IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2459	 63.97	0	2671180..2672589	+	469	87200485	-	Saro_2472	-	hypothetical protein
2460	 62.26	0	2672670..2673440	+	256	87200486	-	Saro_2473	-	short-chain dehydrogenase/reductase SDR
2461	 62.49	0	2673478..2674410	+	310	87200487	-	Saro_2474	-	hypothetical protein
2462	 67.80	0	2674487..2677045	-	852	87200488	-	Saro_2475	-	hypothetical protein
2463	 67.17	0	2677081..2678460	-	459	87200489	-	Saro_2476	-	NADH/ubiquinone/plastoquinone (complex I)
2464	 65.98	0	2678583..2679455	+	290	87200490	-	Saro_2477	-	LysR family transcriptional regulator
2465	 63.25	0	2679961..2680341	+	126	87200491	-	Saro_2478	-	hemimethylated DNA-binding region protein
2466	 61.89	-1	2680366..2681244	-	292	87200492	-	Saro_2479	-	hypothetical protein
2467	 72.88	+2	2681359..2682066	+	235	87200493	-	Saro_2480	-	GcrA cell cycle regulator
2468	 64.36	0	2682188..2683312	+	374	87200494	-	Saro_2481	-	diguanylate cyclase
2469	 63.56	0	2683433..2685751	-	772	87200495	-	Saro_2482	-	polynucleotide phosphorylase/polyadenylase
2470	 57.78	-2	2685914..2686183	-	89	87200496	-	Saro_2483	-	SSU ribosomal protein S15P
2471	 64.70	0	2686189..2687103	-	304	87200497	-	Saro_2484	-	tRNA pseudouridine synthase B
2472	 64.83	0	2687106..2687813	-	235	87200498	-	Saro_2485	-	peptidase M50
2473	 67.75	0	2687810..2688364	-	184	87200499	-	Saro_2486	-	GCN5-related N-acetyltransferase
2474	 65.80	0	2688361..2688939	-	192	87200500	-	Saro_2487	-	thymidine kinase
2475	 64.46	0	2688951..2689358	-	135	87200501	rbfA	Saro_2488	-	ribosome-binding factor A
2476	 62.94	0	2689361..2689897	-	178	87200502	-	Saro_2489	-	hypothetical protein
2477	 67.35	0	2690002..2692629	-	875	87200503	infB	Saro_2490	-	translation initiation factor IF-2
2478	 67.07	0	2692635..2693369	-	244	87200504	-	Saro_2491	-	hypothetical protein
2479	 65.50	0	2693350..2694984	-	544	87200505	nusA	Saro_2492	-	transcription elongation factor NusA
2480	 62.21	0	2694988..2695548	-	186	87200506	-	Saro_2493	-	hypothetical protein
2481	 56.99	-2	2695545..2695916	-	123	87200507	-	Saro_2494	-	hypothetical protein
2482	 65.33	0	2696022..2696246	+	74	87200508	-	Saro_2495	-	phage shock protein C, PspC
2483	 61.71	-1	2696315..2697040	-	241	87200509	-	Saro_2496	-	hypothetical protein
2484	 62.46	0	2697274..2697939	-	221	87200510	-	Saro_2497	-	TadE-like
2485	 61.51	-1	2697939..2698520	-	193	87200511	-	Saro_2498	-	TadE-like
2486	 58.23	-2	2698517..2700412	-	631	87200512	-	Saro_2499	-	hypothetical protein
2487	 60.76	-1	2700925..2702313	+	462	87200513	-	Saro_2500	-	hypothetical protein
2488	 64.54	0	2702379..2703551	-	390	87200514	-	Saro_2501	-	L-carnitine dehydratase/bile acid-inducible protein F
2489	 66.99	0	2703561..2705093	-	510	87200515	-	Saro_2502	-	acetyl-CoA acetyltransferase
2490	 63.46	0	2705109..2706542	-	477	87200516	-	Saro_2503	-	aldehyde dehydrogenase
2491	 65.59	0	2706568..2707683	-	371	87200517	-	Saro_2504	-	alcohol dehydrogenase, zinc-containing
