IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2397	 63.43	0	2578324..2581104	+	926	87200423	-	Saro_2410	-	TonB-dependent receptor
2398	 70.02	+1	2581270..2583744	-	824	87200424	-	Saro_2411	-	twin-arginine translocation pathway signal
2399	 69.63	+1	2583756..2585444	-	562	87200425	-	Saro_2412	-	PTS system, N-acetylglucosamine-specific IIBC component
2400	 69.10	+1	2585441..2587951	-	836	87200426	-	Saro_2413	-	phosphoenolpyruvate--protein phosphotransferase
2401	 69.03	+1	2588004..2589146	-	380	87200427	-	Saro_2414	-	N-acetylglucosamine 6-phosphate deacetylase
2402	 67.05	0	2589143..2590183	-	346	87200428	-	Saro_2415	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
2403	 65.32	0	2590210..2590950	-	246	87200429	-	Saro_2416	-	GntR family transcriptional regulator
2404	 67.27	0	2591327..2593792	+	821	87200430	-	Saro_2417	-	Beta-N-acetylhexosaminidase
2405	 68.34	0	2593789..2596416	+	875	87200431	-	Saro_2418	-	beta-mannosidase
2406	 68.78	+1	2596413..2598962	+	849	87200432	-	Saro_2419	-	Beta-glucosidase
2407	 67.43	0	2598959..2600401	+	480	87200433	-	Saro_2420	-	twin-arginine translocation pathway signal
2408	 68.14	0	2600398..2602707	+	769	87200434	-	Saro_2421	-	alpha-1,2-mannosidase, putative
2409	 70.67	+1	2602704..2604977	+	757	87200435	-	Saro_2422	-	hypothetical protein
2410	 68.60	+1	2604974..2606890	+	638	87200436	-	Saro_2423	-	twin-arginine translocation pathway signal
2411	 67.70	0	2606887..2609781	-	964	87200437	-	Saro_2424	-	beta-galactosidase
2412	 70.47	+1	2609778..2610539	-	253	87200438	-	Saro_2425	-	CutC
2413	 66.78	0	2610554..2611399	-	281	87200439	-	Saro_2426	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2414	 66.38	0	2611396..2611743	-	115	87200440	-	Saro_2427	-	hypothetical protein
2415	 66.05	0	2611746..2613047	-	433	87200441	-	Saro_2428	-	L-fucose permease
2416	 66.53	0	2613078..2613818	-	246	87200442	-	Saro_2429	-	short-chain dehydrogenase/reductase SDR
2417	 67.91	0	2613829..2615037	-	402	87200443	-	Saro_2430	-	Altronate dehydratase
2418	 68.48	0	2615034..2615363	-	109	87200444	-	Saro_2431	-	D-galactarate dehydratase/Altronate hydrolase-like
2419	 68.11	0	2615344..2616177	-	277	87200445	-	Saro_2432	-	amidohydrolase 2
2420	 67.58	0	2616174..2617163	-	329	87200446	-	Saro_2433	-	aldo/keto reductase
2421	 65.57	0	2617282..2618100	-	272	87200447	-	Saro_2434	-	IclR family transcriptional regulator
2422	 66.31	0	2618189..2619034	-	281	87200448	-	Saro_2435	-	AraC family transcriptional regulator
2423	 66.75	0	2619147..2620316	+	389	87200449	-	Saro_2436	-	4-hydroxybenzoate 3-monooxygenase
2424	 68.30	0	2620391..2621065	+	224	87200450	-	Saro_2437	-	two component transcriptional regulator
2425	 64.54	0	2621275..2623953	-	892	87200451	-	Saro_2438	-	TonB-dependent receptor
2426	 64.65	0	2624046..2625635	-	529	87200452	-	Saro_2439	-	hypothetical protein
2427	 71.58	+1	2625899..2626285	+	128	87200453	-	Saro_2440	-	TPR repeat-containing protein
2428	 68.24	0	2626298..2627761	-	487	87200454	-	Saro_2441	-	carbohydrate kinase, FGGY
