IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
163	 62.85	0	160892..163015	-	707	87198189	-	Saro_0163	-	amino acid/peptide transporter
164	 64.36	0	163049..163438	+	129	87198190	-	Saro_0164	-	GntR family transcriptional regulator
165	 63.48	0	163591..163872	+	93	87198191	-	Saro_0165	-	histone-like DNA-binding protein
166	 63.62	0	164436..165092	+	218	87198192	-	Saro_0166	-	hypothetical protein
167	 64.49	0	165119..166585	-	488	87198193	-	Saro_0167	-	sulfotransferase
168	 62.23	0	166719..169919	-	1066	87198194	-	Saro_0168	-	TonB-dependent receptor
169	 68.07	0	170278..171132	-	284	87198195	-	Saro_0169	-	peptidase M23B
170	 63.73	0	171151..171354	-	67	87198196	-	Saro_0170	-	hypothetical protein
171	 70.19	+1	171381..172742	-	453	87198197	-	Saro_0171	-	exodeoxyribonuclease VII large subunit
172	 65.50	0	172861..174150	+	429	87198198	-	Saro_0172	-	phosphoribosylamine--glycine ligase
173	 65.08	0	174140..174769	-	209	87198199	-	Saro_0173	-	isochorismatase hydrolase
174	 65.75	0	174769..175971	-	400	87198200	-	Saro_0174	-	succinyl-CoA:(R)-citramalate CoA-transferase
175	 63.91	0	175968..177854	-	628	87198201	-	Saro_0175	-	5-oxoprolinase (ATP-hydrolyzing)
176	 66.18	0	177868..179916	-	682	87198202	-	Saro_0176	-	5-oxoprolinase (ATP-hydrolyzing)
177	 68.85	+1	179921..180835	-	304	87198203	-	Saro_0177	-	hydroxymethylglutaryl-CoA lyase
178	 63.58	0	181101..183626	+	841	87198204	-	Saro_0178	-	TonB-dependent receptor
179	 65.74	0	183684..184328	+	214	87198205	-	Saro_0179	-	GntR family transcriptional regulator
180	 61.48	-1	184339..184839	-	166	87198206	-	Saro_0180	-	hemerythrin HHE cation binding region protein
181	 67.04	0	184945..185745	+	266	87198207	-	Saro_0181	-	phosphoglycerate/bisphosphoglycerate mutase
182	 70.41	+1	185738..186619	+	293	87198208	-	Saro_0182	-	hypothetical protein
183	 65.63	0	186588..186974	-	128	87198209	-	Saro_0183	-	ferredoxin-like
184	 66.24	0	186971..189067	-	698	87198210	-	Saro_0184	-	peptidase S9, prolyl oligopeptidase active site region
185	 64.84	0	189125..189562	-	145	87198211	-	Saro_0185	-	hypothetical protein
186	 68.04	0	189604..191061	-	485	87198212	-	Saro_0186	-	Type I secretion outer membrane protein, TolC
187	 69.36	+1	191067..191660	-	197	87198213	-	Saro_0187	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
188	 65.03	0	191828..193351	+	507	87198214	-	Saro_0188	-	fumarase
189	 68.12	0	193439..195367	+	642	87198215	-	Saro_0189	-	histidine kinase internal region
190	 68.03	0	195378..196112	+	244	87198216	-	Saro_0190	-	LytR/AlgR family transcriptional regulator
191	 64.41	0	196166..197983	-	605	87198217	-	Saro_0191	-	AMP-dependent synthetase and ligase
192	 69.63	+1	198104..199855	-	583	87198218	-	Saro_0192	-	gamma-glutamyltransferase 1
193	 68.29	0	199866..200915	-	349	87198219	-	Saro_0193	-	dihydroorotate dehydrogenase 2
194	 69.61	+1	201349..201789	+	146	87198220	-	Saro_0194	-	BadM/Rrf2 family transcriptional regulator
