version 1.0
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1226 67.30 0 1282400..1283035 - 211 87199252 - Saro_1230 - GTP cyclohydrolase 1227 62.05 -1 1283080..1283751 + 223 87199253 - Saro_1231 - LuxR family transcriptional regulator 1228 64.02 0 1283767..1284747 - 326 87199254 - Saro_1232 - signal transduction histidine kinase 1229 61.04 -1 1285156..1285884 + 242 87199255 - Saro_1233 - extradiol ring-cleavage dioxygenase LigAB, LigA subunit 1230 62.40 0 1285884..1286726 + 280 87199256 - Saro_1234 - protocatechuate 4,5-dioxygenase subunit beta 1231 64.93 0 1286812..1287213 - 133 87199257 - Saro_1235 - hypothetical protein 1232 63.96 0 1287299..1287925 - 208 87199258 - Saro_1236 - two component LuxR family transcriptional regulator 1233 67.03 0 1287922..1289565 - 547 87199259 - Saro_1237 - putative signal transduction histidine kinase 1234 60.91 -1 1289802..1290305 + 167 87199260 - Saro_1238 - LuxR family transcriptional regulator 1235 68.07 0 1290408..1290764 + 118 87199261 - Saro_1239 - hypothetical protein 1236 63.09 0 1290802..1291248 + 148 87199262 - Saro_1240 - hypothetical protein 1237 68.98 +1 1291310..1291828 + 172 87199263 - Saro_1241 - MarR family transcriptional regulator 1238 66.67 0 1292770..1293186 + 138 87199264 - Saro_1243 - hypothetical protein 1239 64.78 0 1293513..1293884 + 123 87199265 rpsL Saro_1244 - 30S ribosomal protein S12 1240 63.06 0 1293986..1294456 + 156 87199266 - Saro_1245 - 30S ribosomal protein S7 1241 62.28 0 1294541..1296613 + 690 87199267 - Saro_1246 - elongation factor G 1242 63.39 0 1296706..1297896 + 396 87199268 - Saro_1247 - elongation factor Tu 1243 61.54 -1 1298066..1298377 + 103 87199269 - Saro_1248 - 30S ribosomal protein S10 1244 64.02 0 1298719..1299474 + 251 87199270 rplC Saro_1249 - 50S ribosomal protein L3 1245 63.62 0 1299478..1300101 + 207 87199271 rplD Saro_1250 - 50S ribosomal protein L4 1246 60.07 -1 1300094..1300396 + 100 87199272 rplW Saro_1251 - 50S ribosomal protein L23 1247 64.40 0 1300406..1301242 + 278 87199273 rplB Saro_1252 - 50S ribosomal protein L2 1248 61.29 -1 1301249..1301527 + 92 87199274 - Saro_1253 - SSU ribosomal protein S19P 1249 63.76 0 1301527..1301904 + 125 87199275 rplV Saro_1254 - 50S ribosomal protein L22 1250 63.65 0 1301907..1302602 + 231 87199276 rpsC Saro_1255 - 30S ribosomal protein S3 1251 67.13 0 1302625..1303059 + 144 87199277 rplP Saro_1256 - 50S ribosomal protein L16 1252 61.84 -1 1303070..1303276 + 68 87199278 - Saro_1257 - 50S ribosomal protein L29 1253 61.48 -1 1303287..1303556 + 89 87199279 - Saro_1258 - SSU ribosomal protein S17P 1254 63.69 0 1303671..1304039 + 122 87199280 rplN Saro_1259 - 50S ribosomal protein L14 1255 64.47 0 1304039..1304356 + 105 87199281 rplX Saro_1260 - 50S ribosomal protein L24 1256 60.48 -1 1304349..1304930 + 193 87199282 rplE Saro_1261 - 50S ribosomal protein L5 1257 62.42 0 1304959..1305264 + 101 87199283 rpsN Saro_1262 - 30S ribosomal protein S14 1258 64.90 0 1305275..1305670 + 131 87199284 rpsH Saro_1263 - 30S ribosomal