IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1273	 67.39	0	1318409..1319236	+	275	87199299	-	Saro_1278	-	putative methyltransferase
1274	 66.67	0	1319280..1321925	+	881	87199300	alaS	Saro_1279	-	alanyl-tRNA synthetase
1275	 66.06	0	1321929..1322093	-	54	87199301	-	Saro_1280	-	hypothetical protein
1276	 64.65	0	1322145..1323929	-	594	87199302	-	Saro_1281	-	sodium/hydrogen exchanger
1277	 62.17	0	1324213..1325436	-	407	87199303	-	Saro_1282	-	isocitrate dehydrogenase
1278	 66.41	0	1325623..1326387	+	254	87199304	-	Saro_1283	-	short chain enoyl-CoA hydratase
1279	 69.96	+1	1326432..1327220	-	262	87199305	-	Saro_1284	-	3-deoxy-manno-octulosonate cytidylyltransferase
1280	 70.04	+1	1327217..1328431	-	404	87199306	-	Saro_1285	-	capsule polysaccharide biosynthesis
1281	 69.86	+1	1328422..1329735	-	437	87199307	-	Saro_1286	-	capsule polysaccharide biosynthesis
1282	 63.80	0	1330047..1330430	-	127	87199308	-	Saro_1287	-	response regulator receiver domain-containing protein
1283	 68.65	+1	1330636..1331544	+	302	87199309	-	Saro_1288	-	N-formylglutamate amidohydrolase
1284	 63.72	0	1331879..1332658	-	259	87199310	-	Saro_1289	-	SapC
1285	 70.19	+1	1332757..1334175	-	472	87199311	-	Saro_1290	-	FAD linked oxidase-like
1286	 66.84	0	1334341..1334913	+	190	87199312	-	Saro_1291	-	hypothetical protein
1287	 66.09	0	1335055..1336449	+	464	87199313	-	Saro_1292	-	DEAD/DEAH box helicase-like
1288	 65.88	0	1336587..1338884	-	765	87199314	-	Saro_1293	-	ATP-dependent DNA helicase Rep
1289	 69.37	+1	1339056..1339685	+	209	87199315	-	Saro_1294	-	hypothetical protein
1290	 68.95	+1	1339901..1341172	+	423	87199316	-	Saro_1295	-	general substrate transporter
1291	 71.82	+2	1341179..1341721	-	180	87199317	-	Saro_1296	-	hypothetical protein
1292	 69.50	+1	1341718..1342530	-	270	87199318	-	Saro_1297	-	pseudouridine synthase, Rsu
1293	 66.37	0	1342714..1344042	+	442	87199319	-	Saro_1298	-	major facilitator transporter
1294	 68.96	+1	1344074..1345381	-	435	87199320	-	Saro_1299	-	FolC bifunctional protein
1295	 65.49	0	1345413..1346264	-	283	87199321	-	Saro_1300	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
1296	 69.41	+1	1346261..1347061	-	266	87199322	trpA	Saro_1301	-	tryptophan synthase subunit alpha
1297	 67.82	0	1347061..1348275	-	404	87199323	-	Saro_1302	-	tryptophan synthase subunit beta
1298	 65.41	0	1348647..1349204	+	185	87199324	-	Saro_1303	-	hypothetical protein
1299	 71.74	+2	1349308..1349997	-	229	87199325	-	Saro_1304	-	phosphoribosylanthranilate isomerase
1300	 68.39	0	1350010..1350765	-	251	87199326	-	Saro_1305	-	hypothetical protein
1301	 67.46	0	1350835..1351338	-	167	87199327	-	Saro_1306	-	GCN5-related N-acetyltransferase
1302	 68.74	+1	1351343..1352017	-	224	87199328	-	Saro_1307	-	orotidine-5'-phosphate decarboxylase
1303	 66.67	0	1352014..1352343	-	109	87199329	-	Saro_1308	-	hypothetical protein
1304	 66.59	0	1352436..1353752	-	438	87199330	-	Saro_1309	-	adenylosuccinate lyase
1305	 69.88	+1	1353867..1355732	-	621	87199331	-	Saro_1310	-	acyltransferase 3
