IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2258	 66.67	0	2410112..2410615	-	167	87200284	-	Saro_2270	-	hypothetical protein
2259	 66.26	0	2410645..2411385	-	246	87200285	-	Saro_2271	-	hypothetical protein
2260	 65.64	0	2411490..2411978	-	162	87200286	-	Saro_2272	-	hypothetical protein
2261	 66.45	0	2411985..2413355	-	456	87200287	-	Saro_2273	-	hypothetical protein
2262	 70.91	+1	2413476..2415197	+	573	87200288	-	Saro_2274	-	single-stranded-DNA-specific exonuclease RecJ
2263	 67.26	0	2415703..2416887	+	394	87200289	-	Saro_2275	-	histidine kinase
2264	 63.09	0	2416941..2418002	+	353	87200290	-	Saro_2276	-	phosphate binding protein, putative
2265	 66.09	0	2418021..2419403	+	460	87200291	-	Saro_2277	-	phosphate ABC transporter permease
2266	 67.37	0	2419411..2420697	+	428	87200292	-	Saro_2278	-	phosphate ABC transporter permease
2267	 62.32	0	2420699..2421526	+	275	87200293	-	Saro_2279	-	phosphate ABC transporter permease
2268	 62.74	0	2421536..2422222	+	228	87200294	-	Saro_2280	-	phosphate uptake regulator, PhoU
2269	 67.83	0	2422368..2423057	+	229	87200295	-	Saro_2281	-	two component transcriptional regulator
2270	 65.79	0	2423106..2424590	-	494	87200296	-	Saro_2282	-	Alg9-like mannosyltransferase
2271	 59.34	-1	2424614..2424886	-	90	87200297	-	Saro_2283	-	hypothetical protein
2272	 64.25	0	2424892..2426544	-	550	87200298	-	Saro_2284	-	beta-lactamase-like
2273	 63.73	0	2426541..2427323	-	260	87200299	-	Saro_2285	-	pantothenate kinase
2274	 66.53	0	2427307..2428038	-	243	87200300	-	Saro_2286	-	biotin--acetyl-CoA-carboxylase ligase
2275	 64.28	0	2428043..2429506	-	487	87200301	-	Saro_2287	-	NADH dehydrogenase subunit N
2276	 62.86	0	2429506..2431056	-	516	87200302	-	Saro_2288	-	proton-translocating NADH-quinone oxidoreductase, chain M
2277	 63.29	0	2431053..2433122	-	689	87200303	-	Saro_2289	-	NADH dehydrogenase subunit L
2278	 58.17	-2	2433132..2433437	-	101	87200304	-	Saro_2290	-	NADH-ubiquinone oxidoreductase, chain 4L
2279	 62.78	0	2433437..2434054	-	205	87200305	-	Saro_2291	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
2280	 60.49	-1	2434082..2434567	-	161	87200306	-	Saro_2292	-	NADH dehydrogenase subunit I
2281	 60.63	-1	2434564..2435607	-	347	87200307	-	Saro_2293	-	respiratory-chain NADH dehydrogenase, subunit 1
2282	 64.98	0	2435747..2437756	-	669	87200308	-	Saro_2294	-	NADH dehydrogenase subunit G
2283	 66.12	0	2437874..2439160	-	428	87200309	-	Saro_2295	-	NADH dehydrogenase I subunit F
2284	 64.87	0	2439162..2439830	-	222	87200310	-	Saro_2296	-	NADH-quinone oxidoreductase, E subunit
2285	 64.14	0	2439823..2440020	-	65	87200311	-	Saro_2297	-	hypothetical protein
2286	 57.87	-2	2440017..2440232	-	71	87200312	-	Saro_2298	-	hypothetical protein
2287	 63.53	0	2440229..2440579	-	116	87200313	-	Saro_2299	-	hypothetical protein
2288	 63.12	0	2440576..2441787	-	403	87200314	-	Saro_2300	-	NADH dehydrogenase subunit D
2289	 65.59	0	2441936..2442865	-	309	87200315	-	Saro_2301	-	NADH (or F420H2) dehydrogenase, subunit C
2290	 65.20	0	2442879..2443424	-	181	87200316	-	Saro_2302	-	NADH dehydrogenase subunit B
