IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1365	 64.62	0	1417409..1418335	+	308	87199391	tsf	Saro_1370	-	elongation factor Ts
1366	 62.99	0	1418481..1419215	+	244	87199392	-	Saro_1371	-	uridylate kinase
1367	 63.08	0	1419217..1419774	+	185	87199393	-	Saro_1372	-	ribosome recycling factor
1368	 64.56	0	1419771..1420481	+	236	87199394	-	Saro_1373	-	undecaprenyl pyrophosphate synthetase
1369	 65.06	0	1420471..1421217	+	248	87199395	-	Saro_1374	-	phosphatidate cytidylyltransferase
1370	 67.53	0	1421222..1422379	+	385	87199396	-	Saro_1375	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1371	 63.01	0	1422393..1423514	+	373	87199397	-	Saro_1376	-	peptidase RseP
1372	 63.39	0	1423743..1426460	+	905	87199398	-	Saro_1377	-	surface antigen (D15)
1373	 65.94	0	1426460..1427143	+	227	87199399	-	Saro_1378	-	hypothetical protein
1374	 64.15	0	1427166..1427642	+	158	87199400	-	Saro_1379	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1375	 61.78	-1	1427743..1427967	+	74	87199401	rpmE	Saro_1380	-	50S ribosomal protein L31
1376	 66.67	0	1428104..1428544	+	146	87199402	-	Saro_1381	-	MarR family transcriptional regulator
1377	 62.89	0	1428555..1429190	-	211	87199403	-	Saro_1382	-	2OG-Fe(II) oxygenase
1378	 68.15	0	1429345..1429749	+	134	87199404	-	Saro_1383	-	general secretion pathway protein H
1379	 70.80	+1	1429739..1430173	+	144	87199405	-	Saro_1384	-	general secretion pathway protein I
1380	 69.51	+1	1430170..1430766	+	198	87199406	-	Saro_1385	-	general secretion pathway protein J
1381	 67.58	0	1430763..1431749	+	328	87199407	-	Saro_1386	-	general secretion pathway protein K
1382	 65.98	0	1432097..1432825	+	242	87199408	-	Saro_1387	-	heme exporter protein CcmC
1383	 65.96	0	1432833..1432973	+	46	87199409	-	Saro_1388	-	hypothetical protein
1384	 64.54	0	1432970..1433440	+	156	87199410	-	Saro_1389	-	cytochrome c-type biogenesis protein CcmE
1385	 66.11	0	1433437..1435404	+	655	87199411	-	Saro_1390	-	cytochrome c assembly protein
1386	 66.67	0	1435401..1435952	+	183	87199412	-	Saro_1391	-	periplasmic protein thiol
1387	 67.35	0	1435949..1436389	+	146	87199413	-	Saro_1392	-	cytochrome C biogenesis protein
1388	 68.81	+1	1436386..1437084	+	232	87199414	-	Saro_1393	-	tetratricopeptide TPR_4
1389	 63.79	0	1437252..1439198	+	648	87199415	-	Saro_1394	-	K+ potassium transporter
1390	 64.92	0	1439353..1440267	+	304	87199416	-	Saro_1395	-	signal transduction histidine kinase
1391	 62.99	0	1440264..1440617	+	117	87199417	-	Saro_1396	-	response regulator receiver domain-containing protein
1392	 64.38	0	1440684..1440989	-	101	87199418	-	Saro_1397	-	outer membrane protein
1393	 62.48	0	1441218..1441790	-	190	87199419	-	Saro_1398	-	hypothetical protein
1394	 61.82	-1	1441908..1442567	-	219	87199420	-	Saro_1399	-	intracellular septation protein A
1395	 67.10	0	1442564..1443490	-	308	87199421	-	Saro_1400	-	signal recognition particle-docking protein FtsY
1396	 65.58	0	1443487..1444683	-	398	87199422	-	Saro_1401	-	MiaB-like tRNA modifying enzyme