1306	 65.99	0	1356054..1356791	-	245	87199332	-	Saro_1311	-	DNA repair protein RadC
1307	 69.17	+1	1356877..1360107	+	1076	87199333	-	Saro_1312	-	hypothetical protein
1308	 61.84	-1	1360155..1360361	+	68	87199334	-	Saro_1313	-	hypothetical protein
1309	 68.63	+1	1360382..1360789	+	135	87199335	-	Saro_1314	-	hypothetical protein
1310	 62.62	0	1360997..1361317	+	106	87199336	-	Saro_1315	-	putative ATP synthase protein I
1311	 60.54	-1	1361358..1362140	+	260	87199337	-	Saro_1316	-	F0F1 ATP synthase subunit A
1312	 66.67	0	1362189..1362416	+	75	87199338	-	Saro_1317	-	H+-transporting two-sector ATPase, C subunit
1313	 67.88	0	1362491..1362985	+	164	87199339	-	Saro_1318	-	H+-transporting two-sector ATPase, B/B' subunit
1314	 66.67	0	1362978..1363532	+	184	87199340	-	Saro_1319	-	H+-transporting two-sector ATPase, B/B' subunit
1315	 67.64	0	1363722..1364750	-	342	87199341	-	Saro_1320	-	LacI family transcription regulator
1316	 68.89	+1	1364792..1365556	-	254	87199342	-	Saro_1321	-	hydroxyacylglutathione hydrolase
1317	 65.43	0	1365649..1367349	-	566	87199343	rpsA	Saro_1322	-	30S ribosomal protein S1
1318	 48.58	-2	1367634..1368020	-	128	87199344	-	Saro_1323	-	hypothetical protein
1319	 69.22	+1	1368133..1368759	-	208	87199345	-	Saro_1324	-	cytidylate kinase
1320	 62.75	0	1368756..1369010	-	84	87199346	-	Saro_1325	-	putative permease
1321	 70.14	+1	1369010..1370335	-	441	87199347	-	Saro_1326	-	3-phosphoshikimate 1-carboxyvinyltransferase
1322	 61.01	-1	1370546..1370863	+	105	87199348	-	Saro_1327	-	hypothetical protein
1323	 68.32	0	1371271..1371876	+	201	87199349	-	Saro_1328	-	hypothetical protein
1324	 64.54	0	1371876..1372580	+	234	87199350	-	Saro_1329	-	hypothetical protein
1325	 66.03	0	1372662..1373597	-	311	87199351	-	Saro_1330	-	2OG-Fe(II) oxygenase
1326	 63.51	0	1373662..1374105	+	147	87199352	-	Saro_1331	-	hypothetical protein
1327	 66.12	0	1374166..1374348	+	60	87199353	-	Saro_1332	-	CsbD-like
1328	 63.48	0	1374493..1374774	+	93	87199354	-	Saro_1333	-	hypothetical protein
1329	 62.59	0	1374764..1376086	-	440	87199355	-	Saro_1334	-	major facilitator transporter
1330	 62.96	0	1376224..1376817	+	197	87199356	-	Saro_1335	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1331	 68.23	0	1376843..1377739	-	298	87199357	-	Saro_1336	-	LysR family transcriptional regulator
1332	 63.88	0	1377746..1378963	-	405	87199358	-	Saro_1337	-	ribonuclease D
1333	 65.88	0	1379139..1380920	+	593	87199359	aspS	Saro_1338	-	aspartyl-tRNA synthetase
1334	 57.38	-2	1381048..1381284	+	78	87199360	-	Saro_1339	-	acyl carrier protein
1335	 65.16	0	1381416..1382678	+	420	87199361	-	Saro_1340	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1336	 66.67	0	1382689..1383666	+	325	87199362	-	Saro_1341	-	aminodeoxychorismate lyase
1337	 67.90	0	1383792..1384439	+	215	87199363	-	Saro_1342	-	hypothetical protein
1338	 66.28	0	1384468..1385775	+	435	87199364	-	Saro_1343	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1339	 62.31	0	1386230..1388293	+	687	87199365	-	Saro_1344	-	hypothetical protein
