IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1447	 66.82	0	1497036..1498343	+	435	87199473	-	Saro_1452	-	DNA methylase N-4/N-6
1448	 64.78	0	1498340..1498870	+	176	87199474	-	Saro_1453	-	hypothetical protein
1449	 69.71	+1	1498867..1499457	+	196	87199475	-	Saro_1454	-	hypothetical protein
1450	 56.50	-2	1499809..1500054	+	81	87199476	-	Saro_1456	-	hypothetical protein
1451	 64.72	0	1500172..1501404	+	410	87199477	-	Saro_1457	-	integrase
1452	 64.57	0	1501401..1502258	+	285	87199478	-	Saro_1458	-	IstB-like ATP-binding protein
1453	 60.33	-1	1502365..1502853	+	162	87199479	-	Saro_1459	-	IS6 family transposase
1454	 60.68	-1	1502832..1503332	+	166	87199480	-	Saro_1460	-	transposase
1455	 64.69	0	1503407..1503913	-	168	87199481	-	Saro_1461	-	hypothetical protein
1456	 67.63	0	1503934..1504452	-	172	87199482	-	Saro_1462	-	flavin reductase-like, FMN-binding
1457	 66.41	0	1504449..1505219	-	256	87199483	-	Saro_1463	-	short chain enoyl-CoA hydratase
1458	 66.90	0	1505223..1506062	-	279	87199484	-	Saro_1464	-	enoyl-CoA hydratase/isomerase
1459	 58.89	-1	1506059..1506508	-	149	87199485	-	Saro_1465	-	hypothetical protein
1460	 62.27	0	1506540..1506812	+	90	87199486	-	Saro_1466	-	hypothetical protein
1461	 65.44	0	1506861..1507511	+	216	87199487	-	Saro_1467	-	hypothetical protein
1462	 60.76	-1	1507606..1508706	-	366	87199488	-	Saro_1468	-	luciferase-like
1463	 59.83	-1	1508743..1509897	-	384	87199489	-	Saro_1469	-	luciferase-like
1464	 61.08	-1	1510080..1511672	+	530	87199490	-	Saro_1470	-	AMP-dependent synthetase and ligase
1465	 57.88	-2	1511678..1512337	-	219	87199491	-	Saro_1471	-	TetR family transcriptional regulator
1466	 60.89	-1	1512739..1513257	+	172	87199492	-	Saro_1472	-	hypothetical protein
1467	 59.84	-1	1513254..1514396	+	380	87199493	-	Saro_1473	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
1468	 57.05	-2	1514632..1517085	+	817	87199494	-	Saro_1474	-	TonB-dependent receptor
1469	 54.31	-2	1517212..1518012	+	266	87199495	-	Saro_1475	-	short-chain dehydrogenase/reductase SDR
1470	 62.51	0	1518089..1519171	-	360	87199496	-	Saro_1476	-	alcohol dehydrogenase, zinc-containing
1471	 61.71	-1	1519205..1519567	-	120	87199497	-	Saro_1477	-	ferredoxin
1472	 60.93	-1	1519557..1520810	-	417	87199498	-	Saro_1478	-	cytochrome P450
1473	 61.90	-1	1520981..1521694	+	237	87199499	-	Saro_1479	-	MerR family transcriptional regulator
1474	 64.61	0	1521727..1523376	-	549	87199500	-	Saro_1480	-	cyclohexanone monooxygenase
1475	 59.41	-1	1523603..1524319	+	238	87199501	-	Saro_1481	-	transposase
1476	 56.22	-2	1524528..1525274	-	248	87199502	-	Saro_1482	-	XRE family transcriptional regulator
1477	 58.40	-2	1525404..1526213	+	269	87199503	-	Saro_1483	-	phytanoyl-CoA dioxygenase
1478	 56.18	-2	1526248..1526724	+	158	87199504	-	Saro_1484	-	hypothetical protein
1479	 59.27	-1	1526794..1527510	+	238	87199505	-	Saro_1485	-	transposase
1480	 55.37	-2	1527910..1528980	-	356	87199506	-	Saro_1487	-	Rieske (2Fe-2S) protein
