IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2604	 65.80	0	2831273..2831965	-	230	87200630	-	Saro_2617	-	carbonate dehydratase
2605	 66.97	0	2832091..2833401	-	436	87200631	-	Saro_2618	-	periplasmic sensor signal transduction histidine kinase
2606	 66.80	0	2833398..2834120	-	240	87200632	-	Saro_2619	-	two component transcriptional regulator
2607	 69.76	+1	2834191..2835159	-	322	87200633	-	Saro_2620	-	hypothetical protein
2608	 61.90	-1	2835202..2835537	-	111	87200634	-	Saro_2621	-	hypothetical protein
2609	 66.56	0	2835569..2837497	-	642	87200635	-	Saro_2622	-	AMP-dependent synthetase and ligase
2610	 63.18	0	2837522..2839213	-	563	87200636	-	Saro_2623	-	general substrate transporter
2611	 66.53	0	2839239..2840651	-	470	87200637	-	Saro_2624	-	hypothetical protein
2612	 64.77	0	2840827..2842776	+	649	87200638	-	Saro_2625	-	acetyl-coenzyme A synthetase
2613	 65.38	0	2842798..2843421	+	207	87200639	-	Saro_2626	-	two component LuxR family transcriptional regulator
2614	 65.50	0	2843398..2846748	-	1116	87200640	-	Saro_2627	-	multi-sensor hybrid histidine kinase
2615	 64.77	0	2864556..2865608	+	350	87200641	-	Saro_2628	-	glycosyl transferase family protein
2616	 66.01	0	2865605..2867119	+	504	87200642	-	Saro_2629	-	polysaccharide biosynthesis protein
2617	 64.10	0	2867173..2868108	+	311	87200643	-	Saro_2630	-	putative peptidase A2A
2618	 64.53	0	2868163..2869989	+	608	87200644	-	Saro_2631	-	ABC transporter related
2619	 62.69	0	2870055..2870255	-	66	87200645	-	Saro_2632	-	hypothetical protein
2620	 65.41	0	2870264..2870740	-	158	87200646	-	Saro_2633	-	GCN5-related N-acetyltransferase
2621	 64.82	0	2870737..2872038	-	433	87200647	hslU	Saro_2634	-	ATP-dependent protease ATP-binding subunit
2622	 64.52	0	2872135..2872692	-	185	87200648	-	Saro_2635	-	ATP-dependent protease peptidase subunit
2623	 65.66	0	2872738..2873232	-	164	87200649	-	Saro_2636	-	SmpA/OmlA
2624	 64.74	0	2873435..2873953	+	172	87200650	-	Saro_2637	-	hypothetical protein
2625	 63.57	0	2873950..2874465	+	171	87200651	-	Saro_2638	-	hypothetical protein
2626	 66.80	0	2874470..2875915	+	481	87200652	-	Saro_2639	-	MATE efflux family protein
2627	 61.99	-1	2875964..2877673	-	569	87200653	-	Saro_2640	-	hypothetical protein
2628	 62.55	0	2877773..2878525	-	250	87200654	-	Saro_2641	-	hypothetical protein
2629	 64.81	0	2878522..2879436	-	304	87200655	-	Saro_2642	-	hypothetical protein
2630	 68.83	+1	2879513..2880529	-	338	87200656	-	Saro_2643	-	hypothetical protein
2631	 66.46	0	2880616..2882082	-	488	87200657	-	Saro_2644	-	bacteriophage N4 adsorption protein B
2632	 68.37	0	2882210..2883382	+	390	87200658	-	Saro_2645	-	Na+/H+ antiporter NhaA
2633	 63.82	0	2883484..2883939	+	151	87200659	-	Saro_2646	-	Ferritin and Dps
2634	 66.80	0	2883943..2884677	-	244	87200660	-	Saro_2647	-	type II secretion system protein N
2635	 68.54	+1	2884674..2885153	-	159	87200661	-	Saro_2648	-	hypothetical protein
2636	 68.54	+1	2885150..2886268	-	372	87200662	-	Saro_2649	-	general secretion pathway L