195	 62.69	0	201786..203267	+	493	87198221	-	Saro_0195	-	cysteine desulfurase activator complex subunit SufB
196	 68.20	0	203407..203928	+	173	87198222	-	Saro_0196	-	hypothetical protein
197	 64.38	0	203940..204683	+	247	87198223	-	Saro_0197	-	FeS assembly ATPase SufC
198	 68.57	+1	204680..205414	+	244	87198224	-	Saro_0198	-	SufBD
199	 68.40	0	205411..206622	+	403	87198225	-	Saro_0199	-	SufS subfamily cysteine desulfurase
200	 64.18	0	206619..207101	+	160	87198226	-	Saro_0200	-	hypothetical protein
201	 65.29	0	207125..207487	+	120	87198227	-	Saro_0201	-	HesB/YadR/YfhF
202	 69.89	+1	208948..209598	-	216	87198228	-	Saro_0203	-	hypothetical protein
203	 65.76	0	209688..211682	-	664	87198229	-	Saro_0204	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
204	 66.78	0	212005..212925	+	306	87198230	-	Saro_0205	-	short-chain dehydrogenase/reductase SDR
205	 67.87	0	213013..213429	+	138	87198231	-	Saro_0206	-	hypothetical protein
206	 63.54	0	213426..213617	+	63	87198232	-	Saro_0207	-	XRE family transcriptional regulator
207	 69.08	+1	213651..214397	+	248	87198233	-	Saro_0208	-	alpha/beta hydrolase
208	 68.91	+1	214390..215325	+	311	87198234	-	Saro_0209	-	tetratricopeptide TPR_4
209	 67.98	0	215322..216314	+	330	87198235	-	Saro_0210	-	luciferase-like
210	 68.74	+1	216557..221278	+	1573	87198236	-	Saro_0211	-	glutamate dehydrogenase (NAD)
211	 72.27	+2	221359..222126	+	255	87198237	-	Saro_0212	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
212	 70.28	+1	222107..222826	+	239	87198238	-	Saro_0213	-	molybdate ABC transporter permease
213	 70.61	+1	222816..223424	+	202	87198239	-	Saro_0214	-	ABC transporter related
214	 66.98	0	223426..224685	-	419	87198240	-	Saro_0215	-	6-aminohexanoate-dimer hydrolase
215	 67.07	0	224840..226087	+	415	87198241	-	Saro_0216	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
216	 68.95	+1	226099..227148	-	349	87198242	-	Saro_0217	-	4Fe-4S ferredoxin, iron-sulfur binding
217	 68.18	0	227195..228184	+	329	87198243	-	Saro_0218	-	ABC transporter related
218	 67.31	0	228181..229425	+	414	87198244	-	Saro_0219	-	ABC-type Na+ efflux pump permease component-like
219	 64.80	0	229503..230840	+	445	87198245	-	Saro_0220	-	cytochrome P450
220	 69.31	+1	230975..231466	+	163	87198246	-	Saro_0221	-	protein-methionine-S-oxide reductase
221	 61.40	-1	231568..231852	-	94	87198247	rpmB	Saro_0222	-	50S ribosomal protein L28
222	 72.37	+2	231976..232431	+	151	87198248	-	Saro_0223	-	tRNA-adenosine deaminase
223	 70.51	+1	232442..233143	-	233	87198249	-	Saro_0224	-	ribonuclease T2
224	 65.01	0	233145..233567	-	140	87198250	-	Saro_0225	-	hypothetical protein
225	 69.09	+1	233605..234471	-	288	87198251	-	Saro_0226	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
226	 63.53	0	234587..235384	-	265	87198252	-	Saro_0227	-	LytR/AlgR family transcriptional regulator
227	 63.70	0	235497..236642	-	381	87198253	-	Saro_0228	-	histidine kinase internal region
228	 70.05	+1	236715..237512	-	265	87198254	-	Saro_0229	-	DSBA oxidoreductase
