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Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584 3324 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1192 66.83 0 1243919..1245124 + 401 87199218 - Saro_1196 - Rieske (2Fe-2S) protein 1193 64.59 0 1245211..1246557 - 448 87199219 - Saro_1197 - aldehyde dehydrogenase 1194 68.30 0 1246715..1247386 - 223 87199220 - Saro_1198 - phosphoglycolate phosphatase 1195 67.98 0 1247448..1248821 + 457 87199221 - Saro_1199 - UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase 1196 64.26 0 1248898..1249146 + 82 87199222 - Saro_1200 - CopG-like DNA-binding protein 1197 61.20 -1 1249150..1249515 + 121 87199223 - Saro_1201 - PilT protein-like 1198 68.15 0 1249534..1251357 + 607 87199224 - Saro_1202 - D-fructose-6-phosphate amidotransferase 1199 67.76 0 1251369..1251824 + 151 87199225 - Saro_1203 - tRNA/rRNA methyltransferase 1200 69.84 +1 1252074..1252862 - 262 87199226 - Saro_1204 - hypothetical protein 1201 65.04 0 1252859..1253782 - 307 87199227 - Saro_1205 - beta-lactamase-like 1202 60.63 -1 1253875..1254222 + 115 87199228 - Saro_1206 - ArsR family transcriptional regulator 1203 67.13 0 1254345..1254989 + 214 87199229 - Saro_1207 - twin-arginine translocation pathway signal 1204 65.77 0 1255008..1256687 + 559 87199230 - Saro_1208 - glucose-methanol-choline oxidoreductase 1205 69.06 +1 1256692..1258152 + 486 87199231 - Saro_1209 - major facilitator transporter 1206 63.95 0 1258216..1258803 + 195 87199232 - Saro_1210 - metal-dependent phosphohydrolase 1207 65.40 0 1258874..1260457 + 527 87199233 - Saro_1211 - acyl-CoA synthetase 1208 66.16 0 1260614..1261603 - 329 87199234 - Saro_1212 - hypothetical protein 1209 67.77 0 1261600..1264326 - 908 87199235 - Saro_1213 - hypothetical protein 1210 68.02 0 1264328..1265212 - 294 87199236 - Saro_1214 - hypothetical protein 1211 67.53 0 1265224..1265685 - 153 87199237 - Saro_1215 - hypothetical protein 1212 67.05 0 1265710..1266237 - 175 87199238 - Saro_1216 - hypothetical protein 1213 64.86 0 1266836..1267111 - 91 87199239 - Saro_1217 - histone-like DNA-binding protein 1214 67.74 0 1267442..1268650 + 402 87199240 - Saro_1218 - secretion protein HlyD 1215 64.18 0 1268657..1271791 + 1044 87199241 - Saro_1219 - hydrophobe/amphiphile efflux-1 HAE1 1216 67.95 0 1271788..1273191 + 467 87199242 - Saro_1220 - RND efflux system, outer membrane lipoprotein, NodT 1217 64.96 0 1273185..1274354 - 389 87199243 - Saro_1221 - acyl-CoA dehydrogenase-like 1218 67.57 0 1274354..1275568 - 404 87199244 - Saro_1222 - acetyl-CoA acetyltransferase 1219 66.02 0 1275620..1276849 - 409 87199245 - Saro_1223 - L-carnitine dehydratase/bile acid-inducible protein F 1220 63.88 0 1276877..1278061 - 394 87199246 - Saro_1224 - acyl-CoA dehydrogenase-like 1221 65.14 0 1278073..1278990 - 305 87199247 - Saro_1225 - short-chain dehydrogenase/reductase SDR 1222 69.07 +1 1279093..1279842 + 249 87199248 - Saro_1226 - IclR family transcriptional regulator 1223 66.12 0 1279961..1280869 + 302 87199249 - Saro_1227 - LysR family transcriptional regulator 1224 63.85 