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Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1847 64.24 0 1955826..1957391 - 521 87199873 - Saro_1856 - type II secretion system protein E 1848 65.56 0 1957674..1958576 + 300 87199874 - Saro_1857 - hypothetical protein 1849 67.26 0 1958674..1959516 - 280 87199875 - Saro_1858 - haloacid dehalogenase-like hydrolase 1850 66.67 0 1959513..1960985 - 490 87199876 - Saro_1859 - pyruvate carboxyltransferase 1851 68.99 +1 1960982..1962316 - 444 87199877 - Saro_1860 - carbamoyl-phosphate synthase L chain, ATP-binding 1852 66.67 0 1962318..1962761 - 147 87199878 - Saro_1861 - biotin carboxyl carrier protein 1853 66.91 0 1962769..1963989 - 406 87199879 - Saro_1862 - hypothetical protein 1854 67.42 0 1964115..1964915 + 266 87199880 - Saro_1863 - IclR family transcriptional regulator 1855 66.96 0 1964998..1966011 + 337 87199881 - Saro_1864 - alcohol dehydrogenase 1856 66.12 0 1966070..1966615 + 181 87199882 - Saro_1865 - hypothetical protein 1857 66.43 0 1966737..1968014 + 425 87199883 - Saro_1866 - major facilitator transporter 1858 65.92 0 1968031..1968969 + 312 87199884 - Saro_1867 - AraC family transcriptional regulator 1859 64.48 0 1969087..1971690 + 867 87199885 - Saro_1868 - TonB-dependent receptor 1860 61.80 -1 1971767..1972300 + 177 87199886 - Saro_1869 - 2,4'-dihydroxyacetophenone dioxygenase 1861 61.64 -1 1972326..1972862 + 178 87199887 - Saro_1870 - 2,4'-dihydroxyacetophenone dioxygenase 1862 64.04 0 1972870..1973403 + 177 87199888 - Saro_1871 - hypothetical protein 1863 66.85 0 1973414..1974484 + 356 87199889 - Saro_1872 - Rieske (2Fe-2S) protein 1864 65.24 0 1974514..1975353 + 279 87199890 - Saro_1873 - short-chain dehydrogenase/reductase SDR 1865 66.47 0 1975363..1976370 + 335 87199891 - Saro_1874 - GroES-related 1866 64.65 0 1976401..1977243 + 280 87199892 - Saro_1875 - short-chain dehydrogenase/reductase SDR 1867 61.57 -1 1977248..1978189 - 313 87199893 - Saro_1876 - intradiol ring-cleavage dioxygenase 1868 63.11 0 1978421..1979797 + 458 87199894 - Saro_1877 - major facilitator transporter 1869 68.48 0 1979797..1981896 + 699 87199895 - Saro_1878 - glycoside hydrolase, clan GH-D 1870 65.52 0 1981934..1983067 + 377 87199896 - Saro_1879 - levansucrase 1871 66.09 0 1983088..1984122 - 344 87199897 - Saro_1880 - LacI family transcription regulator 1872 62.85 0 1984386..1986902 + 838 87199898 - Saro_1881 - TonB-dependent receptor 1873 64.14 0 1987056..1988561 + 501 87199899 - Saro_1882 - tryptophan halogenase 1874 69.07 +1 1988558..1989931 + 457 87199900 - Saro_1883 - TPR repeat-containing protein 1875 66.89 0 1989933..1991255 + 440 87199901 - Saro_1884 - glycoside hydrolase family protein 1876 67.11 0 1991234..1992139 - 301 87199902 - Saro_1885 - fructokinase 1877 66.00 0 1992136..1993641 - 501 87199903 - Saro_1886 - major facilitator transporter 1878 66.09 0 1993798..1994832 - 344 87199904 - Saro_1887 - LacI family transcription regulator 1879 64.13 0 1995165..1997885 + 906 