IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1303	 66.67	0	1352014..1352343	-	109	87199329	-	Saro_1308	-	hypothetical protein
1304	 66.59	0	1352436..1353752	-	438	87199330	-	Saro_1309	-	adenylosuccinate lyase
1305	 69.88	+1	1353867..1355732	-	621	87199331	-	Saro_1310	-	acyltransferase 3
1306	 65.99	0	1356054..1356791	-	245	87199332	-	Saro_1311	-	DNA repair protein RadC
1307	 69.17	+1	1356877..1360107	+	1076	87199333	-	Saro_1312	-	hypothetical protein
1308	 61.84	-1	1360155..1360361	+	68	87199334	-	Saro_1313	-	hypothetical protein
1309	 68.63	+1	1360382..1360789	+	135	87199335	-	Saro_1314	-	hypothetical protein
1310	 62.62	0	1360997..1361317	+	106	87199336	-	Saro_1315	-	putative ATP synthase protein I
1311	 60.54	-1	1361358..1362140	+	260	87199337	-	Saro_1316	-	F0F1 ATP synthase subunit A
1312	 66.67	0	1362189..1362416	+	75	87199338	-	Saro_1317	-	H+-transporting two-sector ATPase, C subunit
1313	 67.88	0	1362491..1362985	+	164	87199339	-	Saro_1318	-	H+-transporting two-sector ATPase, B/B' subunit
1314	 66.67	0	1362978..1363532	+	184	87199340	-	Saro_1319	-	H+-transporting two-sector ATPase, B/B' subunit
1315	 67.64	0	1363722..1364750	-	342	87199341	-	Saro_1320	-	LacI family transcription regulator
1316	 68.89	+1	1364792..1365556	-	254	87199342	-	Saro_1321	-	hydroxyacylglutathione hydrolase
1317	 65.43	0	1365649..1367349	-	566	87199343	rpsA	Saro_1322	-	30S ribosomal protein S1
1318	 48.58	-2	1367634..1368020	-	128	87199344	-	Saro_1323	-	hypothetical protein
1319	 69.22	+1	1368133..1368759	-	208	87199345	-	Saro_1324	-	cytidylate kinase
1320	 62.75	0	1368756..1369010	-	84	87199346	-	Saro_1325	-	putative permease
1321	 70.14	+1	1369010..1370335	-	441	87199347	-	Saro_1326	-	3-phosphoshikimate 1-carboxyvinyltransferase
1322	 61.01	-1	1370546..1370863	+	105	87199348	-	Saro_1327	-	hypothetical protein
1323	 68.32	0	1371271..1371876	+	201	87199349	-	Saro_1328	-	hypothetical protein
1324	 64.54	0	1371876..1372580	+	234	87199350	-	Saro_1329	-	hypothetical protein
1325	 66.03	0	1372662..1373597	-	311	87199351	-	Saro_1330	-	2OG-Fe(II) oxygenase
1326	 63.51	0	1373662..1374105	+	147	87199352	-	Saro_1331	-	hypothetical protein
1327	 66.12	0	1374166..1374348	+	60	87199353	-	Saro_1332	-	CsbD-like
1328	 63.48	0	1374493..1374774	+	93	87199354	-	Saro_1333	-	hypothetical protein
1329	 62.59	0	1374764..1376086	-	440	87199355	-	Saro_1334	-	major facilitator transporter
1330	 62.96	0	1376224..1376817	+	197	87199356	-	Saro_1335	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1331	 68.23	0	1376843..1377739	-	298	87199357	-	Saro_1336	-	LysR family transcriptional regulator
1332	 63.88	0	1377746..1378963	-	405	87199358	-	Saro_1337	-	ribonuclease D
1333	 65.88	0	1379139..1380920	+	593	87199359	aspS	Saro_1338	-	aspartyl-tRNA synthetase
1334	 57.38	-2	1381048..1381284	+	78	87199360	-	Saro_1339	-	acyl carrier protein
1335	 65.16	0	1381416..1382678	+	420	87199361	-	Saro_1340	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1336	 66.67	0	1382689..1383666	+	325	87199362	-	Saro_1341	-	aminodeoxychorismate lyase