2637	 63.46	0	2886278..2886745	-	155	87200663	-	Saro_2650	-	general secretion pathway protein G
2638	 66.75	0	2886748..2887977	-	409	87200664	-	Saro_2651	-	general secretion pathway protein F
2639	 68.31	0	2887977..2889494	-	505	87200665	-	Saro_2652	-	type II secretion system protein E
2640	 66.09	0	2889499..2891745	-	748	87200666	-	Saro_2653	-	type II and III secretion system protein
2641	 68.57	+1	2891742..2892581	-	279	87200667	-	Saro_2654	-	type II secretion system protein C
2642	 65.43	0	2892766..2893251	+	161	87200668	-	Saro_2655	-	NUDIX hydrolase
2643	 66.67	0	2893230..2894366	-	378	87200669	-	Saro_2656	-	DNA polymerase IV
2644	 65.73	0	2894432..2895709	+	425	87200670	-	Saro_2657	-	Bcr/CflA subfamily drug resistance transporter
2645	 66.67	0	2895710..2897635	-	641	87200671	-	Saro_2658	-	diguanylate cyclase/phosphodiesterase
2646	 68.80	+1	2897751..2898548	-	265	87200672	-	Saro_2659	-	LysR family transcriptional regulator
2647	 62.86	0	2898561..2898980	-	139	87200673	apaG	Saro_2660	-	ApaG
2648	 70.11	+1	2899056..2899664	+	202	87200674	-	Saro_2661	-	recombinational DNA repair protein (RecF pathway)-like
2649	 66.49	0	2899661..2900770	+	369	87200675	-	Saro_2662	-	3-isopropylmalate dehydrogenase
2650	 65.95	0	2900783..2901904	+	373	87200676	-	Saro_2663	-	dolichyl-phosphate beta-D-mannosyltransferase
2651	 65.53	0	2901927..2903246	-	439	87200677	-	Saro_2664	-	glycosyl transferase family protein
2652	 66.25	0	2903330..2904538	+	402	87200678	-	Saro_2665	-	cystathionine gamma-synthase
2653	 66.37	0	2904622..2905962	+	446	87200679	-	Saro_2666	-	signal transduction histidine kinase
2654	 67.46	0	2905959..2906210	-	83	87200680	-	Saro_2667	-	hypothetical protein
2655	 63.96	0	2906274..2906828	-	184	87200681	-	Saro_2668	-	TspO and MBR like proteins
2656	 67.46	0	2906949..2907704	-	251	87200682	-	Saro_2669	-	hemolysin A
2657	 69.68	+1	2907790..2908287	+	165	87200683	-	Saro_2670	-	hypothetical protein
2658	 67.39	0	2908711..2909814	+	367	87200684	-	Saro_2671	-	branched-chain amino acid aminotransferase
2659	 65.00	0	2909887..2911326	-	479	87200685	-	Saro_2672	-	phosphate-selective porin O and P
2660	 65.24	0	2911534..2912442	+	302	87200686	-	Saro_2673	-	short-chain dehydrogenase/reductase SDR
2661	 71.25	+1	2912612..2913397	-	261	87200687	-	Saro_2674	-	siroheme synthase
2662	 66.35	0	2913402..2914661	-	419	87200688	-	Saro_2675	-	diaminopimelate decarboxylase
2663	 68.65	+1	2914673..2914924	-	83	87200689	-	Saro_2676	-	hypothetical protein
2664	 68.37	0	2914921..2916330	-	469	87200690	-	Saro_2677	-	argininosuccinate lyase
2665	 64.13	0	2916374..2916925	+	183	87200691	-	Saro_2678	-	thioredoxin family protein
2666	 65.88	0	2917053..2918192	+	379	87200692	-	Saro_2679	-	phosphoserine aminotransferase
2667	 65.13	0	2918345..2919967	+	540	87200693	-	Saro_2680	-	D-3-phosphoglycerate dehydrogenase
2668	 69.62	+1	2920156..2921307	+	383	87200694	-	Saro_2681	-	tRNA synthetase, class II (G, H, P and S)
