version 1.0
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1869 68.48 0 1979797..1981896 + 699 87199895 - Saro_1878 - glycoside hydrolase, clan GH-D 1870 65.52 0 1981934..1983067 + 377 87199896 - Saro_1879 - levansucrase 1871 66.09 0 1983088..1984122 - 344 87199897 - Saro_1880 - LacI family transcription regulator 1872 62.85 0 1984386..1986902 + 838 87199898 - Saro_1881 - TonB-dependent receptor 1873 64.14 0 1987056..1988561 + 501 87199899 - Saro_1882 - tryptophan halogenase 1874 69.07 +1 1988558..1989931 + 457 87199900 - Saro_1883 - TPR repeat-containing protein 1875 66.89 0 1989933..1991255 + 440 87199901 - Saro_1884 - glycoside hydrolase family protein 1876 67.11 0 1991234..1992139 - 301 87199902 - Saro_1885 - fructokinase 1877 66.00 0 1992136..1993641 - 501 87199903 - Saro_1886 - major facilitator transporter 1878 66.09 0 1993798..1994832 - 344 87199904 - Saro_1887 - LacI family transcription regulator 1879 64.13 0 1995165..1997885 + 906 87199905 - Saro_1888 - TonB-dependent receptor 1880 63.89 0 1998001..1999515 + 504 87199906 - Saro_1889 - tryptophan halogenase 1881 63.93 0 1999508..2001337 + 609 87199907 - Saro_1890 - alpha amylase, catalytic region 1882 63.85 0 2001334..2002968 + 544 87199908 - Saro_1891 - alpha amylase, catalytic region 1883 63.88 0 2002968..2005016 + 682 87199909 - Saro_1892 - alpha-glucosidase 1884 64.39 0 2005196..2006644 + 482 87199910 - Saro_1893 - glucose-6-phosphate 1-dehydrogenase 1885 64.91 0 2006637..2007263 + 208 87199911 - Saro_1894 - 6-phosphogluconolactonase 1886 65.62 0 2007263..2009083 + 606 87199912 - Saro_1895 - phosphogluconate dehydratase 1887 66.15 0 2009128..2010096 + 322 87199913 - Saro_1896 - glucokinase 1888 65.52 0 2010219..2011001 + 260 87199914 - Saro_1897 - enoyl-CoA hydratase 1889 65.78 0 2011040..2011489 + 149 87199915 - Saro_1898 - hypothetical protein 1890 66.31 0 2011490..2012599 - 369 87199916 - Saro_1899 - 3-dehydroquinate synthase 1891 63.29 0 2012590..2013240 - 216 87199917 - Saro_1900 - shikimate kinase 1892 65.61 0 2013392..2015284 + 630 87199918 - Saro_1901 - hypothetical protein 1893 66.44 0 2015288..2016169 + 293 87199919 - Saro_1902 - phage integrase 1894 63.30 0 2016196..2017146 + 316 87199920 - Saro_1903 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 1895 64.30 0 2017265..2018746 + 493 87199921 - Saro_1904 - peptidase M48, Ste24p 1896 60.00 -1 2018861..2019040 - 59 87199922 - Saro_1905 - Flp/Fap pilin component 1897 50.79 -2 2019139..2019327 - 62 87199923 - Saro_1906 - hypothetical protein 1898 59.78 -1 2019395..2019844 + 149 87199924 - Saro_1907 - NUDIX hydrolase 1899 62.22 0 2020312..2021457 + 381 87199925 - Saro_1908 - pyruvate dehydrogenase (lipoamide) 1900 62.19 0 2021459..2022844 + 461 87199926 - Saro_1909 - pyruvate dehydrogenase subunit beta 1901 59.81 -1 2023108..2023530 - 140 87199927 - Saro_1910 - TadE-like 1902 59.96 -1 2023527..2023988 - 153 87199928 - Saro_1911 - TadE-like 1903 59.63 -1 2023985..2025292 - 435 87199929 - Saro_1912 - hypothetical protein 1904 65.82 0 2025430..2026017 + 195 87199930 - Saro_1913 - hypothetical protein 1905 61.78 -1 2026101..2026571 + 156 87199931 - Saro_1914 - hypothetical protein 1906 63.75 0 2026593..2027963 - 456 87199932 - Saro_1915 - tRNA (uracil-5-)-methyltransferase Gid 1907 61.82 -1 2028031..2028711 + 226 87199933 - Saro_1916 - YhhN-like 1908 62.71 0 2028689..2029042 - 117 87199934 - Saro_1917 - hypothetical protein 1909 65.20 0 2029039..2031765 - 908 87199935 - Saro_1918 - DNA gyrase subunit A 1910 64.59 0 2032081..2033382 + 433 87199936 - Saro_1919 - hypothetical protein 1911 64.59 0 2033469..2034143 - 224 87199937 - Saro_1920 - carbonate dehydratase 1912 63.99 0 2034189..2035121 + 310 87199938 - Saro_1921 - lipoyl synthase 1913 64.50 0 2035124..2035585 + 153 87199939 - Saro_1922 - cyclase/dehydrase 1914 63.89 0 2035546..2036049 - 167 87199940 - Saro_1923 - CinA-like 1915 64.39 0 2036054..2036623 - 189 87199941 - Saro_1924 - hypothetical protein 1916 64.60 0 2036643..2037803 - 386 87199942 ispDF Saro_1925 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1917 63.83 0 2037905..2038960 + 351 87199943 - Saro_1926 - dihydrouridine synthase TIM-barrel protein nifR3 1918 63.81 0 2038957..2040078 + 373 87199944 - Saro_1927 - signal transduction histidine kinase, nitrogen specific, NtrB 1919 60.95 -1 2040075..2041508 + 477 87199945 - Saro_1928 - two component, sigma54 specific, Fis family transcriptional regulator 1920 63.17 0 2041595..2043823 + 742 87199946 - Saro_1929 - periplasmic sensor signal transduction histidine kinase 1921 63.85 0 2043837..2045222 + 461 87199947 - Saro_1930 - two component, sigma54 specific, Fis family transcriptional regulator 1922 60.31 -1 2045402..2045983 + 193 87199948 hfq Saro_1931 - RNA-binding protein Hfq 1923 63.39 0 2046049..2047329 + 426 87199949 - Saro_1932 - small GTP-binding protein domain-containing protein 1924 61.70 -1 2047316..2048140 - 274 87199950 - Saro_1933 - MazG family protein 1925 61.78 -1 2048323..2049489 + 388 87199951 - Saro_1934 - phage integrase 1926 62.87 0 2049480..2051612 + 710 87199952 - Saro_1935 - phage integrase 1927 63.54 0 2051609..2052088 + 159 87199953 - Saro_1936 - hypothetical protein 1928 61.46 -1 2052456..2053223 - 255 87199954 - Saro_1937 - beta-lactamase-like 1929 61.03 -1 2053220..2053999 - 259 87199955 - Saro_1938 - TatD-related deoxyribonuclease 1930 58.75 -2 2053996..2055561 - 521 87199956 - Saro_1939 - methionyl-tRNA synthetase 1931 66.46 0 2055596..2056552 - 318 87199957 - Saro_1940 - DNA polymerase III, delta prime subunit 1932 67.14 0 2056549..2057178 - 209 87199958 - Saro_1941 - thymidylate kinase 1933 63.10 0 2057175..2058350 - 391 87199959 - Saro_1942 - Serine-type D-Ala-D-Ala carboxypeptidase 1934 66.01 0 2058390..2059301 - 303 87199960 - Saro_1943 - sporulation related protein 1935 63.33 0 2059285..2060304 - 339 87199961 - Saro_1944 - lytic murein transglycosylase 1936 62.35 0 2060883..2062295 - 470 87199962 - Saro_1945 - dihydrolipoamide dehydrogenase 1937 64.80 0 2062376..2063659 - 427 87199963 - Saro_1946 - dihydrolipoamide acetyltransferase, long form 1938 65.58 0 2063832..2064290 + 152 87199964 - Saro_1947 - hypothetical protein 1939 64.91 0 2064303..2066582 - 759 87199965 - Saro_1948 - ribonuclease R 1940 65.00 0 2066623..2067942 - 439 87199966 - Saro_1949 - peptidase M28 1941 63.50 0 2068026..2069573 - 515 87199967 - Saro_1950 - prolyl-tRNA synthetase 1942 59.65 -1 2069644..2070213 - 189 87199968 - Saro_1951 - polyhydroxyalkanoate synthesis repressor PhaR 1943 64.80 0 2070281..2071351 - 356 87199969 - Saro_1952 - alanine racemase 1944 62.63 0 2071344..2072978 - 544 87199970 - Saro_1953 - general substrate transporter 1945 66.90 0 2073050..2073481 - 143 87199971 - Saro_1954 - hypothetical protein 1946 63.06 0 2073483..2074037 - 184 87199972 - Saro_1955 - colicin V production protein 1947 65.06 0 2074050..2075417 - 455 87199973 - Saro_1956 - DNA repair protein RadA 1948 65.94 0 2075694..2076518 - 274 87199974 - Saro_1957 - inositol-1(or 4)-monophosphatase 1949 60.46 -1 2076522..2077085 - 187 87199975 - Saro_1958 - elongation factor P 1950 63.85 0 2077196..2077585 + 129 87199976 - Saro_1959 - hypothetical protein 1951 63.59 0 2077582..2079534 - 650 87199977 - Saro_1960 - oligopeptide transporter OPT 1952 63.95 0 2079602..2080741 - 379 87199978 - Saro_1961 - ErfK/YbiS/YcfS/YnhG 1953 61.53 -1 2080800..2081441 - 213 87199979 - Saro_1962 - thiamine-phosphate pyrophosphorylase 1954 62.30 0 2081521..2081886 + 121 87199980 - Saro_1963 - hypothetical protein 1955 61.70 -1 2081972..2082877 - 301 87199981 - Saro_1964 - fructose-1,6-bisphosphate aldolase 1956 64.14 0 2083063..2084250 - 395 87199982 pgk Saro_1965 - phosphoglycerate kinase 1957 65.39 0 2084247..2084717 - 156 87199983 - Saro_1966 - hypothetical protein 1958 62.50 0 2084730..2085737 - 335 87199984 - Saro_1967 - glyceraldehyde-3-phosphate dehydrogenase 1959 63.97 0 2085758..2087725 - 655 87199985 - Saro_1968 - transketolase 1960 62.62 0 2087722..2088042 - 106 87199986 - Saro_1969 - hypothetical protein 1961 63.42 0 2088167..2088505 + 112 87199987 - Saro_1970 - hypothetical protein 1962 66.16 0 2088711..2089298 + 195 87199988 - Saro_1971 - 5-formyltetrahydrofolate cyclo-ligase 1963 64.38 0 2089295..2089513 + 72 87199989 - Saro_1972 - hypothetical protein 1964 63.35 0 2090151..2090723 - 190 87199990 - Saro_1973 - hypothetical protein 1965 65.18 0 2090753..2092093 - 446 87199991 - Saro_1974 - branched-chain alpha-keto acid dehydrogenase subunit E2 1966 61.36 -1 2092097..2093152 - 351 87199992 - Saro_1975 - branched-chain alpha-keto acid dehydrogenase E1 component 1967 64.08 0 2093149..2094423 - 424 87199993 - Saro_1976 - branched-chain alpha-keto acid dehydrogenase E1 component 1968 61.72 -1 2094575..2095525 - 316 87199994 - Saro_1977 - thymidylate synthase 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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