1397	 66.55	0	1444680..1445507	-	275	87199423	-	Saro_1402	-	diaminopimelate epimerase
1398	 64.38	0	1445564..1447267	-	567	87199424	-	Saro_1403	-	diguanylate cyclase/phosphodiesterase
1399	 66.06	0	1447540..1449015	+	491	87199425	-	Saro_1404	-	signal recognition particle subunit FFH/SRP54 (srp54)
1400	 67.12	0	1449064..1449501	+	145	87199426	rpsP	Saro_1405	-	30S ribosomal protein S16
1401	 65.87	0	1449504..1450004	+	166	87199427	-	Saro_1406	-	16S rRNA processing protein RimM
1402	 65.72	0	1450001..1450741	+	246	87199428	-	Saro_1407	-	tRNA (Guanine37-N1) methyltransferase
1403	 60.98	-1	1450745..1451113	+	122	87199429	rplS	Saro_1408	-	50S ribosomal protein L19
1404	 64.37	0	1451278..1453542	+	754	87199430	-	Saro_1409	-	dipeptidyl-peptidase IV
1405	 62.67	0	1453782..1454807	+	341	87199431	-	Saro_1410	-	aspartate-semialdehyde dehydrogenase
1406	 65.08	0	1454816..1455571	+	251	87199432	-	Saro_1411	-	alpha/beta hydrolase
1407	 60.59	-1	1455670..1456146	+	158	87199433	-	Saro_1412	-	hypothetical protein
1408	 66.26	0	1456240..1457724	-	494	87199434	-	Saro_1413	-	AMP nucleosidase
1409	 62.83	0	1457796..1458395	-	199	87199435	rplI	Saro_1414	-	50S ribosomal protein L9
1410	 62.67	0	1458408..1458632	-	74	87199436	rpsR	Saro_1415	-	30S ribosomal protein S18
1411	 62.53	0	1458636..1458998	-	120	87199437	rpsF	Saro_1416	-	30S ribosomal protein S6
1412	 68.21	0	1459207..1459983	+	258	87199438	-	Saro_1417	-	enoyl-CoA hydratase
1413	 67.37	0	1460006..1460431	+	141	87199439	-	Saro_1418	-	putative hydroxylaminobenzene mutase HAB
1414	 66.41	0	1460403..1461563	-	386	87199440	-	Saro_1419	-	acyltransferase 3
1415	 64.58	0	1461592..1461879	-	95	87199441	-	Saro_1420	-	antibiotic biosynthesis monooxygenase
1416	 65.70	0	1462057..1464231	+	724	87199442	-	Saro_1421	-	diguanylate cyclase/phosphodiesterase
1417	 66.46	0	1464323..1465267	+	314	87199443	-	Saro_1422	-	hypothetical protein
1418	 63.11	0	1465280..1465645	-	121	87199444	-	Saro_1423	-	hypothetical protein
1419	 64.98	0	1465845..1466378	+	177	87199445	-	Saro_1424	-	GCN5-related N-acetyltransferase
1420	 65.83	0	1466398..1467825	-	475	87199446	-	Saro_1425	-	UDP-N-acetylmuramate--L-alanine ligase
1421	 65.33	0	1467912..1468733	+	273	87199447	-	Saro_1426	-	peptidase U61, LD-carboxypeptidase A
1422	 65.71	0	1468791..1469726	+	311	87199448	-	Saro_1427	-	[Acyl-carrier-protein] S-malonyltransferase
1423	 65.62	0	1469732..1470496	+	254	87199449	-	Saro_1428	-	3-oxoacyl-[acyl-carrier-protein] reductase
1424	 62.77	0	1470682..1471809	+	375	87199450	-	Saro_1429	-	DNA polymerase III subunit beta
1425	 63.55	0	1471981..1473426	+	481	87199451	-	Saro_1430	-	methyl-accepting chemotaxis sensory transducer
1426	 64.69	0	1473435..1474448	-	337	87199452	-	Saro_1431	-	alcohol dehydrogenase
1427	 63.87	0	1474448..1476196	-	582	87199453	-	Saro_1432	-	hypothetical protein
1428	 64.60	0	1476300..1477604	-	434	87199454	-	Saro_1433	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1429	 63.74	0	1477676..1478461	-	261	87199455	-	Saro_1434	-	alpha/beta hydrolase