2669	 68.51	+1	2921348..2922322	-	324	87200695	-	Saro_2682	-	esterase/lipase/thioesterase
2670	 67.60	0	2922561..2923850	+	429	87200696	-	Saro_2683	-	adenylosuccinate synthetase
2671	 64.29	0	2923921..2924424	+	167	87200697	-	Saro_2684	-	ErfK/YbiS/YcfS/YnhG
2672	 67.48	0	2924512..2925492	+	326	87200698	-	Saro_2685	-	hypothetical protein
2673	 64.61	0	2925551..2926183	-	210	87200699	-	Saro_2686	-	hypothetical protein
2674	 67.22	0	2926498..2927220	+	240	87200700	-	Saro_2687	-	protein of unknown function DUF861, cupin_3
2675	 65.41	0	2927202..2927837	-	211	87200701	-	Saro_2688	-	electron transport protein SCO1/SenC
2676	 67.52	0	2927888..2929408	-	506	87200702	-	Saro_2689	-	hypothetical protein
2677	 66.20	0	2929417..2930913	-	498	87200703	-	Saro_2690	-	hypothetical protein
2678	 66.21	0	2931041..2932786	+	581	87200704	-	Saro_2691	-	sodium/hydrogen exchanger
2679	 62.96	0	2932972..2934186	-	404	87200705	-	Saro_2692	-	phage integrase
2680	 60.80	-1	2934361..2934786	-	141	87200706	-	Saro_2693	-	hypothetical protein
2681	 67.42	0	2934783..2935445	-	220	87200707	-	Saro_2694	-	hypothetical protein
2682	 69.62	+1	2935442..2935678	-	78	87200708	-	Saro_2695	-	hypothetical protein
2683	 57.08	-2	2935791..2936009	-	72	87200709	-	Saro_2696	-	hypothetical protein
2684	 61.60	-1	2936062..2936298	-	78	87200710	-	Saro_2697	-	hypothetical protein
2685	 64.62	0	2936298..2936492	-	64	87200711	-	Saro_2698	-	hypothetical protein
2686	 64.63	0	2936495..2937379	-	294	87200712	-	Saro_2699	-	rect protein
2687	 61.84	-1	2937379..2938290	-	303	87200713	-	Saro_2700	-	Phage-related protein endonuclease-like
2688	 68.93	+1	2938511..2938951	+	146	87200714	-	Saro_2701	-	hypothetical protein
2689	 63.48	0	2938885..2939229	-	114	87200715	-	Saro_2702	-	hypothetical protein
2690	 60.74	-1	2939733..2940137	-	134	87200716	-	Saro_2703	-	hypothetical protein
2691	 60.00	-1	2940137..2940946	-	269	87200717	-	Saro_2704	-	putative phage repressor
2692	 66.06	0	2941416..2941907	+	163	87200718	-	Saro_2705	-	hypothetical protein
2693	 65.19	0	2941904..2942581	+	225	87200719	-	Saro_2706	-	hypothetical protein
2694	 70.07	+1	2942581..2942874	+	97	87200720	-	Saro_2707	-	hypothetical protein
2695	 59.83	-1	2942874..2943107	+	77	87200721	-	Saro_2708	-	hypothetical protein
2696	 70.67	+1	2943602..2943826	+	74	87200722	-	Saro_2709	-	hypothetical protein
2697	 63.72	0	2943823..2944263	+	146	87200723	-	Saro_2710	-	hypothetical protein
2698	 65.32	0	2944445..2945338	+	297	87200724	-	Saro_2711	-	hypothetical protein
2699	 64.37	0	2945335..2946594	+	419	87200725	-	Saro_2712	-	hypothetical protein
2700	 67.08	0	2946869..2947111	+	80	87200726	-	Saro_2713	-	hypothetical protein
2701	 65.43	0	2947108..2947431	+	107	87200727	-	Saro_2714	-	hypothetical protein
2702	 61.20	-1	2947428..2947976	+	182	87200728	-	Saro_2715	-	terminase small subunit
2703	 64.63	0	2947963..2949339	+	458	87200729	-	Saro_2716	-	Phage uncharacterized protein-like
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.