2429	 66.80	0	2627754..2629262	-	502	87200455	glpD	Saro_2442	-	glycerol-3-phosphate dehydrogenase
2430	 65.75	0	2629276..2630364	-	362	87200456	-	Saro_2443	-	alkanesulfonate monooxygenase
2431	 66.78	0	2630492..2631406	-	304	87200457	-	Saro_2444	-	aldo/keto reductase
2432	 64.99	0	2631403..2632416	-	337	87200458	-	Saro_2445	-	LacI family transcription regulator
2433	 65.47	0	2632413..2634422	-	669	87200459	-	Saro_2446	-	alpha-glucosidase
2434	 64.67	0	2634603..2636954	+	783	87200460	-	Saro_2447	-	TonB-dependent receptor
2435	 64.96	0	2637286..2638515	-	409	87200461	-	Saro_2448	-	major facilitator transporter
2436	 65.46	0	2638634..2639713	+	359	87200462	-	Saro_2449	-	hypothetical protein
2437	 66.77	0	2639757..2640728	-	323	87200463	-	Saro_2450	-	alcohol dehydrogenase
2438	 63.94	0	2640725..2641969	-	414	87200464	-	Saro_2451	-	cytochrome P450
2439	 65.03	0	2642004..2643956	-	650	87200465	-	Saro_2452	-	cyclohexanone monooxygenase
2440	 63.55	0	2644059..2645693	-	544	87200466	-	Saro_2453	-	AMP-dependent synthetase and ligase
2441	 62.98	0	2645737..2646387	-	216	87200467	-	Saro_2454	-	TetR family transcriptional regulator
2442	 64.89	0	2646384..2647562	-	392	87200468	-	Saro_2455	-	iron-containing alcohol dehydrogenase
2443	 67.32	0	2647738..2648964	+	408	87200469	-	Saro_2456	-	L-carnitine dehydratase/bile acid-inducible protein F
2444	 63.13	0	2648961..2649866	-	301	87200470	-	Saro_2457	-	beta-lactamase-like
2445	 60.87	-1	2649885..2652161	-	758	87200471	-	Saro_2458	-	TonB-dependent receptor
2446	 65.08	0	2652414..2653736	-	440	87200472	-	Saro_2459	-	hypothetical protein
2447	 64.38	0	2653733..2656573	-	946	87200473	-	Saro_2460	-	hypothetical protein
2448	 62.75	0	2656664..2657428	-	254	87200474	-	Saro_2461	-	phosphoesterase, PA-phosphatase related
2449	 65.08	0	2657679..2658371	+	230	87200475	-	Saro_2462	-	hypothetical protein
2450	 63.66	0	2658391..2659686	-	431	87200476	-	Saro_2463	-	fumarylacetoacetate hydrolase
2451	 61.02	-1	2659717..2660265	-	182	87200477	-	Saro_2464	-	glyoxalase/bleomycin resistance protein/dioxygenase
2452	 64.10	0	2660381..2661277	+	298	87200478	-	Saro_2465	-	LysR family transcriptional regulator
2453	 55.97	-2	2661639..2662601	+	320	87200479	-	Saro_2466	-	phosphoesterase, PA-phosphatase related
2454	 59.32	-1	2662662..2663654	+	330	87200480	-	Saro_2467	-	homocysteine S-methyltransferase
2455	 58.85	-2	2663813..2664580	-	255	87200481	-	Saro_2468	-	TetR family transcriptional regulator
2456	 62.48	0	2664741..2667272	+	843	87200482	-	Saro_2469	-	TonB-dependent receptor
2457	 63.41	0	2667360..2669720	+	786	87200483	-	Saro_2470	-	sulfatase
2458	 61.96	-1	2669717..2671183	+	488	87200484	-	Saro_2471	-	hypothetical protein
2459	 63.97	0	2671180..2672589	+	469	87200485	-	Saro_2472	-	hypothetical protein
2460	 62.26	0	2672670..2673440	+	256	87200486	-	Saro_2473	-	short-chain dehydrogenase/reductase SDR
2461	 62.49	0	2673478..2674410	+	310	87200487	-	Saro_2474	-	hypothetical protein
2462	 67.80	0	2674487..2677045	-	852	87200488	-	Saro_2475	-	hypothetical protein
