357..3061659	-	100	87200846	-	Saro_2833	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
2821	 65.96	0	3061771..3062334	-	187	87200847	-	Saro_2834	-	peptidylprolyl isomerase, FKBP-type
2822	 60.39	-1	3062508..3062714	-	68	87200848	rpsU	Saro_2835	-	30S ribosomal protein S21
2823	 67.67	0	3062901..3063299	+	132	87200849	-	Saro_2836	-	camphor resistance protein CrcB
2824	 70.94	+1	3063296..3064606	+	436	87200850	-	Saro_2837	-	ribosomal large subunit pseudouridine synthase C
2825	 68.49	0	3064606..3065208	+	200	87200851	-	Saro_2838	-	negative transcriptional regulator
2826	 67.73	0	3065219..3065875	+	218	87200852	-	Saro_2839	-	HAD family hydrolase
2827	 68.91	+1	3065872..3066138	+	88	87200853	-	Saro_2840	-	hypothetical protein
2828	 67.82	0	3066140..3066832	+	230	87200854	-	Saro_2841	-	ATP12 ATPase
2829	 68.41	0	3066845..3067417	-	190	87200855	-	Saro_2842	-	hypothetical protein
2830	 65.52	0	3067432..3068391	-	319	87200856	-	Saro_2843	-	hypothetical protein
2831	 67.11	0	3068402..3069304	-	300	87200857	-	Saro_2844	-	ABC transporter related
2832	 65.59	0	3069304..3070422	-	372	87200858	-	Saro_2845	-	hypothetical protein
2833	 65.23	0	3070572..3073286	+	904	87200859	-	Saro_2846	-	valyl-tRNA synthetase
2834	 68.01	0	3073305..3074048	+	247	87200860	-	Saro_2847	-	radical SAM family protein
2835	 67.57	0	3074150..3074701	-	183	87200861	-	Saro_2848	-	single-strand binding protein
2836	 67.69	0	3074799..3076655	-	618	87200862	-	Saro_2849	-	ferrous iron transport protein B
2837	 70.16	+1	3076652..3076909	-	85	87200863	-	Saro_2850	-	hypothetical protein
2838	 68.04	0	3076998..3077651	-	217	87200864	-	Saro_2851	-	RpsU-divergently transcribed
2839	 67.15	0	3077665..3078282	-	205	87200865	-	Saro_2852	-	ankyrin
2840	 66.83	0	3078375..3078989	+	204	87200866	-	Saro_2853	-	electron transport protein SCO1/SenC
2841	 68.14	0	3078997..3079470	+	157	87200867	-	Saro_2854	-	hypothetical protein
2842	 72.07	+2	3079463..3080221	+	252	87200868	-	Saro_2855	-	hypothetical protein
2843	 66.06	0	3080262..3080753	+	163	87200869	-	Saro_2856	-	hypothetical protein
2844	 72.12	+2	3080750..3081721	+	323	87200870	-	Saro_2857	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.