IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
112	 61.86	-1	115237..115818	-	193	87198138	-	Saro_0112	-	SSU ribosomal protein S30P / sigma 54 modulation protein
113	 64.07	0	115877..116569	-	230	87198139	-	Saro_0113	-	DNA polymerase III, epsilon subunit
114	 65.18	0	116615..117220	-	201	87198140	-	Saro_0114	-	dephospho-CoA kinase
115	 64.15	0	117217..118089	-	290	87198141	-	Saro_0115	-	shikimate dehydrogenase
116	 62.07	-1	118086..118673	-	195	87198142	-	Saro_0116	-	Maf-like protein
117	 60.85	-1	118670..119512	-	280	87198143	-	Saro_0117	-	hypothetical protein
118	 63.26	0	119850..120875	+	341	87198144	-	Saro_0118	-	uroporphyrinogen decarboxylase
119	 58.45	-2	120973..121398	+	141	87198145	-	Saro_0119	-	hypothetical protein
120	 60.78	-1	121800..123056	+	418	87198146	rho	Saro_0120	-	transcription termination factor Rho
121	 65.77	0	123162..125729	+	855	87198147	-	Saro_0121	-	helicase-like
122	 64.26	0	125747..126037	+	96	87198148	-	Saro_0122	-	RNA-binding S4
123	 60.47	-1	126051..126389	+	112	87198149	-	Saro_0123	-	4Fe-4S ferredoxin, iron-sulfur binding
124	 60.38	-1	126726..127250	+	174	87198150	-	Saro_0124	-	CarD family transcriptional regulator
125	 63.74	0	127423..128208	+	261	87198151	-	Saro_0125	-	hypothetical protein
126	 66.67	0	128212..129159	-	315	87198152	-	Saro_0126	-	translation factor SUA5
127	 64.81	0	129220..130938	+	572	87198153	-	Saro_0127	-	acyl-CoA dehydrogenase-like
128	 66.30	0	130935..131750	+	271	87198154	-	Saro_0128	-	hypothetical protein
129	 63.21	0	131784..133289	-	501	87198155	-	Saro_0129	-	L-sorbosone dehydrogenase
130	 64.18	0	133354..133836	+	160	87198156	-	Saro_0130	-	putative GAF sensor protein
131	 65.52	0	133981..134679	+	232	87198157	-	Saro_0131	-	17 kDa surface antigen
132	 61.30	-1	134788..135942	-	384	87198158	-	Saro_0132	-	long-chain acyl-CoA dehydrogenase
133	 66.67	0	136094..137041	-	315	87198159	-	Saro_0133	-	chromosome segregation DNA-binding protein
134	 61.90	-1	137038..137814	-	258	87198160	-	Saro_0134	-	chromosome segregation ATPase
135	 60.75	-1	137811..138503	-	230	87198161	-	Saro_0135	-	methyltransferase GidB
136	 65.81	0	138500..140359	-	619	87198162	-	Saro_0136	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
137	 68.34	0	140445..141758	-	437	87198163	trmE	Saro_0137	-	tRNA modification GTPase TrmE
138	 60.92	-1	141791..142051	-	86	87198164	-	Saro_0138	-	hypothetical protein
139	 61.66	-1	142162..142860	+	232	87198165	-	Saro_0139	-	carboxymethylenebutenolidase
140	 60.72	-1	142956..143342	+	128	87198166	-	Saro_0140	-	hypothetical protein
141	 66.38	0	143400..143744	-	114	87198167	-	Saro_0141	-	DNA-directed RNA polymerase subunit omega
142	 65.21	0	143844..145358	-	504	87198168	-	Saro_0142	-	replicative DNA helicase
143	 60.61	-1	145505..145999	+	164	87198169	-	Saro_0143	-	hypothetical protein
144	 66.81	0	146028..146723	+	231	87198170	-	Saro_0144	-	glycoside hydrolase family protein