1340	 60.94	-1	1388322..1389089	-	255	87199366	-	Saro_1345	-	abortive infection protein
1341	 67.80	0	1389434..1389961	+	175	87199367	-	Saro_1346	-	(2Fe-2S)-binding protein
1342	 67.27	0	1389958..1392267	+	769	87199368	-	Saro_1347	-	twin-arginine translocation pathway signal
1343	 68.58	+1	1392290..1394167	-	625	87199369	-	Saro_1348	-	ABC transporter related
1344	 64.19	0	1394446..1395456	-	336	87199370	-	Saro_1349	-	hypothetical protein
1345	 68.77	+1	1395459..1397264	-	601	87199371	-	Saro_1350	-	histidine kinase A-like
1346	 61.97	-1	1397513..1397980	+	155	87199372	-	Saro_1351	-	AsnC family transcriptional regulator
1347	 64.26	0	1398014..1398304	-	96	87199373	-	Saro_1352	-	chorismate mutase
1348	 65.58	0	1398395..1399408	+	337	87199374	-	Saro_1353	-	farnesyltranstransferase
1349	 63.13	0	1399440..1400456	+	338	87199375	-	Saro_1354	-	aldo/keto reductase
1350	 70.74	+1	1400714..1403167	+	817	87199376	-	Saro_1355	-	ATP-dependent helicase HrpB
1351	 64.52	0	1403216..1403494	+	92	87199377	-	Saro_1356	-	ETC complex I subunit region
1352	 65.68	0	1403928..1405649	+	573	87199378	-	Saro_1357	-	DNA polymerase III subunits gamma and tau
1353	 63.99	0	1405646..1405981	+	111	87199379	-	Saro_1358	-	hypothetical protein
1354	 64.67	0	1406057..1407109	+	350	87199380	-	Saro_1359	-	VacJ-like lipoprotein
1355	 65.02	0	1407116..1408150	-	344	87199381	-	Saro_1360	-	hypothetical protein
1356	 63.93	0	1408377..1410788	+	803	87199382	-	Saro_1361	-	Lon-A peptidase
1357	 63.74	0	1410990..1411262	+	90	87199383	-	Saro_1362	-	histone-like DNA-binding protein
1358	 65.27	0	1411377..1412237	-	286	87199384	-	Saro_1363	-	hypothetical protein
1359	 68.50	0	1412258..1413073	-	271	87199385	-	Saro_1364	-	RNA methyltransferase TrmH, group 3
1360	 65.64	0	1413395..1414267	+	290	87199386	-	Saro_1365	-	alpha/beta hydrolase
1361	 65.22	0	1414307..1415065	+	252	87199387	-	Saro_1366	-	phosphatidylserine decarboxylase
1362	 66.31	0	1415062..1415904	+	280	87199388	-	Saro_1367	-	CDP-alcohol phosphatidyltransferase
1363	 70.25	+1	1415852..1416130	-	92	87199389	-	Saro_1368	-	hypothetical protein
1364	 65.61	0	1416528..1417283	+	251	87199390	rpsB	Saro_1369	-	30S ribosomal protein S2
1365	 64.62	0	1417409..1418335	+	308	87199391	tsf	Saro_1370	-	elongation factor Ts
1366	 62.99	0	1418481..1419215	+	244	87199392	-	Saro_1371	-	uridylate kinase
1367	 63.08	0	1419217..1419774	+	185	87199393	-	Saro_1372	-	ribosome recycling factor
1368	 64.56	0	1419771..1420481	+	236	87199394	-	Saro_1373	-	undecaprenyl pyrophosphate synthetase
1369	 65.06	0	1420471..1421217	+	248	87199395	-	Saro_1374	-	phosphatidate cytidylyltransferase
1370	 67.53	0	1421222..1422379	+	385	87199396	-	Saro_1375	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1371	 63.01	0	1422393..1423514	+	373	87199397	-	Saro_1376	-	peptidase RseP
1372	 63.39	0	1423743..1426460	+	905	87199398	-	Saro_1377	-	surface antigen (D15)
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.