IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2348	 61.08	-1	2508639..2509622	-	327	87200374	-	Saro_2361	-	flagellin-like
2349	 68.14	0	2509800..2512523	+	907	87200375	-	Saro_2362	-	helicase c2
2350	 63.00	0	2512520..2513065	+	181	87200376	-	Saro_2363	-	putative phosphohistidine phosphatase, SixA
2351	 62.94	0	2513062..2513517	-	151	87200377	-	Saro_2364	-	MerR family transcriptional regulator
2352	 60.61	-1	2513528..2513824	-	98	87200378	-	Saro_2365	-	integration host factor, alpha subunit
2353	 64.83	0	2513945..2514922	-	325	87200379	-	Saro_2366	-	3-oxoacyl-[acyl-carrier-protein] synthase III
2354	 66.39	0	2514919..2516013	-	364	87200380	-	Saro_2367	-	putative glycerol-3-phosphate acyltransferase PlsX
2355	 63.33	0	2516040..2516219	-	59	87200381	rpmF	Saro_2368	-	50S ribosomal protein L32
2356	 64.89	0	2516463..2516855	+	130	87200382	-	Saro_2369	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
2357	 61.11	-1	2516920..2517657	-	245	87200383	-	Saro_2370	-	beta-lactamase-like
2358	 66.52	0	2517870..2518571	-	233	87200384	-	Saro_2371	-	putative phage repressor
2359	 60.85	-1	2518688..2518876	+	62	87200385	-	Saro_2372	-	hypothetical protein
2360	 66.40	0	2518866..2519243	+	125	87200386	-	Saro_2373	-	hypothetical protein
2361	 63.99	0	2519335..2523933	-	1532	87200387	-	Saro_2374	-	multihaem cytochrome
2362	 63.89	0	2523933..2525951	-	672	87200388	-	Saro_2375	-	hypothetical protein
2363	 64.66	0	2525951..2527939	-	662	87200389	-	Saro_2376	-	hypothetical protein
2364	 66.53	0	2527939..2529354	-	471	87200390	-	Saro_2377	-	hypothetical protein
2365	 63.05	0	2529536..2530972	-	478	87200391	-	Saro_2378	-	aldehyde dehydrogenase
2366	 61.23	-1	2531046..2532737	-	563	87200392	-	Saro_2379	-	acetolactate synthase
2367	 65.26	0	2532877..2533800	-	307	87200393	-	Saro_2380	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2368	 65.05	0	2533879..2535360	-	493	87200394	-	Saro_2381	-	cysteinyl-tRNA synthetase
2369	 66.17	0	2535399..2544608	-	3069	87200395	-	Saro_2382	-	hypothetical protein
2370	 66.99	0	2544608..2546482	-	624	87200396	-	Saro_2383	-	hemolysin activation/secretion protein-like
2371	 68.09	0	2546598..2547368	-	256	87200397	-	Saro_2384	-	hypothetical protein
2372	 68.20	0	2547384..2548166	-	260	87200398	-	Saro_2385	-	hypothetical protein
2373	 65.84	0	2548153..2550198	-	681	87200399	-	Saro_2386	-	adenylate/guanylate cyclase
2374	 67.36	0	2550202..2553357	-	1051	87200400	-	Saro_2387	-	hypothetical protein
2375	 67.11	0	2553517..2554197	-	226	87200401	-	Saro_2388	-	nitroreductase
2376	 66.83	0	2554241..2556055	-	604	87200402	-	Saro_2389	-	cobalt chelatase, pCobT subunit
2377	 63.00	0	2556130..2556783	-	217	87200403	-	Saro_2390	-	putative translaldolase
2378	 67.54	0	2556909..2557592	-	227	87200404	-	Saro_2391	-	hypothetical protein
2379	 66.96	0	2557710..2558402	-	230	87200405	-	Saro_2392	-	hypothetical protein
2380	 69.94	+1	2558451..2560652	+	733	87200406	-	Saro_2393	-	primosome assembly protein PriA
2381	 67.37	0	2560701..2562269	+	522	87200407	-	Saro_2394	-	deoxyribodipyrimidine photolyase-related protein