145	 67.81	0	146720..147157	+	145	87198171	-	Saro_0145	-	cytidine deaminase
146	 60.72	-1	147206..147760	+	184	87198172	dcd	Saro_0146	-	deoxycytidine triphosphate deaminase
147	 67.35	0	147894..149066	+	390	87198173	-	Saro_0147	-	saccharopine dehydrogenase
148	 61.30	-1	149157..149603	-	148	87198174	-	Saro_0148	-	globin
149	 64.88	0	149630..150133	+	167	87198175	-	Saro_0149	-	BadM/Rrf2 family transcriptional regulator
150	 70.65	+1	150130..150531	-	133	87198176	-	Saro_0150	-	hypothetical protein
151	 66.87	0	150718..151713	+	331	87198177	-	Saro_0151	-	PfkB
152	 67.35	0	151725..153050	-	441	87198178	-	Saro_0152	-	aminopeptidase P
153	 64.34	0	153225..153653	-	142	87198179	-	Saro_0153	-	signal-transduction protein
154	 61.22	-1	153797..154090	+	97	87198180	-	Saro_0154	-	hypothetical protein
155	 67.68	0	154071..154466	+	131	87198181	-	Saro_0155	-	HesB/YadR/YfhF
156	 62.69	0	154525..155304	+	259	87198182	-	Saro_0156	-	exodeoxyribonuclease III
157	 65.90	0	155351..155611	+	86	87198183	-	Saro_0157	-	hypothetical protein
158	 64.90	0	155613..156290	+	225	87198184	-	Saro_0158	-	methionine sulfoxide reductase A
159	 63.69	0	156327..156797	+	156	87198185	-	Saro_0159	-	transcriptional regulator
160	 66.20	0	156827..158104	+	425	87198186	-	Saro_0160	-	general substrate transporter
161	 65.16	0	158147..160069	+	640	87198187	-	Saro_0161	-	1-deoxy-D-xylulose-5-phosphate synthase
162	 62.70	0	160099..160779	-	226	87198188	-	Saro_0162	-	NnrU
163	 62.85	0	160892..163015	-	707	87198189	-	Saro_0163	-	amino acid/peptide transporter
164	 64.36	0	163049..163438	+	129	87198190	-	Saro_0164	-	GntR family transcriptional regulator
165	 63.48	0	163591..163872	+	93	87198191	-	Saro_0165	-	histone-like DNA-binding protein
166	 63.62	0	164436..165092	+	218	87198192	-	Saro_0166	-	hypothetical protein
167	 64.49	0	165119..166585	-	488	87198193	-	Saro_0167	-	sulfotransferase
168	 62.23	0	166719..169919	-	1066	87198194	-	Saro_0168	-	TonB-dependent receptor
169	 68.07	0	170278..171132	-	284	87198195	-	Saro_0169	-	peptidase M23B
170	 63.73	0	171151..171354	-	67	87198196	-	Saro_0170	-	hypothetical protein
171	 70.19	+1	171381..172742	-	453	87198197	-	Saro_0171	-	exodeoxyribonuclease VII large subunit
172	 65.50	0	172861..174150	+	429	87198198	-	Saro_0172	-	phosphoribosylamine--glycine ligase
173	 65.08	0	174140..174769	-	209	87198199	-	Saro_0173	-	isochorismatase hydrolase
174	 65.75	0	174769..175971	-	400	87198200	-	Saro_0174	-	succinyl-CoA:(R)-citramalate CoA-transferase
175	 63.91	0	175968..177854	-	628	87198201	-	Saro_0175	-	5-oxoprolinase (ATP-hydrolyzing)
176	 66.18	0	177868..179916	-	682	87198202	-	Saro_0176	-	5-oxoprolinase (ATP-hydrolyzing)
177	 68.85	+1	179921..180835	-	304	87198203	-	Saro_0177	-	hydroxymethylglutaryl-CoA lyase
178	 63.58	0	181101..183626	+	841	87198204	-	Saro_0178	-	TonB-dependent receptor
179	 65.74	0	183684..184328	+	214	87198205	-	Saro_0179	-	GntR family transcriptional regulator
