IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2639	 68.31	0	2887977..2889494	-	505	87200665	-	Saro_2652	-	type II secretion system protein E
2640	 66.09	0	2889499..2891745	-	748	87200666	-	Saro_2653	-	type II and III secretion system protein
2641	 68.57	+1	2891742..2892581	-	279	87200667	-	Saro_2654	-	type II secretion system protein C
2642	 65.43	0	2892766..2893251	+	161	87200668	-	Saro_2655	-	NUDIX hydrolase
2643	 66.67	0	2893230..2894366	-	378	87200669	-	Saro_2656	-	DNA polymerase IV
2644	 65.73	0	2894432..2895709	+	425	87200670	-	Saro_2657	-	Bcr/CflA subfamily drug resistance transporter
2645	 66.67	0	2895710..2897635	-	641	87200671	-	Saro_2658	-	diguanylate cyclase/phosphodiesterase
2646	 68.80	+1	2897751..2898548	-	265	87200672	-	Saro_2659	-	LysR family transcriptional regulator
2647	 62.86	0	2898561..2898980	-	139	87200673	apaG	Saro_2660	-	ApaG
2648	 70.11	+1	2899056..2899664	+	202	87200674	-	Saro_2661	-	recombinational DNA repair protein (RecF pathway)-like
2649	 66.49	0	2899661..2900770	+	369	87200675	-	Saro_2662	-	3-isopropylmalate dehydrogenase
2650	 65.95	0	2900783..2901904	+	373	87200676	-	Saro_2663	-	dolichyl-phosphate beta-D-mannosyltransferase
2651	 65.53	0	2901927..2903246	-	439	87200677	-	Saro_2664	-	glycosyl transferase family protein
2652	 66.25	0	2903330..2904538	+	402	87200678	-	Saro_2665	-	cystathionine gamma-synthase
2653	 66.37	0	2904622..2905962	+	446	87200679	-	Saro_2666	-	signal transduction histidine kinase
2654	 67.46	0	2905959..2906210	-	83	87200680	-	Saro_2667	-	hypothetical protein
2655	 63.96	0	2906274..2906828	-	184	87200681	-	Saro_2668	-	TspO and MBR like proteins
2656	 67.46	0	2906949..2907704	-	251	87200682	-	Saro_2669	-	hemolysin A
2657	 69.68	+1	2907790..2908287	+	165	87200683	-	Saro_2670	-	hypothetical protein
2658	 67.39	0	2908711..2909814	+	367	87200684	-	Saro_2671	-	branched-chain amino acid aminotransferase
2659	 65.00	0	2909887..2911326	-	479	87200685	-	Saro_2672	-	phosphate-selective porin O and P
2660	 65.24	0	2911534..2912442	+	302	87200686	-	Saro_2673	-	short-chain dehydrogenase/reductase SDR
2661	 71.25	+1	2912612..2913397	-	261	87200687	-	Saro_2674	-	siroheme synthase
2662	 66.35	0	2913402..2914661	-	419	87200688	-	Saro_2675	-	diaminopimelate decarboxylase
2663	 68.65	+1	2914673..2914924	-	83	87200689	-	Saro_2676	-	hypothetical protein
2664	 68.37	0	2914921..2916330	-	469	87200690	-	Saro_2677	-	argininosuccinate lyase
2665	 64.13	0	2916374..2916925	+	183	87200691	-	Saro_2678	-	thioredoxin family protein
2666	 65.88	0	2917053..2918192	+	379	87200692	-	Saro_2679	-	phosphoserine aminotransferase
2667	 65.13	0	2918345..2919967	+	540	87200693	-	Saro_2680	-	D-3-phosphoglycerate dehydrogenase
2668	 69.62	+1	2920156..2921307	+	383	87200694	-	Saro_2681	-	tRNA synthetase, class II (G, H, P and S)
2669	 68.51	+1	2921348..2922322	-	324	87200695	-	Saro_2682	-	esterase/lipase/thioesterase
