IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2310	 63.47	0	2466404..2467186	+	260	87200336	sdhB	Saro_2322	-	succinate dehydrogenase iron-sulfur subunit
2311	 69.89	+1	2467191..2467655	+	154	87200337	-	Saro_2323	-	phenylacetic acid degradation-related protein
2312	 66.75	0	2467652..2468785	+	377	87200338	-	Saro_2324	-	AFG1-like ATPase
2313	 49.79	-2	2468833..2469075	+	80	87200339	-	Saro_2325	-	hypothetical protein
2314	 59.13	-1	2469082..2471364	-	760	87200340	-	Saro_2326	-	diguanylate phosphodiesterase
2315	 67.88	0	2471447..2473336	-	629	87200341	-	Saro_2327	-	asparagine synthase, glutamine-hydrolyzing
2316	 68.64	+1	2473346..2474914	-	522	87200342	-	Saro_2328	-	hypothetical protein
2317	 71.29	+1	2474901..2476133	-	410	87200343	-	Saro_2329	-	glycosyl transferase, group 1
2318	 67.14	0	2476130..2477185	-	351	87200344	-	Saro_2330	-	hypothetical protein
2319	 66.78	0	2477182..2478063	-	293	87200345	-	Saro_2331	-	polysaccharide deacetylase
2320	 67.77	0	2478089..2479357	-	422	87200346	-	Saro_2332	-	ATPase
2321	 67.49	0	2479376..2481082	-	568	87200347	-	Saro_2333	-	hypothetical protein
2322	 69.27	+1	2481079..2481999	-	306	87200348	-	Saro_2334	-	putative exopolysaccharide biosynthesis protein
2323	 68.84	+1	2482011..2483528	-	505	87200349	-	Saro_2335	-	lipopolysaccharide biosynthesis
2324	 64.97	0	2483554..2484201	-	215	87200350	-	Saro_2336	-	polysaccharide export protein
2325	 65.61	0	2484413..2485639	-	408	87200351	-	Saro_2337	-	Orn/DAP/Arg decarboxylase 2
2326	 68.50	0	2485636..2487165	-	509	87200352	-	Saro_2338	-	AMP-dependent synthetase and ligase
2327	 66.87	0	2487195..2488199	+	334	87200353	-	Saro_2339	-	hypothetical protein
2328	 62.02	-1	2488259..2488516	+	85	87200354	-	Saro_2340	-	hypothetical protein
2329	 71.13	+1	2488513..2489184	+	223	87200355	-	Saro_2341	-	hypothetical protein
2330	 69.84	+1	2489181..2489969	+	262	87200356	-	Saro_2342	-	esterase/lipase/thioesterase family protein
2331	 66.15	0	2489959..2490927	-	322	87200357	-	Saro_2343	-	thioredoxin reductase
2332	 68.69	+1	2491066..2491854	-	262	87200358	-	Saro_2344	-	protein tyrosine/serine phosphatase
2333	 66.92	0	2491959..2492348	-	129	87200359	-	Saro_2345	-	response regulator receiver domain-containing protein
2334	 63.38	0	2492345..2493439	-	364	87200360	-	Saro_2346	-	hypothetical protein
2335	 64.14	0	2493513..2493947	-	144	87200361	-	Saro_2347	-	phenylacetic acid degradation-related protein
2336	 68.25	0	2493944..2495143	-	399	87200362	-	Saro_2348	-	peptidase M20D, amidohydrolase
2337	 66.59	0	2495287..2496534	+	415	87200363	-	Saro_2349	-	acetyl-CoA acetyltransferase
2338	 68.27	0	2496607..2497980	-	457	87200364	-	Saro_2350	-	peptidase M28
2339	 63.10	0	2498081..2499760	+	559	87200365	-	Saro_2351	-	putative ABC transporter ATP-binding protein
2340	 64.58	0	2499782..2500261	-	159	87200366	-	Saro_2352	-	hypothetical protein
2341	 68.18	0	2500513..2501571	+	352	87200367	-	Saro_2353	-	hypothetical protein
2342	 60.08	-1	2502186..2502959	+	257	87200368	-	Saro_2355	-	2OG-Fe(II) oxygenase
2343	 66.72	0	2502950..2504809	+	619	87200369	-	Saro_2356	-	hypothetical protein