1481	 58.71	-2	1529171..1530226	-	351	87199507	-	Saro_1488	-	Rieske (2Fe-2S) protein
1482	 57.64	-2	1530312..1532891	-	859	87199508	-	Saro_1489	-	TonB-dependent receptor
1483	 62.59	0	1532918..1534144	-	408	87199509	-	Saro_1490	-	FAD linked oxidase-like
1484	 62.42	0	1534155..1534484	-	109	87199510	-	Saro_1491	-	cytochrome c, class I
1485	 60.51	-1	1534481..1536040	-	519	87199511	-	Saro_1492	-	vanillyl-alcohol oxidase
1486	 62.14	0	1536037..1536588	-	183	87199512	-	Saro_1493	-	twin-arginine translocation pathway signal
1487	 58.43	-2	1536757..1538481	-	574	87199513	-	Saro_1494	-	Fis family transcriptional regulator
1488	 59.27	-1	1538674..1539390	+	238	87199514	-	Saro_1495	-	transposase
1489	 64.38	0	1539881..1540711	-	276	87199515	-	Saro_1497	-	hypothetical protein
1490	 61.57	-1	1540830..1542164	+	444	87199516	-	Saro_1498	-	di- and tricarboxylate transporters-like
1491	 60.84	-1	1542170..1543456	-	428	87199517	-	Saro_1499	-	osmosensitive K+ channel histidine kinase-like
1492	 62.52	0	1543701..1545002	+	433	87199518	-	Saro_1500	-	Cl- channel, voltage gated
1493	 59.40	-1	1545008..1545943	-	311	87199519	-	Saro_1501	-	LysR family transcriptional regulator
1494	 63.72	0	1546358..1546900	+	180	87199520	-	Saro_1502	-	hypothetical protein
1495	 64.14	0	1547027..1547737	+	236	87199521	-	Saro_1503	-	HAD family hydrolase
1496	 65.15	0	1547734..1549518	+	594	87199522	-	Saro_1504	-	glycoside hydrolase 15-related
1497	 62.01	-1	1549515..1550909	+	464	87199523	-	Saro_1505	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1498	 60.67	-1	1551018..1551734	+	238	87199524	-	Saro_1506	-	transposase
1499	 59.00	-1	1552191..1552529	+	112	87199525	-	Saro_1507	-	hypothetical protein
1500	 58.45	-2	1552530..1552967	-	145	87199526	-	Saro_1508	-	hypothetical protein
1501	 57.95	-2	1553048..1553437	-	129	87199527	-	Saro_1509	-	hypothetical protein
1502	 60.59	-1	1553514..1554188	-	224	87199528	-	Saro_1510	-	two component transcriptional regulator
1503	 64.93	0	1554185..1555621	-	478	87199529	-	Saro_1511	-	periplasmic sensor signal transduction histidine kinase
1504	 61.89	-1	1555630..1557534	-	634	87199530	-	Saro_1512	-	K+ potassium transporter
1505	 59.10	-1	1557945..1558790	-	281	87199531	-	Saro_1513	-	hypothetical protein
1506	 57.14	-2	1559005..1559424	-	139	87199532	-	Saro_1514	-	hypothetical protein
1507	 62.20	0	1559822..1560604	+	260	87199533	-	Saro_1515	-	Flp pilus assembly CpaB
1508	 60.55	-1	1560594..1562147	+	517	87199534	-	Saro_1516	-	type II and III secretion system protein
1509	 61.46	-1	1562137..1562424	+	95	87199535	-	Saro_1517	-	hypothetical protein
1510	 59.95	-1	1562441..1564003	+	520	87199536	-	Saro_1518	-	hypothetical protein
1511	 61.42	-1	1564000..1564533	+	177	87199537	-	Saro_1519	-	TadE-like
1512	 56.67	-2	1564530..1565159	+	209	87199538	-	Saro_1520	-	TadE-like
1513	 59.40	-1	1565208..1566404	+	398	87199539	-	Saro_1521	-	Flp pilus assembly protein ATPase CpaE-like
1514	 59.33	-1	1566401..1567804	+	467	87199540	-	Saro_1522	-	type II secretion system protein E
