IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1775	 65.31	0	1881817..1883664	+	615	87199801	-	Saro_1784	-	dihydroxy-acid dehydratase
1776	 66.38	0	1883666..1884019	+	117	87199802	-	Saro_1785	-	hypothetical protein
1777	 70.72	+1	1884003..1885409	+	468	87199803	-	Saro_1786	-	YjeF-related protein-like
1778	 68.91	+1	1885409..1886614	+	401	87199804	-	Saro_1787	-	(Uracil-5)-methyltransferase
1779	 64.34	0	1886619..1887047	-	142	87199805	-	Saro_1788	-	hypothetical protein
1780	 65.29	0	1887082..1887516	-	144	87199806	-	Saro_1789	-	hypothetical protein
1781	 61.19	-1	1887709..1888914	+	401	87199807	-	Saro_1790	-	saccharopine dehydrogenase
1782	 62.96	0	1888914..1889264	+	116	87199808	-	Saro_1791	-	putative transmembrane signal peptide protein
1783	 65.17	0	1889275..1890474	+	399	87199809	-	Saro_1792	-	Orn/DAP/Arg decarboxylase 2
1784	 66.42	0	1890515..1891741	+	408	87199810	-	Saro_1793	-	6-aminohexanoate-dimer hydrolase
1785	 63.52	0	1891915..1893120	+	401	87199811	-	Saro_1794	-	Orn/DAP/Arg decarboxylase 2
1786	 66.41	0	1893193..1893585	-	130	87199812	-	Saro_1795	-	hypothetical protein
1787	 66.08	0	1893626..1894309	-	227	87199813	-	Saro_1796	-	nitroreductase
1788	 63.14	0	1894532..1895752	-	406	87199814	-	Saro_1797	-	5-aminolevulinate synthase
1789	 66.23	0	1895894..1896814	-	306	87199815	-	Saro_1798	-	beta-lactamase-like
1790	 70.14	+1	1896831..1897664	-	277	87199816	-	Saro_1799	-	glutamate racemase
1791	 67.85	0	1897735..1898328	+	197	87199817	-	Saro_1800	-	acyl-phosphate glycerol-3-phosphate acyltransferase
1792	 68.44	0	1898325..1899452	+	375	87199818	-	Saro_1801	-	DNA processing protein DprA, putative
1793	 68.04	0	1899458..1899820	+	120	87199819	-	Saro_1802	-	hypothetical protein
1794	 65.00	0	1899884..1902463	+	859	87199820	-	Saro_1803	-	DNA topoisomerase I
1795	 65.36	0	1902515..1904047	-	510	87199821	-	Saro_1804	-	hypothetical protein
1796	 68.20	0	1904223..1905068	-	281	87199822	-	Saro_1805	-	hypothetical protein
1797	 63.53	0	1905065..1905958	-	297	87199823	era	Saro_1806	-	GTP-binding protein Era
1798	 68.12	0	1906007..1906765	-	252	87199824	-	Saro_1807	-	ribonuclease III
1799	 63.43	0	1906678..1907541	-	287	87199825	-	Saro_1808	-	signal peptidase I
1800	 66.73	0	1907699..1909222	+	507	87199826	-	Saro_1809	-	glucose-6-phosphate isomerase
1801	 64.54	0	1909311..1910672	+	453	87199827	-	Saro_1810	-	NADPH-glutathione reductase
1802	 65.56	0	1910740..1911462	+	240	87199828	-	Saro_1811	-	short-chain dehydrogenase/reductase SDR
1803	 63.20	0	1911497..1912246	-	249	87199829	-	Saro_1812	-	oxidoreductase, molybdopterin binding
1804	 62.89	0	1912243..1913142	-	299	87199830	-	Saro_1813	-	cytochrome B561
1805	 68.83	+1	1913169..1914140	-	323	87199831	-	Saro_1814	-	farnesyl-diphosphate farnesyltransferase
1806	 66.49	0	1914145..1914726	-	193	87199832	-	Saro_1815	-	hypothetical protein
1807	 63.35	0	1914723..1916201	-	492	87199833	-	Saro_1816	-	amine oxidase
1808	 68.09	0	1916198..1917394	-	398	87199834	-	Saro_1817	-	lycopene cyclase