2492	 67.49	0	2707680..2709611	-	643	87200518	-	Saro_2505	-	hypothetical protein
2493	 70.27	+1	2709608..2709940	-	110	87200519	-	Saro_2506	-	hypothetical protein
2494	 65.09	0	2710035..2710988	+	317	87200520	-	Saro_2507	-	LysR family transcriptional regulator
2495	 66.76	0	2710971..2712032	-	353	87200521	-	Saro_2508	-	AraC family transcriptional regulator
2496	 64.78	0	2712217..2714607	+	796	87200522	-	Saro_2509	-	TonB-dependent receptor
2497	 67.07	0	2714727..2715464	+	245	87200523	-	Saro_2510	-	short-chain dehydrogenase/reductase SDR
2498	 64.30	0	2715476..2716702	+	408	87200524	-	Saro_2511	-	acyl-CoA dehydrogenase-like
2499	 67.53	0	2716714..2717754	+	346	87200525	-	Saro_2512	-	alcohol dehydrogenase
2500	 66.15	0	2717729..2718886	-	385	87200526	-	Saro_2513	-	aminotransferase
2501	 65.08	0	2718951..2719328	+	125	87200527	-	Saro_2514	-	ModE family transcriptional regulator
2502	 69.24	+1	2719619..2720899	-	426	87200528	-	Saro_2515	-	amidohydrolase
2503	 67.09	0	2720987..2721454	-	155	87200529	-	Saro_2516	-	hypothetical protein
2504	 66.67	0	2721511..2721837	-	108	87200530	-	Saro_2517	-	hypothetical protein
2505	 65.78	0	2721893..2722678	-	261	87200531	-	Saro_2518	-	NUDIX hydrolase
2506	 58.18	-2	2722991..2723320	-	109	87200532	-	Saro_2519	-	glutaredoxin-like protein
2507	 67.52	0	2723345..2723578	-	77	87200533	-	Saro_2520	-	BolA-like protein
2508	 65.43	0	2723578..2723901	-	107	87200534	-	Saro_2521	-	hypothetical protein
2509	 67.20	0	2724014..2724580	-	188	87200535	-	Saro_2522	-	hypothetical protein
2510	 66.84	0	2724740..2725330	-	196	87200536	-	Saro_2523	-	hypothetical protein
2511	 68.07	0	2725475..2727619	-	714	87200537	-	Saro_2524	-	prolyl oligopeptidase
2512	 67.51	0	2727747..2729882	-	711	87200538	-	Saro_2525	-	prolyl oligopeptidase
2513	 65.49	0	2730199..2730624	-	141	87200539	rplQ	Saro_2526	-	50S ribosomal protein L17
2514	 61.21	-1	2730746..2731807	-	353	87200540	-	Saro_2527	-	DNA-directed RNA polymerase subunit alpha
2515	 65.90	0	2731923..2732312	-	129	87200541	-	Saro_2528	-	30S ribosomal protein S11
2516	 60.98	-1	2732361..2732729	-	122	87200542	rpsM	Saro_2529	-	30S ribosomal protein S13
2517	 68.42	0	2733048..2733446	-	132	87200543	-	Saro_2530	-	hexapaptide repeat-containing transferase
2518	 66.67	0	2733515..2734054	+	179	87200544	-	Saro_2531	-	hexapaptide repeat-containing transferase
2519	 67.62	0	2734123..2734542	+	139	87200545	-	Saro_2532	-	hypothetical protein
2520	 65.52	0	2734524..2736611	-	695	87200546	-	Saro_2533	-	(p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
2521	 70.54	+1	2736748..2737959	+	403	87200547	-	Saro_2534	-	hypothetical protein
2522	 68.42	0	2737946..2738572	-	208	87200548	-	Saro_2535	-	GCN5-related N-acetyltransferase
2523	 64.93	0	2738577..2739440	-	287	87200549	-	Saro_2536	-	coproporphyrinogen III oxidase
2524	 69.33	+1	2739485..2740159	+	224	87200550	-	Saro_2537	-	ICC-like phosphoesterases-like
2525	 58.81	-2	2740284..2740805	+	173	87200551	infC	Saro_2538	-	translation initiation factor IF-3
