IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2018	 70.40	+1	2161451..2162656	+	401	87200044	-	Saro_2028	-	molybdopterin molybdochelatase
2019	 65.82	0	2162774..2163478	+	234	87200045	-	Saro_2029	-	LexA repressor
2020	 67.28	0	2163622..2165904	-	760	87200046	-	Saro_2030	-	ComEC/Rec2-related protein
2021	 65.30	0	2165934..2167397	+	487	87200047	-	Saro_2031	-	glutamyl-tRNA synthetase
2022	 62.86	0	2167442..2168728	+	428	87200048	-	Saro_2032	-	citrate synthase
2023	 67.74	0	2168860..2169045	+	61	87200049	-	Saro_2033	-	hypothetical protein
2024	 68.70	+1	2169049..2170425	-	458	87200050	-	Saro_2034	-	histidine kinase
2025	 66.67	0	2170427..2171383	-	318	87200051	-	Saro_2035	-	hypothetical protein
2026	 68.84	+1	2171393..2172637	-	414	87200052	-	Saro_2036	-	hypothetical protein
2027	 64.00	0	2172713..2173012	-	99	87200053	-	Saro_2037	-	hypothetical protein
2028	 66.32	0	2173084..2175678	+	864	87200054	-	Saro_2038	-	hypothetical protein
2029	 64.64	0	2175675..2177105	-	476	87200055	-	Saro_2039	-	uracil-DNA glycosylase superfamily protein
2030	 64.53	0	2177102..2178367	-	421	87200056	-	Saro_2040	-	radical SAM family protein
2031	 61.59	-1	2178644..2179135	+	163	87200057	-	Saro_2041	-	general stress protein
2032	 64.20	0	2179236..2180813	-	525	87200058	-	Saro_2042	-	phospholipid binding protein
2033	 65.98	0	2181011..2181880	+	289	87200059	-	Saro_2043	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2034	 62.36	0	2181960..2183027	+	355	87200060	-	Saro_2044	-	hypothetical protein
2035	 67.32	0	2183030..2184097	-	355	87200061	-	Saro_2045	-	L-carnitine dehydratase/bile acid-inducible protein F
2036	 67.50	0	2184172..2185611	-	479	87200062	-	Saro_2046	-	TPR repeat-containing protein
2037	 64.20	0	2185739..2187115	-	458	87200063	-	Saro_2047	-	two component, sigma54 specific, Fis family transcriptional regulator
2038	 65.54	0	2187115..2189250	-	711	87200064	-	Saro_2048	-	multi-sensor signal transduction histidine kinase
2039	 63.46	0	2189261..2190664	-	467	87200065	-	Saro_2049	-	sugar transferase
2040	 66.67	0	2190847..2191128	-	93	87200066	-	Saro_2050	-	hypothetical protein
2041	 66.58	0	2191236..2193557	+	773	87200067	-	Saro_2051	-	hypothetical protein
2042	 66.84	0	2193628..2194191	+	187	87200068	-	Saro_2052	-	cytochrome B561
2043	 66.31	0	2194213..2195349	-	378	87200069	-	Saro_2053	-	chaperone DnaJ
2044	 63.78	0	2195435..2197342	-	635	87200070	-	Saro_2054	-	chaperone DnaK
2045	 64.10	0	2197510..2198055	+	181	87200071	-	Saro_2055	-	hypothetical protein
2046	 66.86	0	2198052..2198576	+	174	87200072	-	Saro_2056	-	hypothetical protein
2047	 70.16	+1	2198561..2198818	-	85	87200073	-	Saro_2057	-	hypothetical protein
2048	 66.67	0	2198985..2199662	+	225	87200074	-	Saro_2058	-	isochorismatase hydrolase
2049	 65.60	0	2199768..2200328	-	186	87200075	-	Saro_2059	-	GrpE protein
2050	 67.70	0	2200325..2201389	-	354	87200076	hrcA	Saro_2060	-	heat-inducible transcription repressor