1430	 63.58	0	1478581..1481271	+	896	87199456	-	Saro_1435	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1431	 62.87	0	1481281..1482570	-	429	87199457	-	Saro_1436	-	hypothetical protein
1432	 62.05	-1	1482804..1483475	+	223	87199458	-	Saro_1437	-	hypothetical protein
1433	 66.27	0	1483542..1484039	-	165	87199459	-	Saro_1438	-	hypothetical protein
1434	 62.05	-1	1484036..1484230	-	64	87199460	-	Saro_1439	-	hypothetical protein
1435	 63.49	0	1484230..1484859	-	209	87199461	-	Saro_1440	-	phosphoglycerate/bisphosphoglycerate mutase
1436	 64.48	0	1484877..1485425	-	182	87199462	-	Saro_1441	-	GreA/GreB family elongation factor
1437	 65.92	0	1485464..1487482	-	672	87199463	-	Saro_1442	-	lytic transglycosylase, catalytic
1438	 63.97	0	1487581..1488471	+	296	87199464	-	Saro_1443	-	dihydrodipicolinate synthase
1439	 58.18	-2	1488542..1489024	+	160	87199465	smpB	Saro_1444	-	SsrA-binding protein
1440	 65.95	0	1489133..1489693	+	186	87199466	-	Saro_1445	-	hypothetical protein
1441	 63.42	0	1489693..1492128	+	811	87199467	-	Saro_1446	-	multi-sensor hybrid histidine kinase
1442	 61.11	-1	1492505..1492810	-	101	87199468	-	Saro_1447	-	hypothetical protein
1443	 62.34	0	1492815..1493807	-	330	87199469	-	Saro_1448	-	peptidyl-prolyl cis-trans isomerase
1444	 67.50	0	1494442..1496010	-	522	87199470	-	Saro_1449	-	resolvase-like protein
1445	 68.80	+1	1496007..1496474	-	155	87199471	-	Saro_1450	-	hypothetical protein
1446	 70.07	+1	1496474..1496884	-	136	87199472	-	Saro_1451	-	hypothetical protein
1447	 66.82	0	1497036..1498343	+	435	87199473	-	Saro_1452	-	DNA methylase N-4/N-6
1448	 64.78	0	1498340..1498870	+	176	87199474	-	Saro_1453	-	hypothetical protein
1449	 69.71	+1	1498867..1499457	+	196	87199475	-	Saro_1454	-	hypothetical protein
1450	 56.50	-2	1499809..1500054	+	81	87199476	-	Saro_1456	-	hypothetical protein
1451	 64.72	0	1500172..1501404	+	410	87199477	-	Saro_1457	-	integrase
1452	 64.57	0	1501401..1502258	+	285	87199478	-	Saro_1458	-	IstB-like ATP-binding protein
1453	 60.33	-1	1502365..1502853	+	162	87199479	-	Saro_1459	-	IS6 family transposase
1454	 60.68	-1	1502832..1503332	+	166	87199480	-	Saro_1460	-	transposase
1455	 64.69	0	1503407..1503913	-	168	87199481	-	Saro_1461	-	hypothetical protein
1456	 67.63	0	1503934..1504452	-	172	87199482	-	Saro_1462	-	flavin reductase-like, FMN-binding
1457	 66.41	0	1504449..1505219	-	256	87199483	-	Saro_1463	-	short chain enoyl-CoA hydratase
1458	 66.90	0	1505223..1506062	-	279	87199484	-	Saro_1464	-	enoyl-CoA hydratase/isomerase
1459	 58.89	-1	1506059..1506508	-	149	87199485	-	Saro_1465	-	hypothetical protein
1460	 62.27	0	1506540..1506812	+	90	87199486	-	Saro_1466	-	hypothetical protein
1461	 65.44	0	1506861..1507511	+	216	87199487	-	Saro_1467	-	hypothetical protein
1462	 60.76	-1	1507606..1508706	-	366	87199488	-	Saro_1468	-	luciferase-like
1463	 59.83	-1	1508743..1509897	-	384	87199489	-	Saro_1469	-	luciferase-like
1464	 61.08	-1	1510080..1511672	+	530	87199490	-	Saro_1470	-	AMP-dependent synthetase and ligase
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.