2344	 65.69	0	2504873..2505280	+	135	87200370	-	Saro_2357	-	hypothetical protein
2345	 66.92	0	2505304..2505699	+	131	87200371	-	Saro_2358	-	hypothetical protein
2346	 64.57	0	2505703..2506848	+	381	87200372	-	Saro_2359	-	glutathionylspermidine synthase
2347	 62.87	0	2506853..2508457	-	534	87200373	lysK	Saro_2360	-	lysyl-tRNA synthetase
2348	 61.08	-1	2508639..2509622	-	327	87200374	-	Saro_2361	-	flagellin-like
2349	 68.14	0	2509800..2512523	+	907	87200375	-	Saro_2362	-	helicase c2
2350	 63.00	0	2512520..2513065	+	181	87200376	-	Saro_2363	-	putative phosphohistidine phosphatase, SixA
2351	 62.94	0	2513062..2513517	-	151	87200377	-	Saro_2364	-	MerR family transcriptional regulator
2352	 60.61	-1	2513528..2513824	-	98	87200378	-	Saro_2365	-	integration host factor, alpha subunit
2353	 64.83	0	2513945..2514922	-	325	87200379	-	Saro_2366	-	3-oxoacyl-[acyl-carrier-protein] synthase III
2354	 66.39	0	2514919..2516013	-	364	87200380	-	Saro_2367	-	putative glycerol-3-phosphate acyltransferase PlsX
2355	 63.33	0	2516040..2516219	-	59	87200381	rpmF	Saro_2368	-	50S ribosomal protein L32
2356	 64.89	0	2516463..2516855	+	130	87200382	-	Saro_2369	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
2357	 61.11	-1	2516920..2517657	-	245	87200383	-	Saro_2370	-	beta-lactamase-like
2358	 66.52	0	2517870..2518571	-	233	87200384	-	Saro_2371	-	putative phage repressor
2359	 60.85	-1	2518688..2518876	+	62	87200385	-	Saro_2372	-	hypothetical protein
2360	 66.40	0	2518866..2519243	+	125	87200386	-	Saro_2373	-	hypothetical protein
2361	 63.99	0	2519335..2523933	-	1532	87200387	-	Saro_2374	-	multihaem cytochrome
2362	 63.89	0	2523933..2525951	-	672	87200388	-	Saro_2375	-	hypothetical protein
2363	 64.66	0	2525951..2527939	-	662	87200389	-	Saro_2376	-	hypothetical protein
2364	 66.53	0	2527939..2529354	-	471	87200390	-	Saro_2377	-	hypothetical protein
2365	 63.05	0	2529536..2530972	-	478	87200391	-	Saro_2378	-	aldehyde dehydrogenase
2366	 61.23	-1	2531046..2532737	-	563	87200392	-	Saro_2379	-	acetolactate synthase
2367	 65.26	0	2532877..2533800	-	307	87200393	-	Saro_2380	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2368	 65.05	0	2533879..2535360	-	493	87200394	-	Saro_2381	-	cysteinyl-tRNA synthetase
2369	 66.17	0	2535399..2544608	-	3069	87200395	-	Saro_2382	-	hypothetical protein
2370	 66.99	0	2544608..2546482	-	624	87200396	-	Saro_2383	-	hemolysin activation/secretion protein-like
2371	 68.09	0	2546598..2547368	-	256	87200397	-	Saro_2384	-	hypothetical protein
2372	 68.20	0	2547384..2548166	-	260	87200398	-	Saro_2385	-	hypothetical protein
2373	 65.84	0	2548153..2550198	-	681	87200399	-	Saro_2386	-	adenylate/guanylate cyclase
2374	 67.36	0	2550202..2553357	-	1051	87200400	-	Saro_2387	-	hypothetical protein
2375	 67.11	0	2553517..2554197	-	226	87200401	-	Saro_2388	-	nitroreductase
2376	 66.83	0	2554241..2556055	-	604	87200402	-	Saro_2389	-	cobalt chelatase, pCobT subunit
2377	 63.00	0	2556130..2556783	-	217	87200403	-	Saro_2390	-	putative translaldolase
2378	 67.54	0	2556909..2557592	-	227	87200404	-	Saro_2391	-	hypothetical protein
