IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1821	 62.75	0	1930793..1931098	-	101	87199847	-	Saro_1830	-	PhnA protein
1822	 66.53	0	1931151..1931903	-	250	87199848	-	Saro_1831	-	hypothetical protein
1823	 66.67	0	1931908..1932312	-	134	87199849	-	Saro_1832	-	hypothetical protein
1824	 65.75	0	1932309..1932746	-	145	87199850	-	Saro_1833	-	hypothetical protein
1825	 65.15	0	1932781..1933176	-	131	87199851	-	Saro_1834	-	hypothetical protein
1826	 67.62	0	1933469..1934308	-	279	87199852	dapD	Saro_1835	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1827	 62.61	0	1934355..1935044	-	229	87199853	-	Saro_1836	-	pyrimidine 5-nucleotidase
1828	 70.00	+1	1935151..1937463	+	770	87199854	-	Saro_1837	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1829	 67.46	0	1937510..1938643	-	377	87199855	-	Saro_1838	-	glucose sorbosone dehydrogenase
1830	 68.36	0	1938693..1939283	+	196	87199856	-	Saro_1839	-	ribonuclease H
1831	 63.08	0	1939534..1940676	+	380	87199857	-	Saro_1840	-	DNA methylase N-4/N-6
1832	 67.84	0	1940747..1941853	+	368	87199858	-	Saro_1841	-	dihydropteroate synthase
1833	 67.86	0	1941856..1943274	-	472	87199859	-	Saro_1842	-	two component, sigma54 specific, Fis family transcriptional regulator
1834	 65.07	0	1943572..1944699	+	375	87199860	-	Saro_1843	-	alanine dehydrogenase/PNT-like
1835	 60.35	-1	1944711..1944995	+	94	87199861	-	Saro_1844	-	putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein
1836	 64.54	0	1944995..1946407	+	470	87199862	-	Saro_1845	-	NAD(P) transhydrogenase, beta subunit
1837	 68.79	+1	1946407..1946736	+	109	87199863	-	Saro_1846	-	hypothetical protein
1838	 64.21	0	1946888..1947580	+	230	87199864	-	Saro_1847	-	aspartate racemase
1839	 66.92	0	1947716..1948885	+	389	87199865	-	Saro_1848	-	deoxyguanosinetriphosphate triphosphohydrolase
1840	 68.55	+1	1948878..1949567	+	229	87199866	-	Saro_1849	-	NAD-dependent epimerase/dehydratase
1841	 67.44	0	1949880..1951046	+	388	87199867	-	Saro_1850	-	glycine cleavage system aminomethyltransferase T
1842	 64.52	0	1951046..1951417	+	123	87199868	-	Saro_1851	-	glycine cleavage system protein H
1843	 67.03	0	1951422..1952780	+	452	87199869	-	Saro_1852	-	glycine dehydrogenase subunit 1
1844	 67.44	0	1952777..1954336	+	519	87199870	-	Saro_1853	-	glycine dehydrogenase subunit 2
1845	 65.25	0	1954635..1955552	-	305	87199871	-	Saro_1854	-	hypothetical protein
1846	 65.10	0	1955559..1955813	+	84	87199872	-	Saro_1855	-	hypothetical protein
1847	 64.24	0	1955826..1957391	-	521	87199873	-	Saro_1856	-	type II secretion system protein E
1848	 65.56	0	1957674..1958576	+	300	87199874	-	Saro_1857	-	hypothetical protein
1849	 67.26	0	1958674..1959516	-	280	87199875	-	Saro_1858	-	haloacid dehalogenase-like hydrolase
1850	 66.67	0	1959513..1960985	-	490	87199876	-	Saro_1859	-	pyruvate carboxyltransferase
1851	 68.99	+1	1960982..1962316	-	444	87199877	-	Saro_1860	-	carbamoyl-phosphate synthase L chain, ATP-binding
1852	 66.67	0	1962318..1962761	-	147	87199878	-	Saro_1861	-	biotin carboxyl carrier protein
