IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1877	 66.00	0	1992136..1993641	-	501	87199903	-	Saro_1886	-	major facilitator transporter
1878	 66.09	0	1993798..1994832	-	344	87199904	-	Saro_1887	-	LacI family transcription regulator
1879	 64.13	0	1995165..1997885	+	906	87199905	-	Saro_1888	-	TonB-dependent receptor
1880	 63.89	0	1998001..1999515	+	504	87199906	-	Saro_1889	-	tryptophan halogenase
1881	 63.93	0	1999508..2001337	+	609	87199907	-	Saro_1890	-	alpha amylase, catalytic region
1882	 63.85	0	2001334..2002968	+	544	87199908	-	Saro_1891	-	alpha amylase, catalytic region
1883	 63.88	0	2002968..2005016	+	682	87199909	-	Saro_1892	-	alpha-glucosidase
1884	 64.39	0	2005196..2006644	+	482	87199910	-	Saro_1893	-	glucose-6-phosphate 1-dehydrogenase
1885	 64.91	0	2006637..2007263	+	208	87199911	-	Saro_1894	-	6-phosphogluconolactonase
1886	 65.62	0	2007263..2009083	+	606	87199912	-	Saro_1895	-	phosphogluconate dehydratase
1887	 66.15	0	2009128..2010096	+	322	87199913	-	Saro_1896	-	glucokinase
1888	 65.52	0	2010219..2011001	+	260	87199914	-	Saro_1897	-	enoyl-CoA hydratase
1889	 65.78	0	2011040..2011489	+	149	87199915	-	Saro_1898	-	hypothetical protein
1890	 66.31	0	2011490..2012599	-	369	87199916	-	Saro_1899	-	3-dehydroquinate synthase
1891	 63.29	0	2012590..2013240	-	216	87199917	-	Saro_1900	-	shikimate kinase
1892	 65.61	0	2013392..2015284	+	630	87199918	-	Saro_1901	-	hypothetical protein
1893	 66.44	0	2015288..2016169	+	293	87199919	-	Saro_1902	-	phage integrase
1894	 63.30	0	2016196..2017146	+	316	87199920	-	Saro_1903	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1895	 64.30	0	2017265..2018746	+	493	87199921	-	Saro_1904	-	peptidase M48, Ste24p
1896	 60.00	-1	2018861..2019040	-	59	87199922	-	Saro_1905	-	Flp/Fap pilin component
1897	 50.79	-2	2019139..2019327	-	62	87199923	-	Saro_1906	-	hypothetical protein
1898	 59.78	-1	2019395..2019844	+	149	87199924	-	Saro_1907	-	NUDIX hydrolase
1899	 62.22	0	2020312..2021457	+	381	87199925	-	Saro_1908	-	pyruvate dehydrogenase (lipoamide)
1900	 62.19	0	2021459..2022844	+	461	87199926	-	Saro_1909	-	pyruvate dehydrogenase subunit beta
1901	 59.81	-1	2023108..2023530	-	140	87199927	-	Saro_1910	-	TadE-like
1902	 59.96	-1	2023527..2023988	-	153	87199928	-	Saro_1911	-	TadE-like
1903	 59.63	-1	2023985..2025292	-	435	87199929	-	Saro_1912	-	hypothetical protein
1904	 65.82	0	2025430..2026017	+	195	87199930	-	Saro_1913	-	hypothetical protein
1905	 61.78	-1	2026101..2026571	+	156	87199931	-	Saro_1914	-	hypothetical protein
1906	 63.75	0	2026593..2027963	-	456	87199932	-	Saro_1915	-	tRNA (uracil-5-)-methyltransferase Gid
1907	 61.82	-1	2028031..2028711	+	226	87199933	-	Saro_1916	-	YhhN-like
1908	 62.71	0	2028689..2029042	-	117	87199934	-	Saro_1917	-	hypothetical protein
1909	 65.20	0	2029039..2031765	-	908	87199935	-	Saro_1918	-	DNA gyrase subunit A
1910	 64.59	0	2032081..2033382	+	433	87199936	-	Saro_1919	-	hypothetical protein
1911	 64.59	0	2033469..2034143	-	224	87199937	-	Saro_1920	-	carbonate dehydratase