protein S8 1259 62.92 0 1305670..1306203 + 177 87199285 rplF Saro_1264 - 50S ribosomal protein L6 1260 68.09 0 1306203..1306553 + 116 87199286 rplR Saro_1265 - 50S ribosomal protein L18 1261 67.23 0 1306556..1307269 + 237 87199287 rpsE Saro_1266 - 30S ribosomal protein S5 1262 63.28 0 1307276..1307452 + 58 87199288 rpmD Saro_1267 - 50S ribosomal protein L30 1263 65.31 0 1307618..1308133 + 171 161760695 rplO Saro_1268 - 50S ribosomal protein L15 1264 61.77 -1 1308286..1309653 + 455 87199290 secY Saro_1269 - preprotein translocase subunit SecY 1265 67.28 0 1309682..1310332 + 216 87199291 - Saro_1270 - adenylate kinase 1266 65.58 0 1310380..1311117 + 245 87199292 - Saro_1271 - hypothetical protein 1267 62.46 0 1311265..1312620 + 451 87199293 - Saro_1272 - glutamate dehydrogenase 1268 66.67 0 1312675..1313022 - 115 87199294 - Saro_1273 - hypothetical protein 1269 61.85 -1 1313066..1313875 - 269 87199295 - Saro_1274 - response regulator receiver domain-containing protein 1270 63.68 0 1314279..1315349 + 356 87199296 recA Saro_1275 - recombinase A 1271 64.43 0 1315537..1316163 + 208 87199297 - Saro_1276 - glutathione S-transferase-like 1272 67.88 0 1316192..1318252 - 686 87199298 - Saro_1277 - elongation factor G 1273 67.39 0 1318409..1319236 + 275 87199299 - Saro_1278 - putative methyltransferase 1274 66.67 0 1319280..1321925 + 881 87199300 alaS Saro_1279 - alanyl-tRNA synthetase 1275 66.06 0 1321929..1322093 - 54 87199301 - Saro_1280 - hypothetical protein 1276 64.65 0 1322145..1323929 - 594 87199302 - Saro_1281 - sodium/hydrogen exchanger 1277 62.17 0 1324213..1325436 - 407 87199303 - Saro_1282 - isocitrate dehydrogenase 1278 66.41 0 1325623..1326387 + 254 87199304 - Saro_1283 - short chain enoyl-CoA hydratase 1279 69.96 +1 1326432..1327220 - 262 87199305 - Saro_1284 - 3-deoxy-manno-octulosonate cytidylyltransferase 1280 70.04 +1 1327217..1328431 - 404 87199306 - Saro_1285 - capsule polysaccharide biosynthesis 1281 69.86 +1 1328422..1329735 - 437 87199307 - Saro_1286 - capsule polysaccharide biosynthesis 1282 63.80 0 1330047..1330430 - 127 87199308 - Saro_1287 - response regulator receiver domain-containing protein 1283 68.65 +1 1330636..1331544 + 302 87199309 - Saro_1288 - N-formylglutamate amidohydrolase 1284 63.72 0 1331879..1332658 - 259 87199310 - Saro_1289 - SapC 1285 70.19 +1 1332757..1334175 - 472 87199311 - Saro_1290 - FAD linked oxidase-like 1286 66.84 0 1334341..1334913 + 190 87199312 - Saro_1291 - hypothetical protein 1287 66.09 0 1335055..1336449 + 464 87199313 - Saro_1292 - DEAD/DEAH box helicase-like 1288 65.88 0 1336587..1338884 - 765 87199314 - Saro_1293 - ATP-dependent DNA helicase Rep 1289 69.37 +1 1339056..1339685 + 209 87199315 - Saro_1294 - hypothetical protein 1290 68.95 +1 1339901..1341172 + 423 87199316 - Saro_1295 - general substrate transporter 1291 71.82 +2 1341179..1341721 - 180 87199317 - Saro_1296 - hypothetical protein 1292 69.50 +1 1341718..1342530 - 270 87199318 - Saro_1297 - pseudouridine synthase, Rsu 1293 66.37 0 