2379	 66.96	0	2557710..2558402	-	230	87200405	-	Saro_2392	-	hypothetical protein
2380	 69.94	+1	2558451..2560652	+	733	87200406	-	Saro_2393	-	primosome assembly protein PriA
2381	 67.37	0	2560701..2562269	+	522	87200407	-	Saro_2394	-	deoxyribodipyrimidine photolyase-related protein
2382	 67.47	0	2562266..2563135	-	289	87200408	-	Saro_2395	-	abortive infection protein
2383	 69.86	+1	2563138..2564169	-	343	87200409	-	Saro_2396	-	transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
2384	 65.63	0	2564166..2564648	-	160	87200410	-	Saro_2397	-	hypothetical protein
2385	 68.30	0	2564711..2566306	+	531	87200411	-	Saro_2398	-	peptidase S1 and S6, chymotrypsin/Hap
2386	 64.40	0	2566457..2567029	+	190	87200412	-	Saro_2399	-	F0F1 ATP synthase subunit delta
2387	 64.51	0	2567075..2568604	+	509	87200413	-	Saro_2400	-	F0F1 ATP synthase subunit alpha
2388	 63.34	0	2568929..2569801	+	290	87200414	-	Saro_2401	-	F0F1 ATP synthase subunit gamma
2389	 65.77	0	2569866..2571311	+	481	87200415	-	Saro_2402	-	F0F1 ATP synthase subunit beta
2390	 64.34	0	2571460..2571717	+	85	87200416	-	Saro_2403	-	F0F1 ATP synthase subunit epsilon
2391	 63.35	0	2571954..2573342	+	462	87200417	-	Saro_2404	-	glycine cleavage T protein (aminomethyl transferase)
2392	 64.52	0	2573603..2574442	+	279	87200418	-	Saro_2405	-	glutathione S-transferase-like
2393	 66.27	0	2574470..2575483	-	337	87200419	-	Saro_2406	-	twin-arginine translocation pathway signal
2394	 70.37	+1	2575480..2576235	-	251	87200420	-	Saro_2407	-	IclR family transcriptional regulator
2395	 69.72	+1	2576232..2576624	-	130	87200421	-	Saro_2408	-	hypothetical protein
2396	 66.14	0	2576621..2577754	-	377	87200422	-	Saro_2409	-	methionine synthase, vitamin-B12 independent
2397	 63.43	0	2578324..2581104	+	926	87200423	-	Saro_2410	-	TonB-dependent receptor
2398	 70.02	+1	2581270..2583744	-	824	87200424	-	Saro_2411	-	twin-arginine translocation pathway signal
2399	 69.63	+1	2583756..2585444	-	562	87200425	-	Saro_2412	-	PTS system, N-acetylglucosamine-specific IIBC component
2400	 69.10	+1	2585441..2587951	-	836	87200426	-	Saro_2413	-	phosphoenolpyruvate--protein phosphotransferase
2401	 69.03	+1	2588004..2589146	-	380	87200427	-	Saro_2414	-	N-acetylglucosamine 6-phosphate deacetylase
2402	 67.05	0	2589143..2590183	-	346	87200428	-	Saro_2415	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
2403	 65.32	0	2590210..2590950	-	246	87200429	-	Saro_2416	-	GntR family transcriptional regulator
2404	 67.27	0	2591327..2593792	+	821	87200430	-	Saro_2417	-	Beta-N-acetylhexosaminidase
2405	 68.34	0	2593789..2596416	+	875	87200431	-	Saro_2418	-	beta-mannosidase
2406	 68.78	+1	2596413..2598962	+	849	87200432	-	Saro_2419	-	Beta-glucosidase
2407	 67.43	0	2598959..2600401	+	480	87200433	-	Saro_2420	-	twin-arginine translocation pathway signal
2408	 68.14	0	2600398..2602707	+	769	87200434	-	Saro_2421	-	alpha-1,2-mannosidase, putative
2409	 70.67	+1	2602704..2604977	+	757	87200435	-	Saro_2422	-	hypothetical protein
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.