1337	 67.90	0	1383792..1384439	+	215	87199363	-	Saro_1342	-	hypothetical protein
1338	 66.28	0	1384468..1385775	+	435	87199364	-	Saro_1343	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1339	 62.31	0	1386230..1388293	+	687	87199365	-	Saro_1344	-	hypothetical protein
1340	 60.94	-1	1388322..1389089	-	255	87199366	-	Saro_1345	-	abortive infection protein
1341	 67.80	0	1389434..1389961	+	175	87199367	-	Saro_1346	-	(2Fe-2S)-binding protein
1342	 67.27	0	1389958..1392267	+	769	87199368	-	Saro_1347	-	twin-arginine translocation pathway signal
1343	 68.58	+1	1392290..1394167	-	625	87199369	-	Saro_1348	-	ABC transporter related
1344	 64.19	0	1394446..1395456	-	336	87199370	-	Saro_1349	-	hypothetical protein
1345	 68.77	+1	1395459..1397264	-	601	87199371	-	Saro_1350	-	histidine kinase A-like
1346	 61.97	-1	1397513..1397980	+	155	87199372	-	Saro_1351	-	AsnC family transcriptional regulator
1347	 64.26	0	1398014..1398304	-	96	87199373	-	Saro_1352	-	chorismate mutase
1348	 65.58	0	1398395..1399408	+	337	87199374	-	Saro_1353	-	farnesyltranstransferase
1349	 63.13	0	1399440..1400456	+	338	87199375	-	Saro_1354	-	aldo/keto reductase
1350	 70.74	+1	1400714..1403167	+	817	87199376	-	Saro_1355	-	ATP-dependent helicase HrpB
1351	 64.52	0	1403216..1403494	+	92	87199377	-	Saro_1356	-	ETC complex I subunit region
1352	 65.68	0	1403928..1405649	+	573	87199378	-	Saro_1357	-	DNA polymerase III subunits gamma and tau
1353	 63.99	0	1405646..1405981	+	111	87199379	-	Saro_1358	-	hypothetical protein
1354	 64.67	0	1406057..1407109	+	350	87199380	-	Saro_1359	-	VacJ-like lipoprotein
1355	 65.02	0	1407116..1408150	-	344	87199381	-	Saro_1360	-	hypothetical protein
1356	 63.93	0	1408377..1410788	+	803	87199382	-	Saro_1361	-	Lon-A peptidase
1357	 63.74	0	1410990..1411262	+	90	87199383	-	Saro_1362	-	histone-like DNA-binding protein
1358	 65.27	0	1411377..1412237	-	286	87199384	-	Saro_1363	-	hypothetical protein
1359	 68.50	0	1412258..1413073	-	271	87199385	-	Saro_1364	-	RNA methyltransferase TrmH, group 3
1360	 65.64	0	1413395..1414267	+	290	87199386	-	Saro_1365	-	alpha/beta hydrolase
1361	 65.22	0	1414307..1415065	+	252	87199387	-	Saro_1366	-	phosphatidylserine decarboxylase
1362	 66.31	0	1415062..1415904	+	280	87199388	-	Saro_1367	-	CDP-alcohol phosphatidyltransferase
1363	 70.25	+1	1415852..1416130	-	92	87199389	-	Saro_1368	-	hypothetical protein
1364	 65.61	0	1416528..1417283	+	251	87199390	rpsB	Saro_1369	-	30S ribosomal protein S2
1365	 64.62	0	1417409..1418335	+	308	87199391	tsf	Saro_1370	-	elongation factor Ts
1366	 62.99	0	1418481..1419215	+	244	87199392	-	Saro_1371	-	uridylate kinase
1367	 63.08	0	1419217..1419774	+	185	87199393	-	Saro_1372	-	ribosome recycling factor
1368	 64.56	0	1419771..1420481	+	236	87199394	-	Saro_1373	-	undecaprenyl pyrophosphate synthetase
1369	 65.06	0	1420471..1421217	+	248	87199395	-	Saro_1374	-	phosphatidate cytidylyltransferase
1370	 67.53	0	1421222..1422379	+	385	87199396	-	Saro_1375	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1371	 63.01	0	1422393..1423514	+	373	87199397	-	Saro_1376	-	peptidase RseP