2670	 67.60	0	2922561..2923850	+	429	87200696	-	Saro_2683	-	adenylosuccinate synthetase
2671	 64.29	0	2923921..2924424	+	167	87200697	-	Saro_2684	-	ErfK/YbiS/YcfS/YnhG
2672	 67.48	0	2924512..2925492	+	326	87200698	-	Saro_2685	-	hypothetical protein
2673	 64.61	0	2925551..2926183	-	210	87200699	-	Saro_2686	-	hypothetical protein
2674	 67.22	0	2926498..2927220	+	240	87200700	-	Saro_2687	-	protein of unknown function DUF861, cupin_3
2675	 65.41	0	2927202..2927837	-	211	87200701	-	Saro_2688	-	electron transport protein SCO1/SenC
2676	 67.52	0	2927888..2929408	-	506	87200702	-	Saro_2689	-	hypothetical protein
2677	 66.20	0	2929417..2930913	-	498	87200703	-	Saro_2690	-	hypothetical protein
2678	 66.21	0	2931041..2932786	+	581	87200704	-	Saro_2691	-	sodium/hydrogen exchanger
2679	 62.96	0	2932972..2934186	-	404	87200705	-	Saro_2692	-	phage integrase
2680	 60.80	-1	2934361..2934786	-	141	87200706	-	Saro_2693	-	hypothetical protein
2681	 67.42	0	2934783..2935445	-	220	87200707	-	Saro_2694	-	hypothetical protein
2682	 69.62	+1	2935442..2935678	-	78	87200708	-	Saro_2695	-	hypothetical protein
2683	 57.08	-2	2935791..2936009	-	72	87200709	-	Saro_2696	-	hypothetical protein
2684	 61.60	-1	2936062..2936298	-	78	87200710	-	Saro_2697	-	hypothetical protein
2685	 64.62	0	2936298..2936492	-	64	87200711	-	Saro_2698	-	hypothetical protein
2686	 64.63	0	2936495..2937379	-	294	87200712	-	Saro_2699	-	rect protein
2687	 61.84	-1	2937379..2938290	-	303	87200713	-	Saro_2700	-	Phage-related protein endonuclease-like
2688	 68.93	+1	2938511..2938951	+	146	87200714	-	Saro_2701	-	hypothetical protein
2689	 63.48	0	2938885..2939229	-	114	87200715	-	Saro_2702	-	hypothetical protein
2690	 60.74	-1	2939733..2940137	-	134	87200716	-	Saro_2703	-	hypothetical protein
2691	 60.00	-1	2940137..2940946	-	269	87200717	-	Saro_2704	-	putative phage repressor
2692	 66.06	0	2941416..2941907	+	163	87200718	-	Saro_2705	-	hypothetical protein
2693	 65.19	0	2941904..2942581	+	225	87200719	-	Saro_2706	-	hypothetical protein
2694	 70.07	+1	2942581..2942874	+	97	87200720	-	Saro_2707	-	hypothetical protein
2695	 59.83	-1	2942874..2943107	+	77	87200721	-	Saro_2708	-	hypothetical protein
2696	 70.67	+1	2943602..2943826	+	74	87200722	-	Saro_2709	-	hypothetical protein
2697	 63.72	0	2943823..2944263	+	146	87200723	-	Saro_2710	-	hypothetical protein
2698	 65.32	0	2944445..2945338	+	297	87200724	-	Saro_2711	-	hypothetical protein
2699	 64.37	0	2945335..2946594	+	419	87200725	-	Saro_2712	-	hypothetical protein
2700	 67.08	0	2946869..2947111	+	80	87200726	-	Saro_2713	-	hypothetical protein
2701	 65.43	0	2947108..2947431	+	107	87200727	-	Saro_2714	-	hypothetical protein
2702	 61.20	-1	2947428..2947976	+	182	87200728	-	Saro_2715	-	terminase small subunit
2703	 64.63	0	2947963..2949339	+	458	87200729	-	Saro_2716	-	Phage uncharacterized protein-like
2704	 46.52	-2	2949340..2949612	-	90	87200730	-	Saro_2717	-	hypothetical protein