2526	 67.67	0	2741051..2741350	+	99	87200552	-	Saro_2539	-	hypothetical protein
2527	 66.79	0	2741432..2742238	+	268	87200553	-	Saro_2540	-	hypothetical protein
2528	 65.25	0	2742309..2744999	-	896	87200554	-	Saro_2541	-	TonB-dependent receptor
2529	 64.88	0	2745439..2747283	+	614	87200555	-	Saro_2542	-	GTP-binding protein TypA
2530	 66.51	0	2747347..2747997	-	216	87200556	-	Saro_2543	-	hypothetical protein
2531	 69.07	+1	2748173..2749378	+	401	87200557	-	Saro_2544	-	glycosyl transferase, group 1
2532	 66.67	0	2749375..2749923	-	182	87200558	-	Saro_2545	-	hypothetical protein
2533	 70.23	+1	2749923..2750567	-	214	87200559	-	Saro_2546	-	PadR family transcriptional regulator
2534	 67.84	0	2750630..2751988	+	452	87200560	-	Saro_2547	-	recombination factor protein RarA
2535	 70.45	+1	2751985..2752857	+	290	87200561	-	Saro_2548	-	hypothetical protein
2536	 57.00	-2	2753007..2753306	-	99	87200562	-	Saro_2549	-	hypothetical protein
2537	 66.24	0	2753448..2753918	+	156	87200563	-	Saro_2550	-	MarR family transcriptional regulator
2538	 61.48	-1	2753941..2754441	-	166	87200564	-	Saro_2551	-	7-cyano-7-deazaguanine reductase
2539	 72.31	+2	2754579..2755766	+	395	87200565	-	Saro_2552	-	hypothetical protein
2540	 65.98	0	2755872..2756741	+	289	87200566	-	Saro_2553	-	3-mercaptopyruvate sulfurtransferase
2541	 69.34	+1	2756814..2758046	+	410	87200567	-	Saro_2554	-	cystathionine beta-lyase
2542	 63.56	0	2758043..2759008	+	321	87200568	-	Saro_2555	-	MscS mechanosensitive ion channel
2543	 67.19	0	2759238..2760008	+	256	87200569	-	Saro_2556	-	uroporphyrinogen-III C-methyltransferase
2544	 67.68	0	2760005..2760301	+	98	87200570	-	Saro_2557	-	hypothetical protein
2545	 64.40	0	2760303..2761937	+	544	87200571	-	Saro_2558	-	nitrite and sulphite reductase 4Fe-4S region
2546	 68.29	0	2761930..2762361	+	143	87200572	-	Saro_2559	-	hypothetical protein
2547	 65.44	0	2762385..2763197	+	270	87200573	-	Saro_2560	-	phosphoadenosine phosphosulfate reductase
2548	 67.95	0	2763327..2764727	+	466	87200574	-	Saro_2561	-	anion transporter
2549	 64.73	0	2764917..2765588	+	223	87200575	-	Saro_2562	-	hypothetical protein
2550	 62.15	0	2765588..2766340	+	250	87200576	-	Saro_2563	-	hypothetical protein
2551	 69.92	+1	2766342..2767694	+	450	87200577	-	Saro_2564	-	TPR repeat-containing protein
2552	 69.21	+1	2767633..2768811	+	392	87200578	-	Saro_2565	-	putative transmembrane protein
2553	 66.12	0	2768850..2769950	+	366	87200579	-	Saro_2566	-	TrkA-N
2554	 67.71	0	2770011..2772794	-	927	87200580	-	Saro_2567	-	phosphoenolpyruvate carboxylase
2555	 67.15	0	2772819..2773433	-	204	87200581	-	Saro_2568	-	2-keto-3-deoxy-phosphogluconate aldolase
2556	 66.07	0	2773551..2774900	-	449	87200582	-	Saro_2569	-	coproporphyrinogen III oxidase
2557	 65.86	0	2774890..2775138	-	82	87200583	-	Saro_2570	-	hypothetical protein
2558	 62.67	0	2775135..2775284	-	49	87200584	-	Saro_2571	-	cytochrome oxidase maturation protein, cbb3-type
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.