2463	 67.17	0	2677081..2678460	-	459	87200489	-	Saro_2476	-	NADH/ubiquinone/plastoquinone (complex I)
2464	 65.98	0	2678583..2679455	+	290	87200490	-	Saro_2477	-	LysR family transcriptional regulator
2465	 63.25	0	2679961..2680341	+	126	87200491	-	Saro_2478	-	hemimethylated DNA-binding region protein
2466	 61.89	-1	2680366..2681244	-	292	87200492	-	Saro_2479	-	hypothetical protein
2467	 72.88	+2	2681359..2682066	+	235	87200493	-	Saro_2480	-	GcrA cell cycle regulator
2468	 64.36	0	2682188..2683312	+	374	87200494	-	Saro_2481	-	diguanylate cyclase
2469	 63.56	0	2683433..2685751	-	772	87200495	-	Saro_2482	-	polynucleotide phosphorylase/polyadenylase
2470	 57.78	-2	2685914..2686183	-	89	87200496	-	Saro_2483	-	SSU ribosomal protein S15P
2471	 64.70	0	2686189..2687103	-	304	87200497	-	Saro_2484	-	tRNA pseudouridine synthase B
2472	 64.83	0	2687106..2687813	-	235	87200498	-	Saro_2485	-	peptidase M50
2473	 67.75	0	2687810..2688364	-	184	87200499	-	Saro_2486	-	GCN5-related N-acetyltransferase
2474	 65.80	0	2688361..2688939	-	192	87200500	-	Saro_2487	-	thymidine kinase
2475	 64.46	0	2688951..2689358	-	135	87200501	rbfA	Saro_2488	-	ribosome-binding factor A
2476	 62.94	0	2689361..2689897	-	178	87200502	-	Saro_2489	-	hypothetical protein
2477	 67.35	0	2690002..2692629	-	875	87200503	infB	Saro_2490	-	translation initiation factor IF-2
2478	 67.07	0	2692635..2693369	-	244	87200504	-	Saro_2491	-	hypothetical protein
2479	 65.50	0	2693350..2694984	-	544	87200505	nusA	Saro_2492	-	transcription elongation factor NusA
2480	 62.21	0	2694988..2695548	-	186	87200506	-	Saro_2493	-	hypothetical protein
2481	 56.99	-2	2695545..2695916	-	123	87200507	-	Saro_2494	-	hypothetical protein
2482	 65.33	0	2696022..2696246	+	74	87200508	-	Saro_2495	-	phage shock protein C, PspC
2483	 61.71	-1	2696315..2697040	-	241	87200509	-	Saro_2496	-	hypothetical protein
2484	 62.46	0	2697274..2697939	-	221	87200510	-	Saro_2497	-	TadE-like
2485	 61.51	-1	2697939..2698520	-	193	87200511	-	Saro_2498	-	TadE-like
2486	 58.23	-2	2698517..2700412	-	631	87200512	-	Saro_2499	-	hypothetical protein
2487	 60.76	-1	2700925..2702313	+	462	87200513	-	Saro_2500	-	hypothetical protein
2488	 64.54	0	2702379..2703551	-	390	87200514	-	Saro_2501	-	L-carnitine dehydratase/bile acid-inducible protein F
2489	 66.99	0	2703561..2705093	-	510	87200515	-	Saro_2502	-	acetyl-CoA acetyltransferase
2490	 63.46	0	2705109..2706542	-	477	87200516	-	Saro_2503	-	aldehyde dehydrogenase
2491	 65.59	0	2706568..2707683	-	371	87200517	-	Saro_2504	-	alcohol dehydrogenase, zinc-containing
2492	 67.49	0	2707680..2709611	-	643	87200518	-	Saro_2505	-	hypothetical protein
2493	 70.27	+1	2709608..2709940	-	110	87200519	-	Saro_2506	-	hypothetical protein
2494	 65.09	0	2710035..2710988	+	317	87200520	-	Saro_2507	-	LysR family transcriptional regulator
2495	 66.76	0	2710971..2712032	-	353	87200521	-	Saro_2508	-	AraC family transcriptional regulator
2496	 64.78	0	2712217..2714607	+	796	87200522	-	Saro_2509	-	TonB-dependent receptor
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.