0 1280878..1281339 - 153 87199250 - Saro_1228 - thioesterase superfamily protein 1225 68.72 +1 1281400..1282374 - 324 87199251 - Saro_1229 - putative deoxyribodipyrimidine photolyase 1226 67.30 0 1282400..1283035 - 211 87199252 - Saro_1230 - GTP cyclohydrolase 1227 62.05 -1 1283080..1283751 + 223 87199253 - Saro_1231 - LuxR family transcriptional regulator 1228 64.02 0 1283767..1284747 - 326 87199254 - Saro_1232 - signal transduction histidine kinase 1229 61.04 -1 1285156..1285884 + 242 87199255 - Saro_1233 - extradiol ring-cleavage dioxygenase LigAB, LigA subunit 1230 62.40 0 1285884..1286726 + 280 87199256 - Saro_1234 - protocatechuate 4,5-dioxygenase subunit beta 1231 64.93 0 1286812..1287213 - 133 87199257 - Saro_1235 - hypothetical protein 1232 63.96 0 1287299..1287925 - 208 87199258 - Saro_1236 - two component LuxR family transcriptional regulator 1233 67.03 0 1287922..1289565 - 547 87199259 - Saro_1237 - putative signal transduction histidine kinase 1234 60.91 -1 1289802..1290305 + 167 87199260 - Saro_1238 - LuxR family transcriptional regulator 1235 68.07 0 1290408..1290764 + 118 87199261 - Saro_1239 - hypothetical protein 1236 63.09 0 1290802..1291248 + 148 87199262 - Saro_1240 - hypothetical protein 1237 68.98 +1 1291310..1291828 + 172 87199263 - Saro_1241 - MarR family transcriptional regulator 1238 66.67 0 1292770..1293186 + 138 87199264 - Saro_1243 - hypothetical protein 1239 64.78 0 1293513..1293884 + 123 87199265 rpsL Saro_1244 - 30S ribosomal protein S12 1240 63.06 0 1293986..1294456 + 156 87199266 - Saro_1245 - 30S ribosomal protein S7 1241 62.28 0 1294541..1296613 + 690 87199267 - Saro_1246 - elongation factor G 1242 63.39 0 1296706..1297896 + 396 87199268 - Saro_1247 - elongation factor Tu 1243 61.54 -1 1298066..1298377 + 103 87199269 - Saro_1248 - 30S ribosomal protein S10 1244 64.02 0 1298719..1299474 + 251 87199270 rplC Saro_1249 - 50S ribosomal protein L3 1245 63.62 0 1299478..1300101 + 207 87199271 rplD Saro_1250 - 50S ribosomal protein L4 1246 60.07 -1 1300094..1300396 + 100 87199272 rplW Saro_1251 - 50S ribosomal protein L23 1247 64.40 0 1300406..1301242 + 278 87199273 rplB Saro_1252 - 50S ribosomal protein L2 1248 61.29 -1 1301249..1301527 + 92 87199274 - Saro_1253 - SSU ribosomal protein S19P 1249 63.76 0 1301527..1301904 + 125 87199275 rplV Saro_1254 - 50S ribosomal protein L22 1250 63.65 0 1301907..1302602 + 231 87199276 rpsC Saro_1255 - 30S ribosomal protein S3 1251 67.13 0 1302625..1303059 + 144 87199277 rplP Saro_1256 - 50S ribosomal protein L16 1252 61.84 -1 1303070..1303276 + 68 87199278 - Saro_1257 - 50S ribosomal protein L29 1253 61.48 -1 1303287..1303556 + 89 87199279 - Saro_1258 - SSU ribosomal protein S17P 1254 63.69 0 1303671..1304039 + 122 87199280 rplN Saro_1259 - 50S ribosomal protein L14 1255 64.47 0 1304039..1304356 + 105 87199281 rplX Saro_1260 - 50S ribosomal protein L24 1256 60.48 -1 1304349..1304930 + 193 87199282 rplE Saro_1261 - 50S ribosomal protein L5 1257 62.42 0 1304959..1305264 + 101 87199283 rpsN Saro_1262 - 30S ribosomal protein S14 1258 64.90 0 1305275..1305670 + 131 87199284 rpsH Saro_1263 - 30S ribosomal protein S8 1259 62.92 0 1305670..1306203 + 177 87199285 rplF Saro_1264 - 50S ribosomal protein L6 1260 68.09 0 1306203..1306553 + 116 87199286 rplR Saro_1265 - 50S ribosomal protein L18 1261 67.23 0 1306556..1307269 + 237 87199287 rpsE Saro_1266 - 30S ribosomal protein S5 1262 63.28 0 1307276..1307452 + 58 87199288 rpmD Saro_1267 - 50S ribosomal protein L30 1263 65.31 0 1307618..1308133 + 171 161760695 rplO Saro_1268 - 50S ribosomal protein L15 1264 61.77 -1 1308286..1309653 + 455 87199290 secY Saro_1269 - preprotein translocase subunit SecY 1265 67.28 0 1309682..1310332 + 216 87199291 - Saro_1270 - adenylate kinase 1266 65.58 0 1310380..1311117 + 245 87199292 - Saro_1271 - hypothetical protein 1267 62.46 0 1311265..1312620 + 451 87199293 - Saro_1272 - glutamate dehydrogenase 1268 66.67 0 1312675..1313022 - 115 87199294 - Saro_1273 - hypothetical protein 1269 61.85 -1 1313066..1313875 - 269 87199295 - Saro_1274 - response regulator receiver domain-containing protein 1270 63.68 0 1314279..1315349 + 356 87199296 recA Saro_1275 - recombinase A 1271 64.43 0 1315537..1316163 + 208 87199297 - Saro_1276 - glutathione S-transferase-like 1272 67.88 0 1316192..1318252 - 686 87199298 - Saro_1277 - elongation factor G 1273 67.39 0 1318409..1319236 + 275 87199299 - Saro_1278 - putative methyltransferase 1274 66.67 0 1319280..1321925 + 881 87199300 alaS Saro_1279 - alanyl-tRNA synthetase 1275 66.06 0 1321929..1322093 - 54 87199301 - Saro_1280 - hypothetical protein 1276 64.65 0 1322145..1323929 - 594 87199302 - Saro_1281 - sodium/hydrogen exchanger 1277 62.17 0 1324213..1325436 - 407 87199303 - Saro_1282 - isocitrate dehydrogenase 1278 66.41 0 1325623..1326387 + 254 87199304 - Saro_1283 - short chain enoyl-CoA hydratase 1279 69.96 +1 1326432..1327220 - 262 87199305 - Saro_1284 - 3-deoxy-manno-octulosonate cytidylyltransferase 1280 70.04 +1 1327217..1328431 - 404 87199306 - Saro_1285 - capsule polysaccharide biosynthesis 1281 69.86 +1 1328422..1329735 - 437 87199307 - Saro_1286 - capsule polysaccharide biosynthesis 1282 63.80 0 1330047..1330430 - 127 87199308 - Saro_1287 - response regulator receiver domain-containing protein 1283 68.65 +1 1330636..1331544 + 302 87199309 - Saro_1288 - N-formylglutamate amidohydrolase 1284 63.72 0 1331879..1332658 - 259 87199310 - Saro_1289 - SapC 1285 70.19 +1 1332757..1334175 - 472 87199311 - Saro_1290 - FAD linked oxidase-like 1286 66.84 0 1334341..1334913 + 190 87199312 - Saro_1291 - hypothetical protein 1287 66.09 0 1335055..1336449 + 464 87199313 - Saro_1292 - DEAD/DEAH box helicase-like 1288 65.88 0 1336587..1338884 - 765 87199314 - Saro_1293 - ATP-dependent DNA helicase Rep 1289 69.37 +1 1339056..1339685 + 209 87199315 - Saro_1294 - hypothetical protein 1290 68.95 +1 1339901..1341172 + 423 87199316 - Saro_1295 - general substrate transporter 1291 71.82 +2 1341179..1341721 - 180 87199317 - Saro_1296 - hypothetical protein 65.30 MEAN 3.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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