2291	 60.72	-1	2443430..2443816	-	128	87200317	-	Saro_2303	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
2292	 64.99	0	2443979..2445409	-	476	87200318	-	Saro_2304	-	aldehyde dehydrogenase
2293	 66.92	0	2445429..2446217	-	262	87200319	-	Saro_2305	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
2294	 68.84	+1	2446328..2447524	+	398	87200320	-	Saro_2306	-	Acetyl-CoA C-acetyltransferase
2295	 68.58	+1	2447597..2448118	-	173	87200321	-	Saro_2307	-	hypothetical protein
2296	 68.33	0	2448208..2449227	+	339	87200322	-	Saro_2308	-	glycolate reductase
2297	 67.35	0	2449396..2450709	+	437	87200323	-	Saro_2309	-	ammonium transporter
2298	 64.30	0	2450763..2451269	+	168	87200324	-	Saro_2310	-	hypothetical protein
2299	 64.15	0	2451614..2452210	+	198	87200325	-	Saro_2311	-	hypothetical protein
2300	 64.89	0	2452218..2453627	-	469	87200326	-	Saro_2312	-	2-nitropropane dioxygenase, NPD
2301	 66.40	0	2453627..2454385	-	252	87200327	-	Saro_2313	-	generic methyltransferase
2302	 66.22	0	2454382..2455509	-	375	87200328	-	Saro_2314	-	peptide chain release factor 2
2303	 65.23	0	2455619..2456173	-	184	87200329	-	Saro_2315	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2304	 65.96	0	2456270..2458804	-	844	87200330	-	Saro_2316	-	peptidoglycan glycosyltransferase
2305	 68.12	0	2458867..2459832	-	321	87200331	-	Saro_2317	-	N-acetylmuramoyl-L-alanine amidase
2306	 67.27	0	2460343..2463150	+	935	87200332	-	Saro_2318	-	ribonuclease E
2307	 66.35	0	2463215..2463847	-	210	87200333	-	Saro_2319	-	generic methyltransferase
2308	 66.49	0	2463922..2465049	-	375	87200334	-	Saro_2320	-	hypothetical protein
2309	 55.07	-2	2465491..2466180	+	229	87200335	-	Saro_2321	-	hypothetical protein
2310	 63.47	0	2466404..2467186	+	260	87200336	sdhB	Saro_2322	-	succinate dehydrogenase iron-sulfur subunit
2311	 69.89	+1	2467191..2467655	+	154	87200337	-	Saro_2323	-	phenylacetic acid degradation-related protein
2312	 66.75	0	2467652..2468785	+	377	87200338	-	Saro_2324	-	AFG1-like ATPase
2313	 49.79	-2	2468833..2469075	+	80	87200339	-	Saro_2325	-	hypothetical protein
2314	 59.13	-1	2469082..2471364	-	760	87200340	-	Saro_2326	-	diguanylate phosphodiesterase
2315	 67.88	0	2471447..2473336	-	629	87200341	-	Saro_2327	-	asparagine synthase, glutamine-hydrolyzing
2316	 68.64	+1	2473346..2474914	-	522	87200342	-	Saro_2328	-	hypothetical protein
2317	 71.29	+1	2474901..2476133	-	410	87200343	-	Saro_2329	-	glycosyl transferase, group 1
2318	 67.14	0	2476130..2477185	-	351	87200344	-	Saro_2330	-	hypothetical protein
2319	 66.78	0	2477182..2478063	-	293	87200345	-	Saro_2331	-	polysaccharide deacetylase
2320	 67.77	0	2478089..2479357	-	422	87200346	-	Saro_2332	-	ATPase
2321	 67.49	0	2479376..2481082	-	568	87200347	-	Saro_2333	-	hypothetical protein
2322	 69.27	+1	2481079..2481999	-	306	87200348	-	Saro_2334	-	putative exopolysaccharide biosynthesis protein
2323	 68.84	+1	2482011..2483528	-	505	87200349	-	Saro_2335	-	lipopolysaccharide biosynthesis
2324	 64.97	0	2483554..2484201	-	215	87200350	-	Saro_2336	-	polysaccharide export protein
