IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2549	 64.73	0	2764917..2765588	+	223	87200575	-	Saro_2562	-	hypothetical protein
2550	 62.15	0	2765588..2766340	+	250	87200576	-	Saro_2563	-	hypothetical protein
2551	 69.92	+1	2766342..2767694	+	450	87200577	-	Saro_2564	-	TPR repeat-containing protein
2552	 69.21	+1	2767633..2768811	+	392	87200578	-	Saro_2565	-	putative transmembrane protein
2553	 66.12	0	2768850..2769950	+	366	87200579	-	Saro_2566	-	TrkA-N
2554	 67.71	0	2770011..2772794	-	927	87200580	-	Saro_2567	-	phosphoenolpyruvate carboxylase
2555	 67.15	0	2772819..2773433	-	204	87200581	-	Saro_2568	-	2-keto-3-deoxy-phosphogluconate aldolase
2556	 66.07	0	2773551..2774900	-	449	87200582	-	Saro_2569	-	coproporphyrinogen III oxidase
2557	 65.86	0	2774890..2775138	-	82	87200583	-	Saro_2570	-	hypothetical protein
2558	 62.67	0	2775135..2775284	-	49	87200584	-	Saro_2571	-	cytochrome oxidase maturation protein, cbb3-type
2559	 68.88	+1	2775281..2777404	-	707	87200585	-	Saro_2572	-	heavy metal translocating P-type ATPase
2560	 66.45	0	2777401..2777871	-	156	87200586	-	Saro_2573	-	integral membrane protein linked to a cation pump-like
2561	 64.90	0	2777868..2779337	-	489	87200587	-	Saro_2574	-	4Fe-4S ferredoxin, iron-sulfur binding
2562	 68.94	+1	2779359..2780282	-	307	87200588	-	Saro_2575	-	cytochrome c oxidase, cbb3-type, subunit III
2563	 61.99	-1	2780275..2780445	-	56	87200589	-	Saro_2576	-	Cbb3-type cytochrome oxidase component
2564	 64.40	0	2780442..2781191	-	249	87200590	-	Saro_2577	-	cytochrome c oxidase, cbb3-type, subunit II
2565	 63.75	0	2781217..2782863	-	548	87200591	-	Saro_2578	-	cytochrome c oxidase, cbb3-type, subunit I
2566	 63.32	0	2783100..2783786	+	228	87200592	-	Saro_2579	-	OmpW
2567	 65.06	0	2784084..2786504	+	806	87200593	-	Saro_2580	-	TonB-dependent receptor
2568	 65.09	0	2786581..2787276	-	231	87200594	-	Saro_2581	-	Crp/FNR family transcriptional regulator
2569	 64.42	0	2787539..2788027	-	162	87200595	-	Saro_2582	-	flavin reductase-like, FMN-binding
2570	 66.34	0	2788082..2788993	-	303	87200596	-	Saro_2583	-	hypothetical protein
2571	 71.80	+2	2789231..2791003	+	590	87200597	-	Saro_2584	-	DEAD/DEAH box helicase-like
2572	 62.02	-1	2791267..2791524	-	85	87200598	-	Saro_2585	-	translation initiation factor 1
2573	 59.42	-1	2791529..2791735	-	68	87200599	-	Saro_2586	-	cold-shock DNA-binding protein family protein
2574	 63.42	0	2791974..2793791	-	605	87200600	-	Saro_2587	-	GTP-binding protein LepA
2575	 66.74	0	2794095..2795537	+	480	87200601	-	Saro_2588	-	phosphate-selective porin O and P
2576	 67.26	0	2795589..2796605	-	338	87200602	-	Saro_2589	-	hypothetical protein
2577	 72.27	+2	2796840..2797214	+	124	87200603	-	Saro_2590	-	17 kDa surface antigen
2578	 65.31	0	2797271..2799415	-	714	87200604	-	Saro_2591	-	dipeptidyl-peptidase 7
2579	 65.65	0	2799463..2800737	+	424	87200605	-	Saro_2592	-	cyclopropane-fatty-acyl-phospholipid synthase
2580	 68.71	+1	2800825..2802342	+	505	87200606	-	Saro_2593	-	propionyl-CoA carboxylase
2581	 68.19	0	2802353..2803405	-	350	87200607	-	Saro_2594	-	hypothetical protein