229	 67.32	0	237523..238908	-	461	87198255	-	Saro_0230	-	peptidase M48, Ste24p
230	 69.84	+1	238919..239863	-	314	87198256	-	Saro_0231	-	esterase/lipase/thioesterase
231	 68.37	0	239934..241280	-	448	87198257	-	Saro_0232	-	hypothetical protein
232	 69.21	+1	241371..242273	-	300	87198258	-	Saro_0233	-	HpcH/HpaI aldolase
233	 67.78	0	242270..243529	-	419	87198259	-	Saro_0234	-	protein of unknown function DUF894, DitE
234	 64.61	0	243529..243966	-	145	87198260	-	Saro_0235	-	hypothetical protein
235	 66.24	0	243963..244673	-	236	87198261	-	Saro_0236	-	C-5 sterol desaturase
236	 69.87	+1	244870..246366	-	498	87198262	-	Saro_0237	-	DEAD/DEAH box helicase-like
237	 66.90	0	246695..248005	+	436	87198263	-	Saro_0238	-	peptidase M20
238	 68.25	0	248002..248190	+	62	87198264	-	Saro_0239	-	hypothetical protein
239	 70.14	+1	248163..249485	-	440	87198265	-	Saro_0240	-	hypothetical protein
240	 65.45	0	249771..250346	+	191	87198266	-	Saro_0241	-	hypothetical protein
241	 67.06	0	250407..250910	+	167	87198267	-	Saro_0242	-	hypothetical protein
242	 68.51	0	250928..251362	-	144	87198268	-	Saro_0243	-	hypothetical protein
243	 68.13	0	251857..253635	+	592	87198269	-	Saro_0244	-	Type I secretion system ATPase, PrtD
244	 67.19	0	253632..254972	+	446	87198270	-	Saro_0245	-	Type I secretion membrane fusion protein, HlyD
245	 69.20	+1	254975..256591	+	538	87198271	-	Saro_0246	-	Type I secretion outer membrane protein, TolC
246	 66.46	0	256820..257794	+	324	87198272	-	Saro_0247	-	bile acid:sodium symporter
247	 65.79	0	257827..259188	-	453	87198273	-	Saro_0248	-	aminotransferase
248	 62.34	0	259175..259891	-	238	87198274	-	Saro_0249	-	TetR family transcriptional regulator
249	 63.83	0	260029..262320	+	763	87198275	-	Saro_0250	-	TonB-dependent receptor
250	 66.49	0	262402..264123	+	573	87198276	-	Saro_0251	-	flavin-containing monooxygenase FMO
251	 66.31	0	264168..265013	-	281	87198277	-	Saro_0252	-	short-chain dehydrogenase/reductase SDR
252	 70.87	+1	265107..266273	-	388	87198278	-	Saro_0253	-	hypothetical protein
253	 65.47	0	266331..267662	-	443	87198279	-	Saro_0254	-	FAD dependent oxidoreductase
254	 57.77	-2	268306..269598	+	430	87198280	-	Saro_0255	-	phage integrase
255	 55.67	-2	269577..269876	-	99	87198281	-	Saro_0256	-	hypothetical protein
256	 61.60	-1	270703..271512	-	269	87198282	-	Saro_0257	-	hypothetical protein
257	 56.04	-2	271746..272366	-	206	87198283	-	Saro_0258	-	hypothetical protein
258	 60.76	-1	272477..273949	+	490	87198284	-	Saro_0259	-	ADP-ribosyl-(dinitrogen reductase) hydrolase
259	 58.33	-2	274181..276076	+	631	87198285	-	Saro_0260	-	protein of unknown function DUF1524 RloF
260	 56.08	-2	276073..278802	+	909	87198286	-	Saro_0261	-	type II restriction enzyme, methylase subunit
261	 59.07	-1	278799..279641	+	280	87198287	-	Saro_0262	-	hypothetical protein
262	 54.37	-2	279989..281029	+	346	87198288	-	Saro_0263	-	hypothetical protein
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.