2051	 66.67	0	2201499..2202182	+	227	87200077	-	Saro_2061	-	ribonuclease PH
2052	 66.67	0	2202182..2202811	+	209	87200078	-	Saro_2062	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2053	 65.19	0	2202886..2204040	+	384	87200079	-	Saro_2063	-	coproporphyrinogen III oxidase
2054	 72.60	+2	2204037..2204930	+	297	87200080	-	Saro_2064	-	phage integrase
2055	 67.31	0	2204941..2206344	-	467	87200081	-	Saro_2065	-	periplasmic sensor signal transduction histidine kinase
2056	 62.68	0	2206348..2207025	-	225	87200082	-	Saro_2066	-	two component transcriptional regulator
2057	 67.00	0	2207142..2207441	-	99	87200083	-	Saro_2067	-	hypothetical protein
2058	 66.78	0	2207602..2209398	+	598	87200084	-	Saro_2068	-	ABC transporter related
2059	 70.89	+1	2209399..2209872	-	157	87200085	-	Saro_2069	-	hypothetical protein
2060	 68.06	0	2209989..2210561	+	190	87200086	-	Saro_2070	-	XRE family transcriptional regulator
2061	 70.07	+1	2210563..2211738	+	391	87200087	-	Saro_2071	-	glycosyl transferase, group 1
2062	 62.99	0	2211779..2212756	-	325	87200088	-	Saro_2072	-	protein translocase subunit secF
2063	 65.61	0	2212771..2214378	-	535	87200089	secD	Saro_2073	-	preprotein translocase subunit SecD
2064	 64.55	0	2214406..2214735	-	109	87200090	-	Saro_2074	-	protein translocase subunit yajC
2065	 64.25	0	2215158..2215571	+	137	87200091	-	Saro_2075	-	hypothetical protein
2066	 66.67	0	2215628..2216014	+	128	87200092	-	Saro_2076	-	hypothetical protein
2067	 64.90	0	2216103..2216555	+	150	87200093	-	Saro_2077	-	3-dehydroquinate dehydratase
2068	 67.48	0	2216655..2217143	+	162	87200094	-	Saro_2078	-	biotin carboxyl carrier protein
2069	 64.51	0	2217156..2218502	+	448	87200095	-	Saro_2079	-	biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
2070	 64.00	0	2218570..2219169	-	199	87200096	-	Saro_2080	-	hypothetical protein
2071	 64.66	0	2219246..2220193	-	315	87200097	-	Saro_2081	-	glutathione synthetase
2072	 64.25	0	2220307..2220513	+	68	87200098	-	Saro_2082	-	hypothetical protein
2073	 72.38	+2	2220539..2220853	-	104	87200099	-	Saro_2083	-	hypothetical protein
2074	 68.22	0	2220892..2221728	-	278	87200100	-	Saro_2084	-	hypothetical protein
2075	 69.19	+1	2221892..2222962	+	356	87200101	-	Saro_2085	-	extracellular ligand-binding receptor
2076	 66.02	0	2223045..2225045	+	666	87200102	-	Saro_2086	-	DNA topoisomerase IV subunit B
2077	 53.95	-2	2225196..2225486	-	96	87200103	-	Saro_2087	-	plasmid stabilization system protein
2078	 62.40	0	2225476..2225733	-	85	87200104	-	Saro_2088	-	transcriptional regulator
2079	 66.67	0	2225765..2226544	-	259	87200105	-	Saro_2089	-	hypothetical protein
2080	 62.29	0	2226779..2227624	+	281	87200106	-	Saro_2090	-	ATPase AAA_5
2081	 61.89	-1	2227684..2228457	-	257	87200107	-	Saro_2091	-	glutathione S-transferase-like
2082	 68.24	0	2228499..2228942	+	147	87200108	-	Saro_2092	-	glutathione-dependent formaldehyde-activating, GFA
2083	 62.69	0	2228948..2230129	+	393	87200109	-	Saro_2093	-	hypothetical protein