2705	 65.25	0	2949732..2951636	+	634	87200731	-	Saro_2718	-	hypothetical protein
2706	 58.92	-1	2951638..2952102	+	154	87200732	-	Saro_2719	-	hypothetical protein
2707	 65.57	0	2952102..2952923	+	273	87200733	-	Saro_2720	-	phage Mu protein gp30-like
2708	 52.53	-2	2952920..2953414	-	164	87200734	-	Saro_2721	-	hypothetical protein
2709	 66.29	0	2953470..2954543	+	357	87200735	-	Saro_2722	-	hypothetical protein
2710	 67.52	0	2954556..2955023	+	155	87200736	-	Saro_2723	-	hypothetical protein
2711	 63.19	0	2955037..2956128	+	363	87200737	-	Saro_2724	-	hypothetical protein
2712	 62.42	0	2956140..2956304	+	54	87200738	-	Saro_2725	-	hypothetical protein
2713	 69.33	+1	2956413..2956787	+	124	87200739	-	Saro_2726	-	hypothetical protein
2714	 64.55	0	2956781..2957158	+	125	87200740	-	Saro_2727	-	hypothetical protein
2715	 65.21	0	2957158..2957568	+	136	87200741	-	Saro_2728	-	Phage protein, HK97, gp10
2716	 65.51	0	2957689..2958120	+	143	87200742	-	Saro_2729	-	hypothetical protein
2717	 61.04	-1	2958141..2958371	+	76	87200743	-	Saro_2730	-	hypothetical protein
2718	 53.29	-2	2958379..2958879	-	166	87200744	-	Saro_2731	-	XRE family transcriptional regulator
2719	 54.65	-2	2958876..2959208	-	110	87200745	-	Saro_2732	-	hypothetical protein
2720	 63.11	0	2959365..2959814	+	149	87200746	-	Saro_2733	-	hypothetical protein
2721	 61.73	-1	2959818..2960222	+	134	87200747	-	Saro_2734	-	hypothetical protein
2722	 61.42	-1	2960429..2960695	+	88	87200748	-	Saro_2735	-	hypothetical protein
2723	 65.26	0	2960755..2963025	+	756	87200749	-	Saro_2736	-	hypothetical protein
2724	 62.88	0	2963025..2963579	+	184	87200750	-	Saro_2737	-	hypothetical protein
2725	 66.15	0	2963579..2963962	+	127	87200751	-	Saro_2738	-	hypothetical protein
2726	 64.08	0	2963955..2965928	+	657	87200752	-	Saro_2739	-	hypothetical protein
2727	 67.54	0	2965925..2967073	+	382	87200753	-	Saro_2740	-	PE-PGRS family protein
2728	 64.05	0	2967125..2967811	+	228	87200754	-	Saro_2741	-	hypothetical protein
2729	 58.97	-1	2967808..2968197	+	129	87200755	-	Saro_2742	-	hypothetical protein
2730	 60.47	-1	2968197..2968664	+	155	87200756	-	Saro_2743	-	hypothetical protein
2731	 62.75	0	2968661..2970802	+	713	87200757	-	Saro_2744	-	hypothetical protein
2732	 58.41	-2	2970802..2971140	+	112	87200758	-	Saro_2745	-	hypothetical protein
2733	 65.48	0	2971137..2971727	+	196	87200759	-	Saro_2746	-	glycoside hydrolase family protein
2734	 63.30	0	2971828..2972094	+	88	87200760	-	Saro_2747	-	hypothetical protein
2735	 66.00	0	2972091..2972390	+	99	87200761	-	Saro_2748	-	hypothetical protein
2736	 60.73	-1	2972601..2972819	-	72	87200762	-	Saro_2749	-	hypothetical protein
2737	 61.49	-1	2973398..2974189	-	263	87200763	-	Saro_2750	-	methyltransferase FkbM
2738	 57.33	-2	2974291..2974515	-	74	87200764	-	Saro_2751	-	hypothetical protein
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.