87199905 - Saro_1888 - TonB-dependent receptor 1880 63.89 0 1998001..1999515 + 504 87199906 - Saro_1889 - tryptophan halogenase 1881 63.93 0 1999508..2001337 + 609 87199907 - Saro_1890 - alpha amylase, catalytic region 1882 63.85 0 2001334..2002968 + 544 87199908 - Saro_1891 - alpha amylase, catalytic region 1883 63.88 0 2002968..2005016 + 682 87199909 - Saro_1892 - alpha-glucosidase 1884 64.39 0 2005196..2006644 + 482 87199910 - Saro_1893 - glucose-6-phosphate 1-dehydrogenase 1885 64.91 0 2006637..2007263 + 208 87199911 - Saro_1894 - 6-phosphogluconolactonase 1886 65.62 0 2007263..2009083 + 606 87199912 - Saro_1895 - phosphogluconate dehydratase 1887 66.15 0 2009128..2010096 + 322 87199913 - Saro_1896 - glucokinase 1888 65.52 0 2010219..2011001 + 260 87199914 - Saro_1897 - enoyl-CoA hydratase 1889 65.78 0 2011040..2011489 + 149 87199915 - Saro_1898 - hypothetical protein 1890 66.31 0 2011490..2012599 - 369 87199916 - Saro_1899 - 3-dehydroquinate synthase 1891 63.29 0 2012590..2013240 - 216 87199917 - Saro_1900 - shikimate kinase 1892 65.61 0 2013392..2015284 + 630 87199918 - Saro_1901 - hypothetical protein 1893 66.44 0 2015288..2016169 + 293 87199919 - Saro_1902 - phage integrase 1894 63.30 0 2016196..2017146 + 316 87199920 - Saro_1903 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 1895 64.30 0 2017265..2018746 + 493 87199921 - Saro_1904 - peptidase M48, Ste24p 1896 60.00 -1 2018861..2019040 - 59 87199922 - Saro_1905 - Flp/Fap pilin component 1897 50.79 -2 2019139..2019327 - 62 87199923 - Saro_1906 - hypothetical protein 1898 59.78 -1 2019395..2019844 + 149 87199924 - Saro_1907 - NUDIX hydrolase 1899 62.22 0 2020312..2021457 + 381 87199925 - Saro_1908 - pyruvate dehydrogenase (lipoamide) 1900 62.19 0 2021459..2022844 + 461 87199926 - Saro_1909 - pyruvate dehydrogenase subunit beta 1901 59.81 -1 2023108..2023530 - 140 87199927 - Saro_1910 - TadE-like 1902 59.96 -1 2023527..2023988 - 153 87199928 - Saro_1911 - TadE-like 1903 59.63 -1 2023985..2025292 - 435 87199929 - Saro_1912 - hypothetical protein 1904 65.82 0 2025430..2026017 + 195 87199930 - Saro_1913 - hypothetical protein 1905 61.78 -1 2026101..2026571 + 156 87199931 - Saro_1914 - hypothetical protein 1906 63.75 0 2026593..2027963 - 456 87199932 - Saro_1915 - tRNA (uracil-5-)-methyltransferase Gid 1907 61.82 -1 2028031..2028711 + 226 87199933 - Saro_1916 - YhhN-like 1908 62.71 0 2028689..2029042 - 117 87199934 - Saro_1917 - hypothetical protein 1909 65.20 0 2029039..2031765 - 908 87199935 - Saro_1918 - DNA gyrase subunit A 1910 64.59 0 2032081..2033382 + 433 87199936 - Saro_1919 - hypothetical protein 1911 64.59 0 2033469..2034143 - 224 87199937 - Saro_1920 - carbonate dehydratase 1912 63.99 0 2034189..2035121 + 310 87199938 - Saro_1921 - lipoyl synthase 1913 64.50 0 2035124..2035585 + 153 87199939 - Saro_1922 - cyclase/dehydrase 1914 63.89 0 2035546..2036049 - 167 87199940 - Saro_1923 - CinA-like 1915 64.39 0 2036054..2036623 - 189 87199941 - Saro_1924 - hypothetical protein 