IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2695	 59.83	-1	2942874..2943107	+	77	87200721	-	Saro_2708	-	hypothetical protein
2696	 70.67	+1	2943602..2943826	+	74	87200722	-	Saro_2709	-	hypothetical protein
2697	 63.72	0	2943823..2944263	+	146	87200723	-	Saro_2710	-	hypothetical protein
2698	 65.32	0	2944445..2945338	+	297	87200724	-	Saro_2711	-	hypothetical protein
2699	 64.37	0	2945335..2946594	+	419	87200725	-	Saro_2712	-	hypothetical protein
2700	 67.08	0	2946869..2947111	+	80	87200726	-	Saro_2713	-	hypothetical protein
2701	 65.43	0	2947108..2947431	+	107	87200727	-	Saro_2714	-	hypothetical protein
2702	 61.20	-1	2947428..2947976	+	182	87200728	-	Saro_2715	-	terminase small subunit
2703	 64.63	0	2947963..2949339	+	458	87200729	-	Saro_2716	-	Phage uncharacterized protein-like
2704	 46.52	-2	2949340..2949612	-	90	87200730	-	Saro_2717	-	hypothetical protein
2705	 65.25	0	2949732..2951636	+	634	87200731	-	Saro_2718	-	hypothetical protein
2706	 58.92	-1	2951638..2952102	+	154	87200732	-	Saro_2719	-	hypothetical protein
2707	 65.57	0	2952102..2952923	+	273	87200733	-	Saro_2720	-	phage Mu protein gp30-like
2708	 52.53	-2	2952920..2953414	-	164	87200734	-	Saro_2721	-	hypothetical protein
2709	 66.29	0	2953470..2954543	+	357	87200735	-	Saro_2722	-	hypothetical protein
2710	 67.52	0	2954556..2955023	+	155	87200736	-	Saro_2723	-	hypothetical protein
2711	 63.19	0	2955037..2956128	+	363	87200737	-	Saro_2724	-	hypothetical protein
2712	 62.42	0	2956140..2956304	+	54	87200738	-	Saro_2725	-	hypothetical protein
2713	 69.33	+1	2956413..2956787	+	124	87200739	-	Saro_2726	-	hypothetical protein
2714	 64.55	0	2956781..2957158	+	125	87200740	-	Saro_2727	-	hypothetical protein
2715	 65.21	0	2957158..2957568	+	136	87200741	-	Saro_2728	-	Phage protein, HK97, gp10
2716	 65.51	0	2957689..2958120	+	143	87200742	-	Saro_2729	-	hypothetical protein
2717	 61.04	-1	2958141..2958371	+	76	87200743	-	Saro_2730	-	hypothetical protein
2718	 53.29	-2	2958379..2958879	-	166	87200744	-	Saro_2731	-	XRE family transcriptional regulator
2719	 54.65	-2	2958876..2959208	-	110	87200745	-	Saro_2732	-	hypothetical protein
2720	 63.11	0	2959365..2959814	+	149	87200746	-	Saro_2733	-	hypothetical protein
2721	 61.73	-1	2959818..2960222	+	134	87200747	-	Saro_2734	-	hypothetical protein
2722	 61.42	-1	2960429..2960695	+	88	87200748	-	Saro_2735	-	hypothetical protein
2723	 65.26	0	2960755..2963025	+	756	87200749	-	Saro_2736	-	hypothetical protein
2724	 62.88	0	2963025..2963579	+	184	87200750	-	Saro_2737	-	hypothetical protein
2725	 66.15	0	2963579..2963962	+	127	87200751	-	Saro_2738	-	hypothetical protein
2726	 64.08	0	2963955..2965928	+	657	87200752	-	Saro_2739	-	hypothetical protein
2727	 67.54	0	2965925..2967073	+	382	87200753	-	Saro_2740	-	PE-PGRS family protein
2728	 64.05	0	2967125..2967811	+	228	87200754	-	Saro_2741	-	hypothetical protein