2382	 67.47	0	2562266..2563135	-	289	87200408	-	Saro_2395	-	abortive infection protein
2383	 69.86	+1	2563138..2564169	-	343	87200409	-	Saro_2396	-	transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
2384	 65.63	0	2564166..2564648	-	160	87200410	-	Saro_2397	-	hypothetical protein
2385	 68.30	0	2564711..2566306	+	531	87200411	-	Saro_2398	-	peptidase S1 and S6, chymotrypsin/Hap
2386	 64.40	0	2566457..2567029	+	190	87200412	-	Saro_2399	-	F0F1 ATP synthase subunit delta
2387	 64.51	0	2567075..2568604	+	509	87200413	-	Saro_2400	-	F0F1 ATP synthase subunit alpha
2388	 63.34	0	2568929..2569801	+	290	87200414	-	Saro_2401	-	F0F1 ATP synthase subunit gamma
2389	 65.77	0	2569866..2571311	+	481	87200415	-	Saro_2402	-	F0F1 ATP synthase subunit beta
2390	 64.34	0	2571460..2571717	+	85	87200416	-	Saro_2403	-	F0F1 ATP synthase subunit epsilon
2391	 63.35	0	2571954..2573342	+	462	87200417	-	Saro_2404	-	glycine cleavage T protein (aminomethyl transferase)
2392	 64.52	0	2573603..2574442	+	279	87200418	-	Saro_2405	-	glutathione S-transferase-like
2393	 66.27	0	2574470..2575483	-	337	87200419	-	Saro_2406	-	twin-arginine translocation pathway signal
2394	 70.37	+1	2575480..2576235	-	251	87200420	-	Saro_2407	-	IclR family transcriptional regulator
2395	 69.72	+1	2576232..2576624	-	130	87200421	-	Saro_2408	-	hypothetical protein
2396	 66.14	0	2576621..2577754	-	377	87200422	-	Saro_2409	-	methionine synthase, vitamin-B12 independent
2397	 63.43	0	2578324..2581104	+	926	87200423	-	Saro_2410	-	TonB-dependent receptor
2398	 70.02	+1	2581270..2583744	-	824	87200424	-	Saro_2411	-	twin-arginine translocation pathway signal
2399	 69.63	+1	2583756..2585444	-	562	87200425	-	Saro_2412	-	PTS system, N-acetylglucosamine-specific IIBC component
2400	 69.10	+1	2585441..2587951	-	836	87200426	-	Saro_2413	-	phosphoenolpyruvate--protein phosphotransferase
2401	 69.03	+1	2588004..2589146	-	380	87200427	-	Saro_2414	-	N-acetylglucosamine 6-phosphate deacetylase
2402	 67.05	0	2589143..2590183	-	346	87200428	-	Saro_2415	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
2403	 65.32	0	2590210..2590950	-	246	87200429	-	Saro_2416	-	GntR family transcriptional regulator
2404	 67.27	0	2591327..2593792	+	821	87200430	-	Saro_2417	-	Beta-N-acetylhexosaminidase
2405	 68.34	0	2593789..2596416	+	875	87200431	-	Saro_2418	-	beta-mannosidase
2406	 68.78	+1	2596413..2598962	+	849	87200432	-	Saro_2419	-	Beta-glucosidase
2407	 67.43	0	2598959..2600401	+	480	87200433	-	Saro_2420	-	twin-arginine translocation pathway signal
2408	 68.14	0	2600398..2602707	+	769	87200434	-	Saro_2421	-	alpha-1,2-mannosidase, putative
2409	 70.67	+1	2602704..2604977	+	757	87200435	-	Saro_2422	-	hypothetical protein
2410	 68.60	+1	2604974..2606890	+	638	87200436	-	Saro_2423	-	twin-arginine translocation pathway signal
2411	 67.70	0	2606887..2609781	-	964	87200437	-	Saro_2424	-	beta-galactosidase
2412	 70.47	+1	2609778..2610539	-	253	87200438	-	Saro_2425	-	CutC
2413	 66.78	0	2610554..2611399	-	281	87200439	-	Saro_2426	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2414	 66.38	0	2611396..2611743	-	115	87200440	-	Saro_2427	-	hypothetical protein