1515	 59.37	-1	1567809..1568795	+	328	87199541	-	Saro_1523	-	type II secretion system protein
1516	 58.93	-1	1568798..1569766	+	322	87199542	-	Saro_1524	-	type II secretion system protein
1517	 59.70	-1	1569771..1570430	+	219	87199543	-	Saro_1525	-	TPR repeat-containing protein
1518	 58.23	-2	1570451..1570924	+	157	87199544	-	Saro_1526	-	peptidase A24A, prepilin type IV
1519	 47.80	-2	1570927..1571700	-	257	87199545	-	Saro_1527	-	regulatory proteins, IclR
1520	 62.31	0	1571775..1572164	-	129	87199546	-	Saro_1528	-	IS4 family transposase
1521	 62.93	0	1572185..1572532	-	115	87199547	-	Saro_1529	-	IS5 family transposase
1522	 58.16	-2	1573114..1574736	-	540	87199548	-	Saro_1530	-	flavin-containing monooxygenase FMO
1523	 63.66	0	1574831..1576426	-	531	87199549	-	Saro_1531	-	acyl-CoA synthetase
1524	 59.35	-1	1576437..1577201	-	254	87199550	-	Saro_1532	-	enoyl-CoA hydratase
1525	 58.90	-1	1577488..1579650	+	720	87199551	-	Saro_1533	-	TonB-dependent receptor
1526	 61.47	-1	1579840..1580724	-	294	87199552	-	Saro_1534	-	alpha/beta hydrolase
1527	 61.11	-1	1580914..1582263	+	449	87199553	-	Saro_1535	-	major facilitator transporter
1528	 66.67	0	1582448..1583209	+	253	87199554	-	Saro_1536	-	hypothetical protein
1529	 64.76	0	1583247..1584665	+	472	87199555	-	Saro_1537	-	hypothetical protein
1530	 63.45	0	1584662..1587898	+	1078	87199556	-	Saro_1538	-	DNA polymerase III, alpha subunit
1531	 64.86	0	1587982..1589310	-	442	87199557	-	Saro_1539	-	FAD dependent oxidoreductase
1532	 63.94	0	1589321..1590565	-	414	87199558	-	Saro_1540	-	major facilitator transporter
1533	 62.33	0	1590650..1591225	+	191	87199559	-	Saro_1541	-	TetR family transcriptional regulator
1534	 62.86	0	1591258..1593597	-	779	87199560	-	Saro_1542	-	TonB-dependent receptor
1535	 64.03	0	1593855..1595447	+	530	87199561	-	Saro_1543	-	glucose-methanol-choline oxidoreductase
1536	 66.30	0	1598538..1599911	+	457	87199562	-	Saro_1545	-	major facilitator transporter
1537	 62.78	0	1599944..1600894	+	316	87199563	-	Saro_1546	-	taurine dioxygenase
1538	 61.84	-1	1601033..1601923	-	296	87199564	-	Saro_1547	-	RpiR family transcriptional regulator
1539	 60.98	-1	1602156..1604336	+	726	87199565	-	Saro_1548	-	TonB-dependent receptor
1540	 63.62	0	1604434..1605384	+	316	87199566	-	Saro_1549	-	phosphonate-binding periplasmic protein
1541	 65.15	0	1605381..1606103	+	240	87199567	-	Saro_1550	-	ABC transporter related
1542	 65.62	0	1606100..1607053	+	317	87199568	-	Saro_1551	-	phosphonate ABC transporter permease
1543	 64.15	0	1607077..1609185	+	702	87199569	-	Saro_1552	-	twin-arginine translocation pathway signal
1544	 62.95	0	1609227..1610573	-	448	87199570	-	Saro_1553	-	putative GAF sensor protein
1545	 64.83	0	1610570..1611058	-	162	87199571	-	Saro_1554	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1546	 61.90	-1	1611187..1612068	+	293	87199572	-	Saro_1555	-	N-acetyltransferase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.