IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1941	 63.50	0	2068026..2069573	-	515	87199967	-	Saro_1950	-	prolyl-tRNA synthetase
1942	 59.65	-1	2069644..2070213	-	189	87199968	-	Saro_1951	-	polyhydroxyalkanoate synthesis repressor PhaR
1943	 64.80	0	2070281..2071351	-	356	87199969	-	Saro_1952	-	alanine racemase
1944	 62.63	0	2071344..2072978	-	544	87199970	-	Saro_1953	-	general substrate transporter
1945	 66.90	0	2073050..2073481	-	143	87199971	-	Saro_1954	-	hypothetical protein
1946	 63.06	0	2073483..2074037	-	184	87199972	-	Saro_1955	-	colicin V production protein
1947	 65.06	0	2074050..2075417	-	455	87199973	-	Saro_1956	-	DNA repair protein RadA
1948	 65.94	0	2075694..2076518	-	274	87199974	-	Saro_1957	-	inositol-1(or 4)-monophosphatase
1949	 60.46	-1	2076522..2077085	-	187	87199975	-	Saro_1958	-	elongation factor P
1950	 63.85	0	2077196..2077585	+	129	87199976	-	Saro_1959	-	hypothetical protein
1951	 63.59	0	2077582..2079534	-	650	87199977	-	Saro_1960	-	oligopeptide transporter OPT
1952	 63.95	0	2079602..2080741	-	379	87199978	-	Saro_1961	-	ErfK/YbiS/YcfS/YnhG
1953	 61.53	-1	2080800..2081441	-	213	87199979	-	Saro_1962	-	thiamine-phosphate pyrophosphorylase
1954	 62.30	0	2081521..2081886	+	121	87199980	-	Saro_1963	-	hypothetical protein
1955	 61.70	-1	2081972..2082877	-	301	87199981	-	Saro_1964	-	fructose-1,6-bisphosphate aldolase
1956	 64.14	0	2083063..2084250	-	395	87199982	pgk	Saro_1965	-	phosphoglycerate kinase
1957	 65.39	0	2084247..2084717	-	156	87199983	-	Saro_1966	-	hypothetical protein
1958	 62.50	0	2084730..2085737	-	335	87199984	-	Saro_1967	-	glyceraldehyde-3-phosphate dehydrogenase
1959	 63.97	0	2085758..2087725	-	655	87199985	-	Saro_1968	-	transketolase
1960	 62.62	0	2087722..2088042	-	106	87199986	-	Saro_1969	-	hypothetical protein
1961	 63.42	0	2088167..2088505	+	112	87199987	-	Saro_1970	-	hypothetical protein
1962	 66.16	0	2088711..2089298	+	195	87199988	-	Saro_1971	-	5-formyltetrahydrofolate cyclo-ligase
1963	 64.38	0	2089295..2089513	+	72	87199989	-	Saro_1972	-	hypothetical protein
1964	 63.35	0	2090151..2090723	-	190	87199990	-	Saro_1973	-	hypothetical protein
1965	 65.18	0	2090753..2092093	-	446	87199991	-	Saro_1974	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1966	 61.36	-1	2092097..2093152	-	351	87199992	-	Saro_1975	-	branched-chain alpha-keto acid dehydrogenase E1 component
1967	 64.08	0	2093149..2094423	-	424	87199993	-	Saro_1976	-	branched-chain alpha-keto acid dehydrogenase E1 component
1968	 61.72	-1	2094575..2095525	-	316	87199994	-	Saro_1977	-	thymidylate synthase
1969	 64.54	0	2095976..2096539	+	187	87199995	-	Saro_1978	-	hypothetical protein
1970	 65.16	0	2096600..2098657	-	685	87199996	-	Saro_1979	-	DEAD/DEAH box helicase-like
1971	 60.99	-1	2098850..2099254	+	134	87199997	-	Saro_1980	-	AtsE
1972	 63.12	0	2099370..2099651	+	93	87199998	-	Saro_1981	-	hypothetical protein
1973	 65.52	0	2099682..2103176	+	1164	87199999	-	Saro_1982	-	transcription-repair coupling factor