1809	 63.99	0	1917490..1918086	+	198	87199835	-	Saro_1818	-	hypothetical protein
1810	 63.18	0	1918216..1919733	+	505	87199836	-	Saro_1819	-	flavin-containing monooxygenase FMO
1811	 63.59	0	1919909..1921273	-	454	87199837	-	Saro_1820	-	dimethylaniline monooxygenase (N-oxide forming)
1812	 66.02	0	1921284..1922516	-	410	87199838	-	Saro_1821	-	cytochrome P450
1813	 68.93	+1	1922605..1923888	-	427	87199839	-	Saro_1822	-	hypothetical protein
1814	 65.66	0	1923888..1925978	-	696	87199840	-	Saro_1823	-	TonB-dependent siderophore receptor
1815	 63.85	0	1926312..1928192	+	626	87199841	-	Saro_1824	-	thiamine biosynthesis protein ThiC
1816	 63.73	0	1928289..1928696	+	135	87199842	-	Saro_1825	-	glutathione-dependent formaldehyde-activating, GFA
1817	 65.40	0	1928742..1929137	+	131	87199843	-	Saro_1826	-	hypothetical protein
1818	 62.88	0	1929205..1929600	+	131	87199844	-	Saro_1827	-	hypothetical protein
1819	 64.40	0	1929593..1930033	-	146	87199845	-	Saro_1828	-	hypothetical protein
1820	 65.00	0	1930221..1930520	-	99	87199846	-	Saro_1829	-	hypothetical protein
1821	 62.75	0	1930793..1931098	-	101	87199847	-	Saro_1830	-	PhnA protein
1822	 66.53	0	1931151..1931903	-	250	87199848	-	Saro_1831	-	hypothetical protein
1823	 66.67	0	1931908..1932312	-	134	87199849	-	Saro_1832	-	hypothetical protein
1824	 65.75	0	1932309..1932746	-	145	87199850	-	Saro_1833	-	hypothetical protein
1825	 65.15	0	1932781..1933176	-	131	87199851	-	Saro_1834	-	hypothetical protein
1826	 67.62	0	1933469..1934308	-	279	87199852	dapD	Saro_1835	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1827	 62.61	0	1934355..1935044	-	229	87199853	-	Saro_1836	-	pyrimidine 5-nucleotidase
1828	 70.00	+1	1935151..1937463	+	770	87199854	-	Saro_1837	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1829	 67.46	0	1937510..1938643	-	377	87199855	-	Saro_1838	-	glucose sorbosone dehydrogenase
1830	 68.36	0	1938693..1939283	+	196	87199856	-	Saro_1839	-	ribonuclease H
1831	 63.08	0	1939534..1940676	+	380	87199857	-	Saro_1840	-	DNA methylase N-4/N-6
1832	 67.84	0	1940747..1941853	+	368	87199858	-	Saro_1841	-	dihydropteroate synthase
1833	 67.86	0	1941856..1943274	-	472	87199859	-	Saro_1842	-	two component, sigma54 specific, Fis family transcriptional regulator
1834	 65.07	0	1943572..1944699	+	375	87199860	-	Saro_1843	-	alanine dehydrogenase/PNT-like
1835	 60.35	-1	1944711..1944995	+	94	87199861	-	Saro_1844	-	putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein
1836	 64.54	0	1944995..1946407	+	470	87199862	-	Saro_1845	-	NAD(P) transhydrogenase, beta subunit
1837	 68.79	+1	1946407..1946736	+	109	87199863	-	Saro_1846	-	hypothetical protein
1838	 64.21	0	1946888..1947580	+	230	87199864	-	Saro_1847	-	aspartate racemase
1839	 66.92	0	1947716..1948885	+	389	87199865	-	Saro_1848	-	deoxyguanosinetriphosphate triphosphohydrolase
1840	 68.55	+1	1948878..1949567	+	229	87199866	-	Saro_1849	-	NAD-dependent epimerase/dehydratase
1841	 67.44	0	1949880..1951046	+	388	87199867	-	Saro_1850	-	glycine cleavage system aminomethyltransferase T