2729	 58.97	-1	2967808..2968197	+	129	87200755	-	Saro_2742	-	hypothetical protein
2730	 60.47	-1	2968197..2968664	+	155	87200756	-	Saro_2743	-	hypothetical protein
2731	 62.75	0	2968661..2970802	+	713	87200757	-	Saro_2744	-	hypothetical protein
2732	 58.41	-2	2970802..2971140	+	112	87200758	-	Saro_2745	-	hypothetical protein
2733	 65.48	0	2971137..2971727	+	196	87200759	-	Saro_2746	-	glycoside hydrolase family protein
2734	 63.30	0	2971828..2972094	+	88	87200760	-	Saro_2747	-	hypothetical protein
2735	 66.00	0	2972091..2972390	+	99	87200761	-	Saro_2748	-	hypothetical protein
2736	 60.73	-1	2972601..2972819	-	72	87200762	-	Saro_2749	-	hypothetical protein
2737	 61.49	-1	2973398..2974189	-	263	87200763	-	Saro_2750	-	methyltransferase FkbM
2738	 57.33	-2	2974291..2974515	-	74	87200764	-	Saro_2751	-	hypothetical protein
2739	 61.85	-1	2974626..2975435	-	269	87200765	-	Saro_2752	-	hypothetical protein
2740	 54.81	-2	2976145..2976456	-	103	87200766	-	Saro_2753	-	hypothetical protein
2741	 55.91	-2	2976637..2976915	-	92	87200767	-	Saro_2754	-	hypothetical protein
2742	 57.66	-2	2977208..2977540	-	110	87200768	-	Saro_2755	-	hypothetical protein
2743	 66.19	0	2977809..2978849	-	346	87200769	-	Saro_2756	-	hypothetical protein
2744	 58.53	-2	2979133..2979390	-	85	87200770	-	Saro_2757	-	hypothetical protein
2745	 62.31	0	2979464..2979853	-	129	87200771	-	Saro_2758	-	IS4 family transposase
2746	 62.93	0	2979874..2980221	-	115	87200772	-	Saro_2759	-	IS5 family transposase
2747	 57.58	-2	2980247..2980576	-	109	87200773	-	Saro_2760	-	hypothetical protein
2748	 56.67	-2	2980950..2981309	-	119	87200774	-	Saro_2761	-	hypothetical protein
2749	 64.73	0	2981469..2982089	+	206	87200775	-	Saro_2762	-	glutathione S-transferase-like
2750	 65.19	0	2982157..2984184	+	675	87200776	-	Saro_2763	-	oxidoreductase FAD/NAD(P)-binding
2751	 64.52	0	2984217..2984681	+	154	87200777	-	Saro_2764	-	hypothetical protein
2752	 64.25	0	2984834..2985742	+	302	87200778	-	Saro_2765	-	LysR family transcriptional regulator
2753	 61.90	-1	2985817..2986299	-	160	87200779	-	Saro_2766	-	hypothetical protein
2754	 61.99	-1	2986394..2987377	-	327	87200780	-	Saro_2767	-	short-chain dehydrogenase/reductase SDR
2755	 64.44	0	2987418..2988449	-	343	87200781	-	Saro_2768	-	alcohol dehydrogenase
2756	 62.47	0	2988513..2989418	+	301	87200782	-	Saro_2769	-	LysR family transcriptional regulator
2757	 67.57	0	2989657..2990319	+	220	87200783	-	Saro_2770	-	extensin-like
2758	 67.47	0	2990334..2990954	-	206	87200784	-	Saro_2771	-	two component LuxR family transcriptional regulator
2759	 61.18	-1	2991231..2991995	-	254	87200785	-	Saro_2772	-	20S proteasome, A and B subunits
2760	 66.17	0	2992078..2992890	-	270	87200786	-	Saro_2773	-	transglutaminase-like
2761	 63.08	0	2992899..2993846	-	315	87200787	-	Saro_2774	-	hypothetical protein
2762	 63.81	0	2993846..2995279	-	477	87200788	-	Saro_2775	-	hypothetical protein