1916 64.60 0 2036643..2037803 - 386 87199942 ispDF Saro_1925 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1917 63.83 0 2037905..2038960 + 351 87199943 - Saro_1926 - dihydrouridine synthase TIM-barrel protein nifR3 1918 63.81 0 2038957..2040078 + 373 87199944 - Saro_1927 - signal transduction histidine kinase, nitrogen specific, NtrB 1919 60.95 -1 2040075..2041508 + 477 87199945 - Saro_1928 - two component, sigma54 specific, Fis family transcriptional regulator 1920 63.17 0 2041595..2043823 + 742 87199946 - Saro_1929 - periplasmic sensor signal transduction histidine kinase 1921 63.85 0 2043837..2045222 + 461 87199947 - Saro_1930 - two component, sigma54 specific, Fis family transcriptional regulator 1922 60.31 -1 2045402..2045983 + 193 87199948 hfq Saro_1931 - RNA-binding protein Hfq 1923 63.39 0 2046049..2047329 + 426 87199949 - Saro_1932 - small GTP-binding protein domain-containing protein 1924 61.70 -1 2047316..2048140 - 274 87199950 - Saro_1933 - MazG family protein 1925 61.78 -1 2048323..2049489 + 388 87199951 - Saro_1934 - phage integrase 1926 62.87 0 2049480..2051612 + 710 87199952 - Saro_1935 - phage integrase 1927 63.54 0 2051609..2052088 + 159 87199953 - Saro_1936 - hypothetical protein 1928 61.46 -1 2052456..2053223 - 255 87199954 - Saro_1937 - beta-lactamase-like 1929 61.03 -1 2053220..2053999 - 259 87199955 - Saro_1938 - TatD-related deoxyribonuclease 1930 58.75 -2 2053996..2055561 - 521 87199956 - Saro_1939 - methionyl-tRNA synthetase 1931 66.46 0 2055596..2056552 - 318 87199957 - Saro_1940 - DNA polymerase III, delta prime subunit 1932 67.14 0 2056549..2057178 - 209 87199958 - Saro_1941 - thymidylate kinase 1933 63.10 0 2057175..2058350 - 391 87199959 - Saro_1942 - Serine-type D-Ala-D-Ala carboxypeptidase 1934 66.01 0 2058390..2059301 - 303 87199960 - Saro_1943 - sporulation related protein 1935 63.33 0 2059285..2060304 - 339 87199961 - Saro_1944 - lytic murein transglycosylase 1936 62.35 0 2060883..2062295 - 470 87199962 - Saro_1945 - dihydrolipoamide dehydrogenase 1937 64.80 0 2062376..2063659 - 427 87199963 - Saro_1946 - dihydrolipoamide acetyltransferase, long form 1938 65.58 0 2063832..2064290 + 152 87199964 - Saro_1947 - hypothetical protein 1939 64.91 0 2064303..2066582 - 759 87199965 - Saro_1948 - ribonuclease R 1940 65.00 0 2066623..2067942 - 439 87199966 - Saro_1949 - peptidase M28 1941 63.50 0 2068026..2069573 - 515 87199967 - Saro_1950 - prolyl-tRNA synthetase 1942 59.65 -1 2069644..2070213 - 189 87199968 - Saro_1951 - polyhydroxyalkanoate synthesis repressor PhaR 1943 64.80 0 2070281..2071351 - 356 87199969 - Saro_1952 - alanine racemase 1944 62.63 0 2071344..2072978 - 544 87199970 - Saro_1953 - general substrate transporter 1945 66.90 0 2073050..2073481 - 143 87199971 - Saro_1954 - hypothetical protein 1946 63.06 0 2073483..2074037 - 184 87199972 - Saro_1955 - colicin V production protein 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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