1853	 66.91	0	1962769..1963989	-	406	87199879	-	Saro_1862	-	hypothetical protein
1854	 67.42	0	1964115..1964915	+	266	87199880	-	Saro_1863	-	IclR family transcriptional regulator
1855	 66.96	0	1964998..1966011	+	337	87199881	-	Saro_1864	-	alcohol dehydrogenase
1856	 66.12	0	1966070..1966615	+	181	87199882	-	Saro_1865	-	hypothetical protein
1857	 66.43	0	1966737..1968014	+	425	87199883	-	Saro_1866	-	major facilitator transporter
1858	 65.92	0	1968031..1968969	+	312	87199884	-	Saro_1867	-	AraC family transcriptional regulator
1859	 64.48	0	1969087..1971690	+	867	87199885	-	Saro_1868	-	TonB-dependent receptor
1860	 61.80	-1	1971767..1972300	+	177	87199886	-	Saro_1869	-	2,4'-dihydroxyacetophenone dioxygenase
1861	 61.64	-1	1972326..1972862	+	178	87199887	-	Saro_1870	-	2,4'-dihydroxyacetophenone dioxygenase
1862	 64.04	0	1972870..1973403	+	177	87199888	-	Saro_1871	-	hypothetical protein
1863	 66.85	0	1973414..1974484	+	356	87199889	-	Saro_1872	-	Rieske (2Fe-2S) protein
1864	 65.24	0	1974514..1975353	+	279	87199890	-	Saro_1873	-	short-chain dehydrogenase/reductase SDR
1865	 66.47	0	1975363..1976370	+	335	87199891	-	Saro_1874	-	GroES-related
1866	 64.65	0	1976401..1977243	+	280	87199892	-	Saro_1875	-	short-chain dehydrogenase/reductase SDR
1867	 61.57	-1	1977248..1978189	-	313	87199893	-	Saro_1876	-	intradiol ring-cleavage dioxygenase
1868	 63.11	0	1978421..1979797	+	458	87199894	-	Saro_1877	-	major facilitator transporter
1869	 68.48	0	1979797..1981896	+	699	87199895	-	Saro_1878	-	glycoside hydrolase, clan GH-D
1870	 65.52	0	1981934..1983067	+	377	87199896	-	Saro_1879	-	levansucrase
1871	 66.09	0	1983088..1984122	-	344	87199897	-	Saro_1880	-	LacI family transcription regulator
1872	 62.85	0	1984386..1986902	+	838	87199898	-	Saro_1881	-	TonB-dependent receptor
1873	 64.14	0	1987056..1988561	+	501	87199899	-	Saro_1882	-	tryptophan halogenase
1874	 69.07	+1	1988558..1989931	+	457	87199900	-	Saro_1883	-	TPR repeat-containing protein
1875	 66.89	0	1989933..1991255	+	440	87199901	-	Saro_1884	-	glycoside hydrolase family protein
1876	 67.11	0	1991234..1992139	-	301	87199902	-	Saro_1885	-	fructokinase
1877	 66.00	0	1992136..1993641	-	501	87199903	-	Saro_1886	-	major facilitator transporter
1878	 66.09	0	1993798..1994832	-	344	87199904	-	Saro_1887	-	LacI family transcription regulator
1879	 64.13	0	1995165..1997885	+	906	87199905	-	Saro_1888	-	TonB-dependent receptor
1880	 63.89	0	1998001..1999515	+	504	87199906	-	Saro_1889	-	tryptophan halogenase
1881	 63.93	0	1999508..2001337	+	609	87199907	-	Saro_1890	-	alpha amylase, catalytic region
1882	 63.85	0	2001334..2002968	+	544	87199908	-	Saro_1891	-	alpha amylase, catalytic region
1883	 63.88	0	2002968..2005016	+	682	87199909	-	Saro_1892	-	alpha-glucosidase
1884	 64.39	0	2005196..2006644	+	482	87199910	-	Saro_1893	-	glucose-6-phosphate 1-dehydrogenase
1885	 64.91	0	2006637..2007263	+	208	87199911	-	Saro_1894	-	6-phosphogluconolactonase
1886	 65.62	0	2007263..2009083	+	606	87199912	-	Saro_1895	-	phosphogluconate dehydratase