1342714..1344042 + 442 87199319 - Saro_1298 - major facilitator transporter 1294 68.96 +1 1344074..1345381 - 435 87199320 - Saro_1299 - FolC bifunctional protein 1295 65.49 0 1345413..1346264 - 283 87199321 - Saro_1300 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1296 69.41 +1 1346261..1347061 - 266 87199322 trpA Saro_1301 - tryptophan synthase subunit alpha 1297 67.82 0 1347061..1348275 - 404 87199323 - Saro_1302 - tryptophan synthase subunit beta 1298 65.41 0 1348647..1349204 + 185 87199324 - Saro_1303 - hypothetical protein 1299 71.74 +2 1349308..1349997 - 229 87199325 - Saro_1304 - phosphoribosylanthranilate isomerase 1300 68.39 0 1350010..1350765 - 251 87199326 - Saro_1305 - hypothetical protein 1301 67.46 0 1350835..1351338 - 167 87199327 - Saro_1306 - GCN5-related N-acetyltransferase 1302 68.74 +1 1351343..1352017 - 224 87199328 - Saro_1307 - orotidine-5'-phosphate decarboxylase 1303 66.67 0 1352014..1352343 - 109 87199329 - Saro_1308 - hypothetical protein 1304 66.59 0 1352436..1353752 - 438 87199330 - Saro_1309 - adenylosuccinate lyase 1305 69.88 +1 1353867..1355732 - 621 87199331 - Saro_1310 - acyltransferase 3 1306 65.99 0 1356054..1356791 - 245 87199332 - Saro_1311 - DNA repair protein RadC 1307 69.17 +1 1356877..1360107 + 1076 87199333 - Saro_1312 - hypothetical protein 1308 61.84 -1 1360155..1360361 + 68 87199334 - Saro_1313 - hypothetical protein 1309 68.63 +1 1360382..1360789 + 135 87199335 - Saro_1314 - hypothetical protein 1310 62.62 0 1360997..1361317 + 106 87199336 - Saro_1315 - putative ATP synthase protein I 1311 60.54 -1 1361358..1362140 + 260 87199337 - Saro_1316 - F0F1 ATP synthase subunit A 1312 66.67 0 1362189..1362416 + 75 87199338 - Saro_1317 - H+-transporting two-sector ATPase, C subunit 1313 67.88 0 1362491..1362985 + 164 87199339 - Saro_1318 - H+-transporting two-sector ATPase, B/B' subunit 1314 66.67 0 1362978..1363532 + 184 87199340 - Saro_1319 - H+-transporting two-sector ATPase, B/B' subunit 1315 67.64 0 1363722..1364750 - 342 87199341 - Saro_1320 - LacI family transcription regulator 1316 68.89 +1 1364792..1365556 - 254 87199342 - Saro_1321 - hydroxyacylglutathione hydrolase 1317 65.43 0 1365649..1367349 - 566 87199343 rpsA Saro_1322 - 30S ribosomal protein S1 1318 48.58 -2 1367634..1368020 - 128 87199344 - Saro_1323 - hypothetical protein 1319 69.22 +1 1368133..1368759 - 208 87199345 - Saro_1324 - cytidylate kinase 1320 62.75 0 1368756..1369010 - 84 87199346 - Saro_1325 - putative permease 1321 70.14 +1 1369010..1370335 - 441 87199347 - Saro_1326 - 3-phosphoshikimate 1-carboxyvinyltransferase 1322 61.01 -1 1370546..1370863 + 105 87199348 - Saro_1327 - hypothetical protein 1323 68.32 0 1371271..1371876 + 201 87199349 - Saro_1328 - hypothetical protein 1324 64.54 0 1371876..1372580 + 234 87199350 - Saro_1329 - hypothetical protein 1325 66.03 0 1372662..1373597 - 311 87199351 - Saro_1330 - 2OG-Fe(II) oxygenase 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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