1974	 65.82	0	2103173..2104465	-	430	87200000	-	Saro_1983	-	diguanylate cyclase/phosphodiesterase
1975	 63.61	0	2104598..2105383	+	261	87200001	ppnK	Saro_1984	-	inorganic polyphosphate/ATP-NAD kinase
1976	 61.58	-1	2105847..2106023	+	58	87200002	-	Saro_1985	-	hypothetical protein
1977	 66.10	0	2106023..2106556	+	177	87200003	-	Saro_1986	-	hypothetical protein
1978	 65.96	0	2106466..2109585	-	1039	87200004	-	Saro_1987	-	hypothetical protein
1979	 66.92	0	2109582..2117429	-	2615	87200005	-	Saro_1988	-	hypothetical protein
1980	 65.82	0	2117429..2119192	-	587	87200006	-	Saro_1989	-	hemolysin activation/secretion protein-like
1981	 63.08	0	2119388..2122123	-	911	87200007	-	Saro_1990	-	preprotein translocase subunit SecA
1982	 70.10	+1	2122230..2122520	-	96	87200008	-	Saro_1991	-	hypothetical protein
1983	 66.67	0	2123244..2124470	+	408	87200009	argJ	Saro_1993	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1984	 63.70	0	2124484..2125089	+	201	87200010	-	Saro_1994	-	glutathione S-transferase-like
1985	 66.91	0	2125098..2125907	+	269	87200011	-	Saro_1995	-	inositol monophosphatase
1986	 63.86	0	2125964..2126284	-	106	87200012	-	Saro_1996	-	thioredoxin
1987	 67.47	0	2126345..2129830	-	1161	87200013	-	Saro_1997	-	UvrD/REP helicase
1988	 70.22	+1	2129827..2132808	-	993	87200014	-	Saro_1998	-	helicase
1989	 66.25	0	2132808..2133530	-	240	87200015	-	Saro_1999	-	nucleotidyl transferase
1990	 66.87	0	2133527..2134510	-	327	87200016	-	Saro_2000	-	aminoglycoside phosphotransferase
1991	 68.67	+1	2134501..2134950	-	149	87200017	-	Saro_2001	-	hypothetical protein
1992	 68.71	+1	2134947..2137295	-	782	87200018	-	Saro_2002	-	PAS/PAC sensor signal transduction histidine kinase
1993	 62.69	0	2137479..2138885	-	468	87200019	-	Saro_2003	-	S-adenosyl-L-homocysteine hydrolase
1994	 64.38	0	2139107..2139586	+	159	87200020	-	Saro_2004	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1995	 67.06	0	2139629..2140384	-	251	87200021	-	Saro_2005	-	hypothetical protein
1996	 67.32	0	2140389..2140850	-	153	87200022	-	Saro_2006	-	hypothetical protein
1997	 65.85	0	2140974..2141588	-	204	87200023	-	Saro_2007	-	GTP cyclohydrolase
1998	 64.82	0	2141605..2143119	-	504	87200024	-	Saro_2008	-	phospholipase D/transphosphatidylase
1999	 64.45	0	2143262..2144029	+	255	87200025	-	Saro_2009	-	hypothetical protein
2000	 66.02	0	2144010..2144318	-	102	87200026	-	Saro_2010	-	septum formation initiator
2001	 66.04	0	2144540..2145019	-	159	87200027	-	Saro_2011	-	hypothetical protein
2002	 67.26	0	2145016..2145861	-	281	87200028	-	Saro_2012	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2003	 62.17	0	2145858..2146124	-	88	87200029	-	Saro_2013	-	glutaredoxin GrxC
2004	 65.15	0	2146285..2146746	+	153	87200030	-	Saro_2014	-	heat shock protein Hsp20
2005	 68.44	0	2146923..2148500	+	525	87200031	-	Saro_2015	-	ABC transporter related
2006	 67.10	0	2148509..2149198	-	229	87200032	-	Saro_2016	-	Crp/FNR family transcriptional regulator
2007	 65.38	0	2149283..2150914	-	543	87200033	-	Saro_2017	-	CTP synthetase