1372	 63.39	0	1423743..1426460	+	905	87199398	-	Saro_1377	-	surface antigen (D15)
1373	 65.94	0	1426460..1427143	+	227	87199399	-	Saro_1378	-	hypothetical protein
1374	 64.15	0	1427166..1427642	+	158	87199400	-	Saro_1379	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1375	 61.78	-1	1427743..1427967	+	74	87199401	rpmE	Saro_1380	-	50S ribosomal protein L31
1376	 66.67	0	1428104..1428544	+	146	87199402	-	Saro_1381	-	MarR family transcriptional regulator
1377	 62.89	0	1428555..1429190	-	211	87199403	-	Saro_1382	-	2OG-Fe(II) oxygenase
1378	 68.15	0	1429345..1429749	+	134	87199404	-	Saro_1383	-	general secretion pathway protein H
1379	 70.80	+1	1429739..1430173	+	144	87199405	-	Saro_1384	-	general secretion pathway protein I
1380	 69.51	+1	1430170..1430766	+	198	87199406	-	Saro_1385	-	general secretion pathway protein J
1381	 67.58	0	1430763..1431749	+	328	87199407	-	Saro_1386	-	general secretion pathway protein K
1382	 65.98	0	1432097..1432825	+	242	87199408	-	Saro_1387	-	heme exporter protein CcmC
1383	 65.96	0	1432833..1432973	+	46	87199409	-	Saro_1388	-	hypothetical protein
1384	 64.54	0	1432970..1433440	+	156	87199410	-	Saro_1389	-	cytochrome c-type biogenesis protein CcmE
1385	 66.11	0	1433437..1435404	+	655	87199411	-	Saro_1390	-	cytochrome c assembly protein
1386	 66.67	0	1435401..1435952	+	183	87199412	-	Saro_1391	-	periplasmic protein thiol
1387	 67.35	0	1435949..1436389	+	146	87199413	-	Saro_1392	-	cytochrome C biogenesis protein
1388	 68.81	+1	1436386..1437084	+	232	87199414	-	Saro_1393	-	tetratricopeptide TPR_4
1389	 63.79	0	1437252..1439198	+	648	87199415	-	Saro_1394	-	K+ potassium transporter
1390	 64.92	0	1439353..1440267	+	304	87199416	-	Saro_1395	-	signal transduction histidine kinase
1391	 62.99	0	1440264..1440617	+	117	87199417	-	Saro_1396	-	response regulator receiver domain-containing protein
1392	 64.38	0	1440684..1440989	-	101	87199418	-	Saro_1397	-	outer membrane protein
1393	 62.48	0	1441218..1441790	-	190	87199419	-	Saro_1398	-	hypothetical protein
1394	 61.82	-1	1441908..1442567	-	219	87199420	-	Saro_1399	-	intracellular septation protein A
1395	 67.10	0	1442564..1443490	-	308	87199421	-	Saro_1400	-	signal recognition particle-docking protein FtsY
1396	 65.58	0	1443487..1444683	-	398	87199422	-	Saro_1401	-	MiaB-like tRNA modifying enzyme
1397	 66.55	0	1444680..1445507	-	275	87199423	-	Saro_1402	-	diaminopimelate epimerase
1398	 64.38	0	1445564..1447267	-	567	87199424	-	Saro_1403	-	diguanylate cyclase/phosphodiesterase
1399	 66.06	0	1447540..1449015	+	491	87199425	-	Saro_1404	-	signal recognition particle subunit FFH/SRP54 (srp54)
1400	 67.12	0	1449064..1449501	+	145	87199426	rpsP	Saro_1405	-	30S ribosomal protein S16
1401	 65.87	0	1449504..1450004	+	166	87199427	-	Saro_1406	-	16S rRNA processing protein RimM
1402	 65.72	0	1450001..1450741	+	246	87199428	-	Saro_1407	-	tRNA (Guanine37-N1) methyltransferase
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.