180	 61.48	-1	184339..184839	-	166	87198206	-	Saro_0180	-	hemerythrin HHE cation binding region protein
181	 67.04	0	184945..185745	+	266	87198207	-	Saro_0181	-	phosphoglycerate/bisphosphoglycerate mutase
182	 70.41	+1	185738..186619	+	293	87198208	-	Saro_0182	-	hypothetical protein
183	 65.63	0	186588..186974	-	128	87198209	-	Saro_0183	-	ferredoxin-like
184	 66.24	0	186971..189067	-	698	87198210	-	Saro_0184	-	peptidase S9, prolyl oligopeptidase active site region
185	 64.84	0	189125..189562	-	145	87198211	-	Saro_0185	-	hypothetical protein
186	 68.04	0	189604..191061	-	485	87198212	-	Saro_0186	-	Type I secretion outer membrane protein, TolC
187	 69.36	+1	191067..191660	-	197	87198213	-	Saro_0187	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
188	 65.03	0	191828..193351	+	507	87198214	-	Saro_0188	-	fumarase
189	 68.12	0	193439..195367	+	642	87198215	-	Saro_0189	-	histidine kinase internal region
190	 68.03	0	195378..196112	+	244	87198216	-	Saro_0190	-	LytR/AlgR family transcriptional regulator
191	 64.41	0	196166..197983	-	605	87198217	-	Saro_0191	-	AMP-dependent synthetase and ligase
192	 69.63	+1	198104..199855	-	583	87198218	-	Saro_0192	-	gamma-glutamyltransferase 1
193	 68.29	0	199866..200915	-	349	87198219	-	Saro_0193	-	dihydroorotate dehydrogenase 2
194	 69.61	+1	201349..201789	+	146	87198220	-	Saro_0194	-	BadM/Rrf2 family transcriptional regulator
195	 62.69	0	201786..203267	+	493	87198221	-	Saro_0195	-	cysteine desulfurase activator complex subunit SufB
196	 68.20	0	203407..203928	+	173	87198222	-	Saro_0196	-	hypothetical protein
197	 64.38	0	203940..204683	+	247	87198223	-	Saro_0197	-	FeS assembly ATPase SufC
198	 68.57	+1	204680..205414	+	244	87198224	-	Saro_0198	-	SufBD
199	 68.40	0	205411..206622	+	403	87198225	-	Saro_0199	-	SufS subfamily cysteine desulfurase
200	 64.18	0	206619..207101	+	160	87198226	-	Saro_0200	-	hypothetical protein
201	 65.29	0	207125..207487	+	120	87198227	-	Saro_0201	-	HesB/YadR/YfhF
202	 69.89	+1	208948..209598	-	216	87198228	-	Saro_0203	-	hypothetical protein
203	 65.76	0	209688..211682	-	664	87198229	-	Saro_0204	-	threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
204	 66.78	0	212005..212925	+	306	87198230	-	Saro_0205	-	short-chain dehydrogenase/reductase SDR
205	 67.87	0	213013..213429	+	138	87198231	-	Saro_0206	-	hypothetical protein
206	 63.54	0	213426..213617	+	63	87198232	-	Saro_0207	-	XRE family transcriptional regulator
207	 69.08	+1	213651..214397	+	248	87198233	-	Saro_0208	-	alpha/beta hydrolase
208	 68.91	+1	214390..215325	+	311	87198234	-	Saro_0209	-	tetratricopeptide TPR_4
209	 67.98	0	215322..216314	+	330	87198235	-	Saro_0210	-	luciferase-like
210	 68.74	+1	216557..221278	+	1573	87198236	-	Saro_0211	-	glutamate dehydrogenase (NAD)
211	 72.27	+2	221359..222126	+	255	87198237	-	Saro_0212	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.