1842	 64.52	0	1951046..1951417	+	123	87199868	-	Saro_1851	-	glycine cleavage system protein H
1843	 67.03	0	1951422..1952780	+	452	87199869	-	Saro_1852	-	glycine dehydrogenase subunit 1
1844	 67.44	0	1952777..1954336	+	519	87199870	-	Saro_1853	-	glycine dehydrogenase subunit 2
1845	 65.25	0	1954635..1955552	-	305	87199871	-	Saro_1854	-	hypothetical protein
1846	 65.10	0	1955559..1955813	+	84	87199872	-	Saro_1855	-	hypothetical protein
1847	 64.24	0	1955826..1957391	-	521	87199873	-	Saro_1856	-	type II secretion system protein E
1848	 65.56	0	1957674..1958576	+	300	87199874	-	Saro_1857	-	hypothetical protein
1849	 67.26	0	1958674..1959516	-	280	87199875	-	Saro_1858	-	haloacid dehalogenase-like hydrolase
1850	 66.67	0	1959513..1960985	-	490	87199876	-	Saro_1859	-	pyruvate carboxyltransferase
1851	 68.99	+1	1960982..1962316	-	444	87199877	-	Saro_1860	-	carbamoyl-phosphate synthase L chain, ATP-binding
1852	 66.67	0	1962318..1962761	-	147	87199878	-	Saro_1861	-	biotin carboxyl carrier protein
1853	 66.91	0	1962769..1963989	-	406	87199879	-	Saro_1862	-	hypothetical protein
1854	 67.42	0	1964115..1964915	+	266	87199880	-	Saro_1863	-	IclR family transcriptional regulator
1855	 66.96	0	1964998..1966011	+	337	87199881	-	Saro_1864	-	alcohol dehydrogenase
1856	 66.12	0	1966070..1966615	+	181	87199882	-	Saro_1865	-	hypothetical protein
1857	 66.43	0	1966737..1968014	+	425	87199883	-	Saro_1866	-	major facilitator transporter
1858	 65.92	0	1968031..1968969	+	312	87199884	-	Saro_1867	-	AraC family transcriptional regulator
1859	 64.48	0	1969087..1971690	+	867	87199885	-	Saro_1868	-	TonB-dependent receptor
1860	 61.80	-1	1971767..1972300	+	177	87199886	-	Saro_1869	-	2,4'-dihydroxyacetophenone dioxygenase
1861	 61.64	-1	1972326..1972862	+	178	87199887	-	Saro_1870	-	2,4'-dihydroxyacetophenone dioxygenase
1862	 64.04	0	1972870..1973403	+	177	87199888	-	Saro_1871	-	hypothetical protein
1863	 66.85	0	1973414..1974484	+	356	87199889	-	Saro_1872	-	Rieske (2Fe-2S) protein
1864	 65.24	0	1974514..1975353	+	279	87199890	-	Saro_1873	-	short-chain dehydrogenase/reductase SDR
1865	 66.47	0	1975363..1976370	+	335	87199891	-	Saro_1874	-	GroES-related
1866	 64.65	0	1976401..1977243	+	280	87199892	-	Saro_1875	-	short-chain dehydrogenase/reductase SDR
1867	 61.57	-1	1977248..1978189	-	313	87199893	-	Saro_1876	-	intradiol ring-cleavage dioxygenase
1868	 63.11	0	1978421..1979797	+	458	87199894	-	Saro_1877	-	major facilitator transporter
1869	 68.48	0	1979797..1981896	+	699	87199895	-	Saro_1878	-	glycoside hydrolase, clan GH-D
1870	 65.52	0	1981934..1983067	+	377	87199896	-	Saro_1879	-	levansucrase
1871	 66.09	0	1983088..1984122	-	344	87199897	-	Saro_1880	-	LacI family transcription regulator
1872	 62.85	0	1984386..1986902	+	838	87199898	-	Saro_1881	-	TonB-dependent receptor
1873	 64.14	0	1987056..1988561	+	501	87199899	-	Saro_1882	-	tryptophan halogenase
1874	 69.07	+1	1988558..1989931	+	457	87199900	-	Saro_1883	-	TPR repeat-containing protein
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.