1912	 63.99	0	2034189..2035121	+	310	87199938	-	Saro_1921	-	lipoyl synthase
1913	 64.50	0	2035124..2035585	+	153	87199939	-	Saro_1922	-	cyclase/dehydrase
1914	 63.89	0	2035546..2036049	-	167	87199940	-	Saro_1923	-	CinA-like
1915	 64.39	0	2036054..2036623	-	189	87199941	-	Saro_1924	-	hypothetical protein
1916	 64.60	0	2036643..2037803	-	386	87199942	ispDF	Saro_1925	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1917	 63.83	0	2037905..2038960	+	351	87199943	-	Saro_1926	-	dihydrouridine synthase TIM-barrel protein nifR3
1918	 63.81	0	2038957..2040078	+	373	87199944	-	Saro_1927	-	signal transduction histidine kinase, nitrogen specific, NtrB
1919	 60.95	-1	2040075..2041508	+	477	87199945	-	Saro_1928	-	two component, sigma54 specific, Fis family transcriptional regulator
1920	 63.17	0	2041595..2043823	+	742	87199946	-	Saro_1929	-	periplasmic sensor signal transduction histidine kinase
1921	 63.85	0	2043837..2045222	+	461	87199947	-	Saro_1930	-	two component, sigma54 specific, Fis family transcriptional regulator
1922	 60.31	-1	2045402..2045983	+	193	87199948	hfq	Saro_1931	-	RNA-binding protein Hfq
1923	 63.39	0	2046049..2047329	+	426	87199949	-	Saro_1932	-	small GTP-binding protein domain-containing protein
1924	 61.70	-1	2047316..2048140	-	274	87199950	-	Saro_1933	-	MazG family protein
1925	 61.78	-1	2048323..2049489	+	388	87199951	-	Saro_1934	-	phage integrase
1926	 62.87	0	2049480..2051612	+	710	87199952	-	Saro_1935	-	phage integrase
1927	 63.54	0	2051609..2052088	+	159	87199953	-	Saro_1936	-	hypothetical protein
1928	 61.46	-1	2052456..2053223	-	255	87199954	-	Saro_1937	-	beta-lactamase-like
1929	 61.03	-1	2053220..2053999	-	259	87199955	-	Saro_1938	-	TatD-related deoxyribonuclease
1930	 58.75	-2	2053996..2055561	-	521	87199956	-	Saro_1939	-	methionyl-tRNA synthetase
1931	 66.46	0	2055596..2056552	-	318	87199957	-	Saro_1940	-	DNA polymerase III, delta prime subunit
1932	 67.14	0	2056549..2057178	-	209	87199958	-	Saro_1941	-	thymidylate kinase
1933	 63.10	0	2057175..2058350	-	391	87199959	-	Saro_1942	-	Serine-type D-Ala-D-Ala carboxypeptidase
1934	 66.01	0	2058390..2059301	-	303	87199960	-	Saro_1943	-	sporulation related protein
1935	 63.33	0	2059285..2060304	-	339	87199961	-	Saro_1944	-	lytic murein transglycosylase
1936	 62.35	0	2060883..2062295	-	470	87199962	-	Saro_1945	-	dihydrolipoamide dehydrogenase
1937	 64.80	0	2062376..2063659	-	427	87199963	-	Saro_1946	-	dihydrolipoamide acetyltransferase, long form
1938	 65.58	0	2063832..2064290	+	152	87199964	-	Saro_1947	-	hypothetical protein
1939	 64.91	0	2064303..2066582	-	759	87199965	-	Saro_1948	-	ribonuclease R
1940	 65.00	0	2066623..2067942	-	439	87199966	-	Saro_1949	-	peptidase M28
1941	 63.50	0	2068026..2069573	-	515	87199967	-	Saro_1950	-	prolyl-tRNA synthetase
1942	 59.65	-1	2069644..2070213	-	189	87199968	-	Saro_1951	-	polyhydroxyalkanoate synthesis repressor PhaR
1943	 64.80	0	2070281..2071351	-	356	87199969	-	Saro_1952	-	alanine racemase