2084	 69.90	+1	2230227..2231000	+	257	87200110	-	Saro_2094	-	enoyl-CoA hydratase
2085	 47.35	-2	2231475..2232230	+	251	87200111	-	Saro_2095	-	hypothetical protein
2086	 68.75	+1	2232472..2233047	+	191	87200112	-	Saro_2096	-	twin-arginine translocation pathway signal
2087	 68.47	0	2233152..2234426	+	424	87200113	-	Saro_2097	-	general substrate transporter
2088	 68.50	0	2234649..2235851	-	400	87200114	-	Saro_2098	-	hypothetical protein
2089	 70.53	+1	2235848..2236390	-	180	87200115	-	Saro_2099	-	hypothetical protein
2090	 65.12	0	2236438..2237667	+	409	87200116	-	Saro_2100	-	tyrosyl-tRNA synthetase
2091	 65.78	0	2237799..2238137	+	112	87200117	-	Saro_2101	-	hypothetical protein
2092	 67.29	0	2238258..2239541	+	427	87200118	-	Saro_2102	-	major facilitator transporter
2093	 65.90	0	2239574..2240491	+	305	87200119	-	Saro_2103	-	cysteine synthase
2094	 69.79	+1	2240497..2241201	+	234	87200120	-	Saro_2104	-	dienelactone hydrolase
2095	 66.50	0	2241329..2243131	-	600	87200121	-	Saro_2105	-	acyl-CoA dehydrogenase-like
2096	 64.76	0	2243137..2243607	-	156	87200122	-	Saro_2106	-	MerR family transcriptional regulator
2097	 64.29	0	2243640..2243975	-	111	87200123	-	Saro_2107	-	phosphoribosyl-AMP cyclohydrolase
2098	 69.14	+1	2244411..2245220	-	269	87200124	-	Saro_2108	-	phosphoribosyltransferase
2099	 70.08	+1	2245284..2246075	+	263	87200125	-	Saro_2109	-	hypothetical protein
2100	 66.89	0	2246098..2248761	-	887	87200126	-	Saro_2110	-	pyruvate phosphate dikinase
2101	 64.73	0	2248829..2251045	-	738	87200127	-	Saro_2111	-	glycine--tRNA ligase
2102	 63.30	0	2251230..2252180	-	316	87200128	glyQ	Saro_2112	-	glycyl-tRNA synthetase subunit alpha
2103	 66.67	0	2252270..2253178	+	302	87200129	-	Saro_2113	-	GumN
2104	 70.32	+1	2253175..2254077	+	300	87200130	-	Saro_2114	-	GumN
2105	 64.23	0	2254216..2254830	+	204	87200131	-	Saro_2115	-	50S ribosomal protein L25/general stress protein Ctc
2106	 60.94	-1	2254975..2255550	+	191	87200132	-	Saro_2116	-	peptidyl-tRNA hydrolase
2107	 70.05	+1	2255695..2256108	+	137	87200133	-	Saro_2117	-	hypothetical protein
2108	 70.63	+1	2256144..2257658	-	504	87200134	-	Saro_2118	-	TPR repeat-containing protein
2109	 66.53	0	2257832..2258548	+	238	87200135	-	Saro_2119	-	hypothetical protein
2110	 69.24	+1	2258634..2260151	-	505	87200136	-	Saro_2120	-	TPR repeat-containing protein
2111	 64.12	0	2260265..2261365	+	366	87200137	-	Saro_2121	-	translation-associated GTPase
2112	 67.93	0	2261421..2261816	-	131	87200138	-	Saro_2122	-	MerR family transcriptional regulator
2113	 64.16	0	2261861..2262658	+	265	87200139	-	Saro_2123	-	glutaredoxin
2114	 66.92	0	2262722..2263513	+	263	87200140	-	Saro_2124	-	hypothetical protein
2115	 60.78	-1	2263557..2264015	+	152	87200141	-	Saro_2125	-	MaoC-like dehydratase
2116	 65.46	0	2264090..2264587	-	165	87200142	-	Saro_2126	-	hypothetical protein
2117	 68.43	0	2264590..2266401	-	603	87200143	-	Saro_2127	-	DNA mismatch repair protein MutL
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.