2763	 67.34	0	2995464..2997527	+	687	87200789	-	Saro_2776	-	molydopterin dinucleotide-binding region
2764	 62.38	0	2997589..2998008	+	139	87200790	-	Saro_2777	-	hypothetical protein
2765	 69.88	+1	2998012..2998821	-	269	87200791	-	Saro_2778	-	hypothetical protein
2766	 62.84	0	2998916..2999464	-	182	87200792	-	Saro_2779	-	hypothetical protein
2767	 65.24	0	2999521..3001764	+	747	87200793	-	Saro_2780	-	excinuclease ABC subunit B
2768	 69.89	+1	3001869..3002333	+	154	87200794	-	Saro_2781	-	hypothetical protein
2769	 68.56	+1	3002334..3002915	-	193	87200795	-	Saro_2782	-	hypothetical protein
2770	 65.93	0	3002951..3004435	-	494	87200796	-	Saro_2783	-	polysaccharide biosynthesis protein
2771	 68.98	+1	3004428..3005423	-	331	87200797	-	Saro_2784	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
2772	 68.00	0	3005420..3006472	-	350	87200798	-	Saro_2785	-	O-sialoglycoprotein endopeptidase
2773	 70.07	+1	3006518..3007456	+	312	87200799	-	Saro_2786	-	porphobilinogen deaminase
2774	 68.14	0	3007453..3008133	+	226	87200800	-	Saro_2787	-	uroporphyrinogen-III synthase
2775	 71.16	+1	3008163..3009053	+	296	87200801	-	Saro_2788	-	hypothetical protein
2776	 66.67	0	3009076..3010296	-	406	87200802	-	Saro_2789	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2777	 67.14	0	3010293..3011990	-	565	87200803	-	Saro_2790	-	type I phosphodiesterase/nucleotide pyrophosphatase
2778	 70.06	+1	3012112..3014172	+	686	87200804	-	Saro_2791	-	cytochrome c biogenesis protein, transmembrane region
2779	 67.70	0	3014182..3014955	-	257	87200805	-	Saro_2792	-	short-chain dehydrogenase/reductase SDR
2780	 65.35	0	3015091..3017376	-	761	87200806	-	Saro_2793	-	DNA topoisomerase IV subunit A
2781	 62.40	0	3017505..3018956	-	483	87200807	-	Saro_2794	-	hypothetical protein
2782	 67.88	0	3019067..3020224	-	385	87200808	-	Saro_2795	-	iron-containing alcohol dehydrogenase
2783	 66.37	0	3020291..3020623	-	110	87200809	-	Saro_2796	-	ferredoxin
2784	 69.71	+1	3020625..3021707	-	360	87200810	-	Saro_2797	-	aminotransferase, class V
2785	 67.81	0	3021704..3022750	-	348	87200811	-	Saro_2798	-	aminotransferase, class V
2786	 66.06	0	3022879..3023535	+	218	87200812	-	Saro_2799	-	hydrolase
2787	 66.07	0	3023603..3024439	-	278	87200813	-	Saro_2800	-	short-chain dehydrogenase/reductase SDR
2788	 66.05	0	3024456..3025925	-	489	87200814	-	Saro_2801	-	aldehyde dehydrogenase
2789	 62.94	0	3025940..3026341	-	133	87200815	-	Saro_2802	-	hypothetical protein
2790	 63.86	0	3026531..3028921	-	796	87200816	-	Saro_2803	-	TonB-dependent receptor
2791	 69.57	+1	3029036..3029587	+	183	87200817	-	Saro_2804	-	MarR family transcriptional regulator
2792	 63.66	0	3029605..3030336	-	243	87200818	-	Saro_2805	-	hypothetical protein
2793	 68.17	0	3030486..3031349	+	287	87200819	-	Saro_2806	-	dienelactone hydrolase
2794	 59.38	-1	3031475..3031831	-	118	87200820	-	Saro_2807	-	excinuclease ABC subunit C
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.