1944	 62.63	0	2071344..2072978	-	544	87199970	-	Saro_1953	-	general substrate transporter
1945	 66.90	0	2073050..2073481	-	143	87199971	-	Saro_1954	-	hypothetical protein
1946	 63.06	0	2073483..2074037	-	184	87199972	-	Saro_1955	-	colicin V production protein
1947	 65.06	0	2074050..2075417	-	455	87199973	-	Saro_1956	-	DNA repair protein RadA
1948	 65.94	0	2075694..2076518	-	274	87199974	-	Saro_1957	-	inositol-1(or 4)-monophosphatase
1949	 60.46	-1	2076522..2077085	-	187	87199975	-	Saro_1958	-	elongation factor P
1950	 63.85	0	2077196..2077585	+	129	87199976	-	Saro_1959	-	hypothetical protein
1951	 63.59	0	2077582..2079534	-	650	87199977	-	Saro_1960	-	oligopeptide transporter OPT
1952	 63.95	0	2079602..2080741	-	379	87199978	-	Saro_1961	-	ErfK/YbiS/YcfS/YnhG
1953	 61.53	-1	2080800..2081441	-	213	87199979	-	Saro_1962	-	thiamine-phosphate pyrophosphorylase
1954	 62.30	0	2081521..2081886	+	121	87199980	-	Saro_1963	-	hypothetical protein
1955	 61.70	-1	2081972..2082877	-	301	87199981	-	Saro_1964	-	fructose-1,6-bisphosphate aldolase
1956	 64.14	0	2083063..2084250	-	395	87199982	pgk	Saro_1965	-	phosphoglycerate kinase
1957	 65.39	0	2084247..2084717	-	156	87199983	-	Saro_1966	-	hypothetical protein
1958	 62.50	0	2084730..2085737	-	335	87199984	-	Saro_1967	-	glyceraldehyde-3-phosphate dehydrogenase
1959	 63.97	0	2085758..2087725	-	655	87199985	-	Saro_1968	-	transketolase
1960	 62.62	0	2087722..2088042	-	106	87199986	-	Saro_1969	-	hypothetical protein
1961	 63.42	0	2088167..2088505	+	112	87199987	-	Saro_1970	-	hypothetical protein
1962	 66.16	0	2088711..2089298	+	195	87199988	-	Saro_1971	-	5-formyltetrahydrofolate cyclo-ligase
1963	 64.38	0	2089295..2089513	+	72	87199989	-	Saro_1972	-	hypothetical protein
1964	 63.35	0	2090151..2090723	-	190	87199990	-	Saro_1973	-	hypothetical protein
1965	 65.18	0	2090753..2092093	-	446	87199991	-	Saro_1974	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1966	 61.36	-1	2092097..2093152	-	351	87199992	-	Saro_1975	-	branched-chain alpha-keto acid dehydrogenase E1 component
1967	 64.08	0	2093149..2094423	-	424	87199993	-	Saro_1976	-	branched-chain alpha-keto acid dehydrogenase E1 component
1968	 61.72	-1	2094575..2095525	-	316	87199994	-	Saro_1977	-	thymidylate synthase
1969	 64.54	0	2095976..2096539	+	187	87199995	-	Saro_1978	-	hypothetical protein
1970	 65.16	0	2096600..2098657	-	685	87199996	-	Saro_1979	-	DEAD/DEAH box helicase-like
1971	 60.99	-1	2098850..2099254	+	134	87199997	-	Saro_1980	-	AtsE
1972	 63.12	0	2099370..2099651	+	93	87199998	-	Saro_1981	-	hypothetical protein
1973	 65.52	0	2099682..2103176	+	1164	87199999	-	Saro_1982	-	transcription-repair coupling factor
1974	 65.82	0	2103173..2104465	-	430	87200000	-	Saro_1983	-	diguanylate cyclase/phosphodiesterase
1975	 63.61	0	2104598..2105383	+	261	87200001	ppnK	Saro_1984	-	inorganic polyphosphate/ATP-NAD kinase
1976	 61.58	-1	2105847..2106023	+	58	87200002	-	Saro_1985	-	hypothetical protein
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.