2582	 63.44	0	2803495..2804361	+	288	87200608	-	Saro_2595	-	putative glutathione S-transferase YghU
2583	 62.98	0	2804790..2805413	+	207	87200609	-	Saro_2596	-	hypothetical protein
2584	 64.67	0	2805478..2806278	-	266	87200610	-	Saro_2597	-	acetoacetate decarboxylase
2585	 63.97	0	2806423..2807313	+	296	87200611	-	Saro_2598	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2586	 67.65	0	2807327..2808745	+	472	87200612	-	Saro_2599	-	aldehyde dehydrogenase
2587	 66.38	0	2808811..2809866	+	351	87200613	-	Saro_2600	-	AraC family transcriptional regulator
2588	 64.26	0	2809891..2812260	-	789	87200614	-	Saro_2601	-	TonB-dependent receptor
2589	 67.36	0	2812382..2813683	-	433	87200615	-	Saro_2602	-	4-aminobutyrate aminotransferase
2590	 66.45	0	2813680..2815092	-	470	87200616	-	Saro_2603	-	succinate semialdehyde dehydrogenase
2591	 66.10	0	2815108..2816343	-	411	87200617	-	Saro_2604	-	major facilitator transporter
2592	 66.67	0	2816589..2817617	+	342	87200618	-	Saro_2605	-	AraC family transcriptional regulator
2593	 65.60	0	2817653..2818495	+	280	87200619	-	Saro_2606	-	glutamine amidotransferase class-I
2594	 63.69	0	2818565..2819437	-	290	87200620	-	Saro_2607	-	extradiol ring-cleavage dioxygenase III subunit B
2595	 64.30	0	2819584..2820849	+	421	87200621	-	Saro_2608	-	cytochrome P450 family protein
2596	 66.14	0	2820902..2822227	+	441	87200622	-	Saro_2609	-	glutamate--ammonia ligase
2597	 65.91	0	2822235..2823695	+	486	87200623	-	Saro_2610	-	betaine-aldehyde dehydrogenase
2598	 66.04	0	2823727..2824686	-	319	87200624	-	Saro_2611	-	AraC family transcriptional regulator
2599	 66.50	0	2824855..2827278	+	807	87200625	-	Saro_2612	-	TonB-dependent receptor
2600	 63.35	0	2827306..2828118	+	270	87200626	-	Saro_2613	-	alpha/beta hydrolase
2601	 67.91	0	2828193..2828594	+	133	87200627	-	Saro_2614	-	globin
2602	 64.66	0	2828659..2829504	-	281	87200628	-	Saro_2615	-	hypothetical protein
2603	 67.71	0	2829738..2831276	-	512	87200629	-	Saro_2616	-	sulphate transporter
2604	 65.80	0	2831273..2831965	-	230	87200630	-	Saro_2617	-	carbonate dehydratase
2605	 66.97	0	2832091..2833401	-	436	87200631	-	Saro_2618	-	periplasmic sensor signal transduction histidine kinase
2606	 66.80	0	2833398..2834120	-	240	87200632	-	Saro_2619	-	two component transcriptional regulator
2607	 69.76	+1	2834191..2835159	-	322	87200633	-	Saro_2620	-	hypothetical protein
2608	 61.90	-1	2835202..2835537	-	111	87200634	-	Saro_2621	-	hypothetical protein
2609	 66.56	0	2835569..2837497	-	642	87200635	-	Saro_2622	-	AMP-dependent synthetase and ligase
2610	 63.18	0	2837522..2839213	-	563	87200636	-	Saro_2623	-	general substrate transporter
2611	 66.53	0	2839239..2840651	-	470	87200637	-	Saro_2624	-	hypothetical protein
2612	 64.77	0	2840827..2842776	+	649	87200638	-	Saro_2625	-	acetyl-coenzyme A synthetase
2613	 65.38	0	2842798..2843421	+	207	87200639	-	Saro_2626	-	two component LuxR family transcriptional regulator
2614	 65.50	0	2843398..2846748	-	1116	87200640	-	Saro_2627	-	multi-sensor hybrid histidine kinase