1887	 66.15	0	2009128..2010096	+	322	87199913	-	Saro_1896	-	glucokinase
1888	 65.52	0	2010219..2011001	+	260	87199914	-	Saro_1897	-	enoyl-CoA hydratase
1889	 65.78	0	2011040..2011489	+	149	87199915	-	Saro_1898	-	hypothetical protein
1890	 66.31	0	2011490..2012599	-	369	87199916	-	Saro_1899	-	3-dehydroquinate synthase
1891	 63.29	0	2012590..2013240	-	216	87199917	-	Saro_1900	-	shikimate kinase
1892	 65.61	0	2013392..2015284	+	630	87199918	-	Saro_1901	-	hypothetical protein
1893	 66.44	0	2015288..2016169	+	293	87199919	-	Saro_1902	-	phage integrase
1894	 63.30	0	2016196..2017146	+	316	87199920	-	Saro_1903	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1895	 64.30	0	2017265..2018746	+	493	87199921	-	Saro_1904	-	peptidase M48, Ste24p
1896	 60.00	-1	2018861..2019040	-	59	87199922	-	Saro_1905	-	Flp/Fap pilin component
1897	 50.79	-2	2019139..2019327	-	62	87199923	-	Saro_1906	-	hypothetical protein
1898	 59.78	-1	2019395..2019844	+	149	87199924	-	Saro_1907	-	NUDIX hydrolase
1899	 62.22	0	2020312..2021457	+	381	87199925	-	Saro_1908	-	pyruvate dehydrogenase (lipoamide)
1900	 62.19	0	2021459..2022844	+	461	87199926	-	Saro_1909	-	pyruvate dehydrogenase subunit beta
1901	 59.81	-1	2023108..2023530	-	140	87199927	-	Saro_1910	-	TadE-like
1902	 59.96	-1	2023527..2023988	-	153	87199928	-	Saro_1911	-	TadE-like
1903	 59.63	-1	2023985..2025292	-	435	87199929	-	Saro_1912	-	hypothetical protein
1904	 65.82	0	2025430..2026017	+	195	87199930	-	Saro_1913	-	hypothetical protein
1905	 61.78	-1	2026101..2026571	+	156	87199931	-	Saro_1914	-	hypothetical protein
1906	 63.75	0	2026593..2027963	-	456	87199932	-	Saro_1915	-	tRNA (uracil-5-)-methyltransferase Gid
1907	 61.82	-1	2028031..2028711	+	226	87199933	-	Saro_1916	-	YhhN-like
1908	 62.71	0	2028689..2029042	-	117	87199934	-	Saro_1917	-	hypothetical protein
1909	 65.20	0	2029039..2031765	-	908	87199935	-	Saro_1918	-	DNA gyrase subunit A
1910	 64.59	0	2032081..2033382	+	433	87199936	-	Saro_1919	-	hypothetical protein
1911	 64.59	0	2033469..2034143	-	224	87199937	-	Saro_1920	-	carbonate dehydratase
1912	 63.99	0	2034189..2035121	+	310	87199938	-	Saro_1921	-	lipoyl synthase
1913	 64.50	0	2035124..2035585	+	153	87199939	-	Saro_1922	-	cyclase/dehydrase
1914	 63.89	0	2035546..2036049	-	167	87199940	-	Saro_1923	-	CinA-like
1915	 64.39	0	2036054..2036623	-	189	87199941	-	Saro_1924	-	hypothetical protein
1916	 64.60	0	2036643..2037803	-	386	87199942	ispDF	Saro_1925	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1917	 63.83	0	2037905..2038960	+	351	87199943	-	Saro_1926	-	dihydrouridine synthase TIM-barrel protein nifR3
1918	 63.81	0	2038957..2040078	+	373	87199944	-	Saro_1927	-	signal transduction histidine kinase, nitrogen specific, NtrB
1919	 60.95	-1	2040075..2041508	+	477	87199945	-	Saro_1928	-	two component, sigma54 specific, Fis family transcriptional regulator
1920	 63.17	0	2041595..2043823	+	742	87199946	-	Saro_1929	-	periplasmic sensor signal transduction histidine kinase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.