2415	 66.05	0	2611746..2613047	-	433	87200441	-	Saro_2428	-	L-fucose permease
2416	 66.53	0	2613078..2613818	-	246	87200442	-	Saro_2429	-	short-chain dehydrogenase/reductase SDR
2417	 67.91	0	2613829..2615037	-	402	87200443	-	Saro_2430	-	Altronate dehydratase
2418	 68.48	0	2615034..2615363	-	109	87200444	-	Saro_2431	-	D-galactarate dehydratase/Altronate hydrolase-like
2419	 68.11	0	2615344..2616177	-	277	87200445	-	Saro_2432	-	amidohydrolase 2
2420	 67.58	0	2616174..2617163	-	329	87200446	-	Saro_2433	-	aldo/keto reductase
2421	 65.57	0	2617282..2618100	-	272	87200447	-	Saro_2434	-	IclR family transcriptional regulator
2422	 66.31	0	2618189..2619034	-	281	87200448	-	Saro_2435	-	AraC family transcriptional regulator
2423	 66.75	0	2619147..2620316	+	389	87200449	-	Saro_2436	-	4-hydroxybenzoate 3-monooxygenase
2424	 68.30	0	2620391..2621065	+	224	87200450	-	Saro_2437	-	two component transcriptional regulator
2425	 64.54	0	2621275..2623953	-	892	87200451	-	Saro_2438	-	TonB-dependent receptor
2426	 64.65	0	2624046..2625635	-	529	87200452	-	Saro_2439	-	hypothetical protein
2427	 71.58	+1	2625899..2626285	+	128	87200453	-	Saro_2440	-	TPR repeat-containing protein
2428	 68.24	0	2626298..2627761	-	487	87200454	-	Saro_2441	-	carbohydrate kinase, FGGY
2429	 66.80	0	2627754..2629262	-	502	87200455	glpD	Saro_2442	-	glycerol-3-phosphate dehydrogenase
2430	 65.75	0	2629276..2630364	-	362	87200456	-	Saro_2443	-	alkanesulfonate monooxygenase
2431	 66.78	0	2630492..2631406	-	304	87200457	-	Saro_2444	-	aldo/keto reductase
2432	 64.99	0	2631403..2632416	-	337	87200458	-	Saro_2445	-	LacI family transcription regulator
2433	 65.47	0	2632413..2634422	-	669	87200459	-	Saro_2446	-	alpha-glucosidase
2434	 64.67	0	2634603..2636954	+	783	87200460	-	Saro_2447	-	TonB-dependent receptor
2435	 64.96	0	2637286..2638515	-	409	87200461	-	Saro_2448	-	major facilitator transporter
2436	 65.46	0	2638634..2639713	+	359	87200462	-	Saro_2449	-	hypothetical protein
2437	 66.77	0	2639757..2640728	-	323	87200463	-	Saro_2450	-	alcohol dehydrogenase
2438	 63.94	0	2640725..2641969	-	414	87200464	-	Saro_2451	-	cytochrome P450
2439	 65.03	0	2642004..2643956	-	650	87200465	-	Saro_2452	-	cyclohexanone monooxygenase
2440	 63.55	0	2644059..2645693	-	544	87200466	-	Saro_2453	-	AMP-dependent synthetase and ligase
2441	 62.98	0	2645737..2646387	-	216	87200467	-	Saro_2454	-	TetR family transcriptional regulator
2442	 64.89	0	2646384..2647562	-	392	87200468	-	Saro_2455	-	iron-containing alcohol dehydrogenase
2443	 67.32	0	2647738..2648964	+	408	87200469	-	Saro_2456	-	L-carnitine dehydratase/bile acid-inducible protein F
2444	 63.13	0	2648961..2649866	-	301	87200470	-	Saro_2457	-	beta-lactamase-like
2445	 60.87	-1	2649885..2652161	-	758	87200471	-	Saro_2458	-	TonB-dependent receptor
2446	 65.08	0	2652414..2653736	-	440	87200472	-	Saro_2459	-	hypothetical protein
2447	 64.38	0	2653733..2656573	-	946	87200473	-	Saro_2460	-	hypothetical protein
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.