2615	 64.77	0	2864556..2865608	+	350	87200641	-	Saro_2628	-	glycosyl transferase family protein
2616	 66.01	0	2865605..2867119	+	504	87200642	-	Saro_2629	-	polysaccharide biosynthesis protein
2617	 64.10	0	2867173..2868108	+	311	87200643	-	Saro_2630	-	putative peptidase A2A
2618	 64.53	0	2868163..2869989	+	608	87200644	-	Saro_2631	-	ABC transporter related
2619	 62.69	0	2870055..2870255	-	66	87200645	-	Saro_2632	-	hypothetical protein
2620	 65.41	0	2870264..2870740	-	158	87200646	-	Saro_2633	-	GCN5-related N-acetyltransferase
2621	 64.82	0	2870737..2872038	-	433	87200647	hslU	Saro_2634	-	ATP-dependent protease ATP-binding subunit
2622	 64.52	0	2872135..2872692	-	185	87200648	-	Saro_2635	-	ATP-dependent protease peptidase subunit
2623	 65.66	0	2872738..2873232	-	164	87200649	-	Saro_2636	-	SmpA/OmlA
2624	 64.74	0	2873435..2873953	+	172	87200650	-	Saro_2637	-	hypothetical protein
2625	 63.57	0	2873950..2874465	+	171	87200651	-	Saro_2638	-	hypothetical protein
2626	 66.80	0	2874470..2875915	+	481	87200652	-	Saro_2639	-	MATE efflux family protein
2627	 61.99	-1	2875964..2877673	-	569	87200653	-	Saro_2640	-	hypothetical protein
2628	 62.55	0	2877773..2878525	-	250	87200654	-	Saro_2641	-	hypothetical protein
2629	 64.81	0	2878522..2879436	-	304	87200655	-	Saro_2642	-	hypothetical protein
2630	 68.83	+1	2879513..2880529	-	338	87200656	-	Saro_2643	-	hypothetical protein
2631	 66.46	0	2880616..2882082	-	488	87200657	-	Saro_2644	-	bacteriophage N4 adsorption protein B
2632	 68.37	0	2882210..2883382	+	390	87200658	-	Saro_2645	-	Na+/H+ antiporter NhaA
2633	 63.82	0	2883484..2883939	+	151	87200659	-	Saro_2646	-	Ferritin and Dps
2634	 66.80	0	2883943..2884677	-	244	87200660	-	Saro_2647	-	type II secretion system protein N
2635	 68.54	+1	2884674..2885153	-	159	87200661	-	Saro_2648	-	hypothetical protein
2636	 68.54	+1	2885150..2886268	-	372	87200662	-	Saro_2649	-	general secretion pathway L
2637	 63.46	0	2886278..2886745	-	155	87200663	-	Saro_2650	-	general secretion pathway protein G
2638	 66.75	0	2886748..2887977	-	409	87200664	-	Saro_2651	-	general secretion pathway protein F
2639	 68.31	0	2887977..2889494	-	505	87200665	-	Saro_2652	-	type II secretion system protein E
2640	 66.09	0	2889499..2891745	-	748	87200666	-	Saro_2653	-	type II and III secretion system protein
2641	 68.57	+1	2891742..2892581	-	279	87200667	-	Saro_2654	-	type II secretion system protein C
2642	 65.43	0	2892766..2893251	+	161	87200668	-	Saro_2655	-	NUDIX hydrolase
2643	 66.67	0	2893230..2894366	-	378	87200669	-	Saro_2656	-	DNA polymerase IV
2644	 65.73	0	2894432..2895709	+	425	87200670	-	Saro_2657	-	Bcr/CflA subfamily drug resistance transporter
2645	 66.67	0	2895710..2897635	-	641	87200671	-	Saro_2658	-	diguanylate cyclase/phosphodiesterase
2646	 68.80	+1	2897751..2898548	-	265	87200672	-	Saro_2659	-	LysR family transcriptional regulator
2647	 62.86	0	2898561..2898980	-	139	87200673	apaG	Saro_2660	-	ApaG
2648	 70.11	+1	2899056..2899664	+	202	87200674	-	Saro_2661	-	recombinational DNA repair protein (RecF pathway)-like
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.