2008	 68.94	+1	2151067..2151462	-	131	87200034	-	Saro_2018	-	protein translocase subunit secG
2009	 69.26	+1	2151568..2152338	-	256	87200035	-	Saro_2019	-	triosephosphate isomerase
2010	 68.42	0	2152601..2154541	+	646	87200036	-	Saro_2020	-	hypothetical protein
2011	 68.82	+1	2154555..2156090	+	511	87200037	-	Saro_2021	-	anthranilate synthase, component I
2012	 65.48	0	2156087..2156674	+	195	87200038	-	Saro_2022	-	anthranilate synthase, component II
2013	 69.49	+1	2156671..2157663	+	330	87200039	-	Saro_2023	-	anthranilate phosphoribosyltransferase
2014	 66.03	0	2157759..2158547	+	262	87200040	-	Saro_2024	-	indole-3-glycerol-phosphate synthase
2015	 66.58	0	2158544..2159749	-	401	87200041	-	Saro_2025	-	beta-lactamase
2016	 58.67	-2	2159925..2160737	-	270	87200042	-	Saro_2026	-	hypothetical protein
2017	 67.72	0	2160981..2161454	+	157	87200043	-	Saro_2027	-	GTP cyclohydrolase subunit MoaC
2018	 70.40	+1	2161451..2162656	+	401	87200044	-	Saro_2028	-	molybdopterin molybdochelatase
2019	 65.82	0	2162774..2163478	+	234	87200045	-	Saro_2029	-	LexA repressor
2020	 67.28	0	2163622..2165904	-	760	87200046	-	Saro_2030	-	ComEC/Rec2-related protein
2021	 65.30	0	2165934..2167397	+	487	87200047	-	Saro_2031	-	glutamyl-tRNA synthetase
2022	 62.86	0	2167442..2168728	+	428	87200048	-	Saro_2032	-	citrate synthase
2023	 67.74	0	2168860..2169045	+	61	87200049	-	Saro_2033	-	hypothetical protein
2024	 68.70	+1	2169049..2170425	-	458	87200050	-	Saro_2034	-	histidine kinase
2025	 66.67	0	2170427..2171383	-	318	87200051	-	Saro_2035	-	hypothetical protein
2026	 68.84	+1	2171393..2172637	-	414	87200052	-	Saro_2036	-	hypothetical protein
2027	 64.00	0	2172713..2173012	-	99	87200053	-	Saro_2037	-	hypothetical protein
2028	 66.32	0	2173084..2175678	+	864	87200054	-	Saro_2038	-	hypothetical protein
2029	 64.64	0	2175675..2177105	-	476	87200055	-	Saro_2039	-	uracil-DNA glycosylase superfamily protein
2030	 64.53	0	2177102..2178367	-	421	87200056	-	Saro_2040	-	radical SAM family protein
2031	 61.59	-1	2178644..2179135	+	163	87200057	-	Saro_2041	-	general stress protein
2032	 64.20	0	2179236..2180813	-	525	87200058	-	Saro_2042	-	phospholipid binding protein
2033	 65.98	0	2181011..2181880	+	289	87200059	-	Saro_2043	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2034	 62.36	0	2181960..2183027	+	355	87200060	-	Saro_2044	-	hypothetical protein
2035	 67.32	0	2183030..2184097	-	355	87200061	-	Saro_2045	-	L-carnitine dehydratase/bile acid-inducible protein F
2036	 67.50	0	2184172..2185611	-	479	87200062	-	Saro_2046	-	TPR repeat-containing protein
2037	 64.20	0	2185739..2187115	-	458	87200063	-	Saro_2047	-	two component, sigma54 specific, Fis family transcriptional regulator
2038	 65.54	0	2187115..2189250	-	711	87200064	-	Saro_2048	-	multi-sensor signal transduction histidine kinase
2039	 63.46	0	2189261..2190664	-	467	87200065	-	Saro_2049	-	sugar transferase
2040	 66.67	0	2190847..2191128	-	93	87200066	-	Saro_2050	-	hypothetical protein
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.