2325	 65.61	0	2484413..2485639	-	408	87200351	-	Saro_2337	-	Orn/DAP/Arg decarboxylase 2
2326	 68.50	0	2485636..2487165	-	509	87200352	-	Saro_2338	-	AMP-dependent synthetase and ligase
2327	 66.87	0	2487195..2488199	+	334	87200353	-	Saro_2339	-	hypothetical protein
2328	 62.02	-1	2488259..2488516	+	85	87200354	-	Saro_2340	-	hypothetical protein
2329	 71.13	+1	2488513..2489184	+	223	87200355	-	Saro_2341	-	hypothetical protein
2330	 69.84	+1	2489181..2489969	+	262	87200356	-	Saro_2342	-	esterase/lipase/thioesterase family protein
2331	 66.15	0	2489959..2490927	-	322	87200357	-	Saro_2343	-	thioredoxin reductase
2332	 68.69	+1	2491066..2491854	-	262	87200358	-	Saro_2344	-	protein tyrosine/serine phosphatase
2333	 66.92	0	2491959..2492348	-	129	87200359	-	Saro_2345	-	response regulator receiver domain-containing protein
2334	 63.38	0	2492345..2493439	-	364	87200360	-	Saro_2346	-	hypothetical protein
2335	 64.14	0	2493513..2493947	-	144	87200361	-	Saro_2347	-	phenylacetic acid degradation-related protein
2336	 68.25	0	2493944..2495143	-	399	87200362	-	Saro_2348	-	peptidase M20D, amidohydrolase
2337	 66.59	0	2495287..2496534	+	415	87200363	-	Saro_2349	-	acetyl-CoA acetyltransferase
2338	 68.27	0	2496607..2497980	-	457	87200364	-	Saro_2350	-	peptidase M28
2339	 63.10	0	2498081..2499760	+	559	87200365	-	Saro_2351	-	putative ABC transporter ATP-binding protein
2340	 64.58	0	2499782..2500261	-	159	87200366	-	Saro_2352	-	hypothetical protein
2341	 68.18	0	2500513..2501571	+	352	87200367	-	Saro_2353	-	hypothetical protein
2342	 60.08	-1	2502186..2502959	+	257	87200368	-	Saro_2355	-	2OG-Fe(II) oxygenase
2343	 66.72	0	2502950..2504809	+	619	87200369	-	Saro_2356	-	hypothetical protein
2344	 65.69	0	2504873..2505280	+	135	87200370	-	Saro_2357	-	hypothetical protein
2345	 66.92	0	2505304..2505699	+	131	87200371	-	Saro_2358	-	hypothetical protein
2346	 64.57	0	2505703..2506848	+	381	87200372	-	Saro_2359	-	glutathionylspermidine synthase
2347	 62.87	0	2506853..2508457	-	534	87200373	lysK	Saro_2360	-	lysyl-tRNA synthetase
2348	 61.08	-1	2508639..2509622	-	327	87200374	-	Saro_2361	-	flagellin-like
2349	 68.14	0	2509800..2512523	+	907	87200375	-	Saro_2362	-	helicase c2
2350	 63.00	0	2512520..2513065	+	181	87200376	-	Saro_2363	-	putative phosphohistidine phosphatase, SixA
2351	 62.94	0	2513062..2513517	-	151	87200377	-	Saro_2364	-	MerR family transcriptional regulator
2352	 60.61	-1	2513528..2513824	-	98	87200378	-	Saro_2365	-	integration host factor, alpha subunit
2353	 64.83	0	2513945..2514922	-	325	87200379	-	Saro_2366	-	3-oxoacyl-[acyl-carrier-protein] synthase III
2354	 66.39	0	2514919..2516013	-	364	87200380	-	Saro_2367	-	putative glycerol-3-phosphate acyltransferase PlsX
2355	 63.33	0	2516040..2516219	-	59	87200381	rpmF	Saro_2368	-	50S ribosomal protein L32
2356	 64.89	0	2516463..2516855	+	130	87200382	-	Saro_2369	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
2357	 61.11	-1	2516920..2517657	-	245	87200383	-	Saro_2370	-	beta-lactamase-like
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.