version 1.0
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1910 64.59 0 2032081..2033382 + 433 87199936 - Saro_1919 - hypothetical protein 1911 64.59 0 2033469..2034143 - 224 87199937 - Saro_1920 - carbonate dehydratase 1912 63.99 0 2034189..2035121 + 310 87199938 - Saro_1921 - lipoyl synthase 1913 64.50 0 2035124..2035585 + 153 87199939 - Saro_1922 - cyclase/dehydrase 1914 63.89 0 2035546..2036049 - 167 87199940 - Saro_1923 - CinA-like 1915 64.39 0 2036054..2036623 - 189 87199941 - Saro_1924 - hypothetical protein 1916 64.60 0 2036643..2037803 - 386 87199942 ispDF Saro_1925 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1917 63.83 0 2037905..2038960 + 351 87199943 - Saro_1926 - dihydrouridine synthase TIM-barrel protein nifR3 1918 63.81 0 2038957..2040078 + 373 87199944 - Saro_1927 - signal transduction histidine kinase, nitrogen specific, NtrB 1919 60.95 -1 2040075..2041508 + 477 87199945 - Saro_1928 - two component, sigma54 specific, Fis family transcriptional regulator 1920 63.17 0 2041595..2043823 + 742 87199946 - Saro_1929 - periplasmic sensor signal transduction histidine kinase 1921 63.85 0 2043837..2045222 + 461 87199947 - Saro_1930 - two component, sigma54 specific, Fis family transcriptional regulator 1922 60.31 -1 2045402..2045983 + 193 87199948 hfq Saro_1931 - RNA-binding protein Hfq 1923 63.39 0 2046049..2047329 + 426 87199949 - Saro_1932 - small GTP-binding protein domain-containing protein 1924 61.70 -1 2047316..2048140 - 274 87199950 - Saro_1933 - MazG family protein 1925 61.78 -1 2048323..2049489 + 388 87199951 - Saro_1934 - phage integrase 1926 62.87 0 2049480..2051612 + 710 87199952 - Saro_1935 - phage integrase 1927 63.54 0 2051609..2052088 + 159 87199953 - Saro_1936 - hypothetical protein 1928 61.46 -1 2052456..2053223 - 255 87199954 - Saro_1937 - beta-lactamase-like 1929 61.03 -1 2053220..2053999 - 259 87199955 - Saro_1938 - TatD-related deoxyribonuclease 1930 58.75 -2 2053996..2055561 - 521 87199956 - Saro_1939 - methionyl-tRNA synthetase 1931 66.46 0 2055596..2056552 - 318 87199957 - Saro_1940 - DNA polymerase III, delta prime subunit 1932 67.14 0 2056549..2057178 - 209 87199958 - Saro_1941 - thymidylate kinase 1933 63.10 0 2057175..2058350 - 391 87199959 - Saro_1942 - Serine-type D-Ala-D-Ala carboxypeptidase 1934 66.01 0 2058390..2059301 - 303 87199960 - Saro_1943 - sporulation related protein 1935 63.33 0 2059285..2060304 - 339 87199961 - Saro_1944 - lytic murein transglycosylase 1936 62.35 0 2060883..2062295 - 470 87199962 - Saro_1945 - dihydrolipoamide dehydrogenase 1937 64.80 0 2062376..2063659 - 427 87199963 - Saro_1946 - dihydrolipoamide acetyltransferase, long form 1938 65.58 0 2063832..2064290 + 152 87199964 - Saro_1947 - hypothetical protein 1939 64.91 0 2064303..2066582 - 759 87199965 - Saro_1948 - ribonuclease R 1940 65.00 0 2066623..2067942 - 439 87199966 - Saro_1949 - peptidase M28 1941 63.50 0 2068026..2069573 - 515 87199967 - Saro_1950 - prolyl-tRNA synthetase 1942 59.65 -1 2069644..2070213 - 189 87199968 - Saro_1951 - polyhydroxyalkanoate synthesis repressor PhaR 1943 64.80 0 2070281..2071351 - 356 87199969 - Saro_1952 - alanine racemase 1944 62.63 0 2071344..2072978 - 544 87199970 - Saro_1953 - general substrate transporter 1945 66.90 0 2073050..2073481 - 143 87199971 - Saro_1954 - hypothetical protein 1946 63.06 0 2073483..2074037 - 184 87199972 - Saro_1955 - colicin V production protein 1947 65.06 0 2074050..2075417 - 455 87199973 - Saro_1956 - DNA repair protein RadA 1948 65.94 0 2075694..2076518 - 274 87199974 - Saro_1957 - inositol-1(or 4)-monophosphatase 1949 60.46 -1 2076522..2077085 - 187 87199975 - Saro_1958 - elongation factor P 1950 63.85 0 2077196..2077585 + 129 87199976 - Saro_1959 - hypothetical protein 1951 63.59 0 2077582..2079534 - 650 87199977 - Saro_1960 - oligopeptide transporter OPT 1952 63.95 0 2079602..2080741 - 379 87199978 - Saro_1961 - ErfK/YbiS/YcfS/YnhG 1953 61.53 -1 2080800..2081441 - 213 87199979 - Saro_1962 - thiamine-phosphate pyrophosphorylase 1954 62.30 0 2081521..2081886 + 121 87199980 - Saro_1963 - hypothetical protein 1955 61.70 -1 2081972..2082877 - 301 87199981 - Saro_1964 - fructose-1,6-bisphosphate aldolase 1956 64.14 0 2083063..2084250 - 395 87199982 pgk Saro_1965 - phosphoglycerate kinase 1957 65.39 0 2084247..2084717 - 156 87199983 - Saro_1966 - hypothetical protein 1958 62.50 0 2084730..2085737 - 335 87199984 - Saro_1967 - glyceraldehyde-3-phosphate dehydrogenase 1959 63.97 0 2085758..2087725 - 655 87199985 - Saro_1968 - transketolase 1960 62.62 0 2087722..2088042 - 106 87199986 - Saro_1969 - hypothetical protein 1961 63.42 0 2088167..2088505 + 112 87199987 - Saro_1970 - hypothetical protein 1962 66.16 0 2088711..2089298 + 195 87199988 - Saro_1971 - 5-formyltetrahydrofolate cyclo-ligase 1963 64.38 0 2089295..2089513 + 72 87199989 - Saro_1972 - hypothetical protein 1964 63.35 0 2090151..2090723 - 190 87199990 - Saro_1973 - hypothetical protein 1965 65.18 0 2090753..2092093 - 446 87199991 - Saro_1974 - branched-chain alpha-keto acid dehydrogenase subunit E2 1966 61.36 -1 2092097..2093152 - 351 87199992 - Saro_1975 - branched-chain alpha-keto acid dehydrogenase E1 component 1967 64.08 0 2093149..2094423 - 424 87199993 - Saro_1976 - branched-chain alpha-keto acid dehydrogenase E1 component 1968 61.72 -1 2094575..2095525 - 316 87199994 - Saro_1977 - thymidylate synthase 1969 64.54 0 2095976..2096539 + 187 87199995 - Saro_1978 - hypothetical protein 1970 65.16 0 2096600..2098657 - 685 87199996 - Saro_1979 - DEAD/DEAH box helicase-like 1971 60.99 -1 2098850..2099254 + 134 87199997 - Saro_1980 - AtsE 1972 63.12 0 2099370..2099651 + 93 87199998 - Saro_1981 - hypothetical protein 1973 65.52 0 2099682..2103176 + 1164 87199999 - Saro_1982 - transcription-repair coupling factor 1974 65.82 0 2103173..2104465 - 430 87200000 - Saro_1983 - diguanylate cyclase/phosphodiesterase 1975 63.61 0 2104598..2105383 + 261 87200001 ppnK Saro_1984 - inorganic polyphosphate/ATP-NAD kinase 1976 61.58 -1 2105847..2106023 + 58 87200002 - Saro_1985 - hypothetical protein 1977 66.10 0 2106023..2106556 + 177 87200003 - Saro_1986 - hypothetical protein 1978 65.96 0 2106466..2109585 - 1039 87200004 - Saro_1987 - hypothetical protein 1979 66.92 0 2109582..2117429 - 2615 87200005 - Saro_1988 - hypothetical protein 1980 65.82 0 2117429..2119192 - 587 87200006 - Saro_1989 - hemolysin activation/secretion protein-like 1981 63.08 0 2119388..2122123 - 911 87200007 - Saro_1990 - preprotein translocase subunit SecA 1982 70.10 +1 2122230..2122520 - 96 87200008 - Saro_1991 - hypothetical protein 1983 66.67 0 2123244..2124470 + 408 87200009 argJ Saro_1993 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 1984 63.70 0 2124484..2125089 + 201 87200010 - Saro_1994 - glutathione S-transferase-like 1985 66.91 0 2125098..2125907 + 269 87200011 - Saro_1995 - inositol monophosphatase 1986 63.86 0 2125964..2126284 - 106 87200012 - Saro_1996 - thioredoxin 1987 67.47 0 2126345..2129830 - 1161 87200013 - Saro_1997 - UvrD/REP helicase 1988 70.22 +1 2129827..2132808 - 993 87200014 - Saro_1998 - helicase 1989 66.25 0 2132808..2133530 - 240 87200015 - Saro_1999 - nucleotidyl transferase 1990 66.87 0 2133527..2134510 - 327 87200016 - Saro_2000 - aminoglycoside phosphotransferase 1991 68.67 +1 2134501..2134950 - 149 87200017 - Saro_2001 - hypothetical protein 1992 68.71 +1 2134947..2137295 - 782 87200018 - Saro_2002 - PAS/PAC sensor signal transduction histidine kinase 1993 62.69 0 2137479..2138885 - 468 87200019 - Saro_2003 - S-adenosyl-L-homocysteine hydrolase 1994 64.38 0 2139107..2139586 + 159 87200020 - Saro_2004 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1995 67.06 0 2139629..2140384 - 251 87200021 - Saro_2005 - hypothetical protein 1996 67.32 0 2140389..2140850 - 153 87200022 - Saro_2006 - hypothetical protein 1997 65.85 0 2140974..2141588 - 204 87200023 - Saro_2007 - GTP cyclohydrolase 1998 64.82 0 2141605..2143119 - 504 87200024 - Saro_2008 - phospholipase D/transphosphatidylase 1999 64.45 0 2143262..2144029 + 255 87200025 - Saro_2009 - hypothetical protein 2000 66.02 0 2144010..2144318 - 102 87200026 - Saro_2010 - septum formation initiator 2001 66.04 0 2144540..2145019 - 159 87200027 - Saro_2011 - hypothetical protein 2002 67.26 0 2145016..2145861 - 281 87200028 - Saro_2012 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2003 62.17 0 2145858..2146124 - 88 87200029 - Saro_2013 - glutaredoxin GrxC 2004 65.15 0 2146285..2146746 + 153 87200030 - Saro_2014 - heat shock protein Hsp20 2005 68.44 0 2146923..2148500 + 525 87200031 - Saro_2015 - ABC transporter related 2006 67.10 0 2148509..2149198 - 229 87200032 - Saro_2016 - Crp/FNR family transcriptional regulator 2007 65.38 0 2149283..2150914 - 543 87200033 - Saro_2017 - CTP synthetase 2008 68.94 +1 2151067..2151462 - 131 87200034 - Saro_2018 - protein translocase subunit secG 2009 69.26 +1 2151568..2152338 - 256 87200035 - Saro_2019 - triosephosphate isomerase 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.