IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1154	 65.07	0	1205116..1205490	+	124	87199180	-	Saro_1158	-	phage shock protein C, PspC
1155	 64.18	0	1205522..1205803	+	93	87199181	-	Saro_1159	-	hypothetical protein
1156	 68.59	+1	1205800..1206111	+	103	87199182	-	Saro_1160	-	hypothetical protein
1157	 63.00	0	1206108..1206380	+	90	87199183	-	Saro_1161	-	hypothetical protein
1158	 65.88	0	1206395..1206649	+	84	87199184	-	Saro_1162	-	hypothetical protein
1159	 69.01	+1	1206672..1206884	+	70	87199185	-	Saro_1163	-	hypothetical protein
1160	 67.15	0	1206957..1207370	+	137	87199186	-	Saro_1164	-	Fe-S metabolism associated SufE
1161	 69.52	+1	1207388..1207738	+	116	87199187	-	Saro_1165	-	hypothetical protein
1162	 68.90	+1	1207735..1208808	+	357	87199188	-	Saro_1166	-	acyltransferase 3
1163	 67.36	0	1208875..1209450	+	191	87199189	-	Saro_1167	-	hypothetical protein
1164	 65.16	0	1209469..1209999	-	176	87199190	-	Saro_1168	-	carotene hydroxylase
1165	 69.03	+1	1210124..1210504	+	126	87199191	-	Saro_1169	-	hypothetical protein
1166	 68.34	0	1210614..1212050	+	478	87199192	-	Saro_1170	-	isopropylmalate isomerase large subunit
1167	 69.11	+1	1212058..1212588	+	176	87199193	-	Saro_1171	-	hypothetical protein
1168	 67.26	0	1212585..1213091	+	168	87199194	-	Saro_1172	-	uracil-DNA glycosylase superfamily protein
1169	 64.86	0	1213375..1213983	+	202	87199195	-	Saro_1173	-	3-isopropylmalate dehydratase, small subunit
1170	 68.56	+1	1214075..1215076	+	333	87199196	-	Saro_1174	-	alcohol dehydrogenase
1171	 70.27	+1	1215126..1215764	-	212	87199197	-	Saro_1175	-	hypothetical protein
1172	 70.77	+1	1215757..1216803	-	348	87199198	-	Saro_1176	-	2-nitropropane dioxygenase, NPD
1173	 61.11	-1	1216809..1217006	-	65	87199199	-	Saro_1177	-	hypothetical protein
1174	 64.60	0	1217118..1218518	-	466	87199200	-	Saro_1178	-	dihydrolipoamide dehydrogenase
1175	 66.99	0	1218600..1219826	-	408	87199201	-	Saro_1179	-	2-oxoglutarate dehydrogenase E2 component
1176	 66.49	0	1219865..1222717	-	950	87199202	kgd	Saro_1180	-	alpha-ketoglutarate decarboxylase
1177	 64.53	0	1222937..1223827	-	296	87199203	-	Saro_1181	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
1178	 65.42	0	1223941..1224903	-	320	87199204	-	Saro_1182	-	malate dehydrogenase (NAD)
1179	 68.59	+1	1225225..1225536	-	103	87199205	-	Saro_1183	-	hypothetical protein
1180	 65.07	0	1225715..1226656	-	313	87199206	-	Saro_1184	-	endo alpha-1,4 polygalactosaminidase, putative
1181	 72.20	+2	1226780..1228009	-	409	87199207	-	Saro_1185	-	cell wall hydrolase, SleB
1182	 69.03	+1	1228490..1230394	+	634	87199208	-	Saro_1186	-	TonB-dependent receptor
1183	 71.07	+1	1230445..1231398	+	317	87199209	-	Saro_1187	-	periplasmic binding protein
1184	 70.82	+1	1231395..1232357	+	320	87199210	-	Saro_1188	-	transport system permease protein
1185	 71.58	+1	1232357..1233088	+	243	87199211	-	Saro_1189	-	ABC transporter related
1186	 68.73	+1	1233486..1234793	+	435	87199212	-	Saro_1190	-	hypothetical protein
1187	 66.67	0	1234807..1235709	+	300	87199213	-	Saro_1191	-	hypothetical protein
1188	 66.39	0	1235856..1238768	+	970	87199214	uvrA	Saro_1192	-	excinuclease ABC subunit A
1189	 69.82	+1	1238854..1239360	-	168	87199215	-	Saro_1193	-	hypothetical protein
1190	 70.93	+1	1239972..1241567	+	531	87199216	-	Saro_1194	-	hypothetical protein
1191	 65.93	0	1242494..1243708	-	404	87199217	-	Saro_1195	-	argininosuccinate synthase
1192	 66.83	0	1243919..1245124	+	401	87199218	-	Saro_1196	-	Rieske (2Fe-2S) protein
1193	 64.59	0	1245211..1246557	-	448	87199219	-	Saro_1197	-	aldehyde dehydrogenase
1194	 68.30	0	1246715..1247386	-	223	87199220	-	Saro_1198	-	phosphoglycolate phosphatase
1195	 67.98	0	1247448..1248821	+	457	87199221	-	Saro_1199	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
1196	 64.26	0	1248898..1249146	+	82	87199222	-	Saro_1200	-	CopG-like DNA-binding protein
1197	 61.20	-1	1249150..1249515	+	121	87199223	-	Saro_1201	-	PilT protein-like
1198	 68.15	0	1249534..1251357	+	607	87199224	-	Saro_1202	-	D-fructose-6-phosphate amidotransferase
1199	 67.76	0	1251369..1251824	+	151	87199225	-	Saro_1203	-	tRNA/rRNA methyltransferase
1200	 69.84	+1	1252074..1252862	-	262	87199226	-	Saro_1204	-	hypothetical protein
1201	 65.04	0	1252859..1253782	-	307	87199227	-	Saro_1205	-	beta-lactamase-like
1202	 60.63	-1	1253875..1254222	+	115	87199228	-	Saro_1206	-	ArsR family transcriptional regulator
1203	 67.13	0	1254345..1254989	+	214	87199229	-	Saro_1207	-	twin-arginine translocation pathway signal
1204	 65.77	0	1255008..1256687	+	559	87199230	-	Saro_1208	-	glucose-methanol-choline oxidoreductase
1205	 69.06	+1	1256692..1258152	+	486	87199231	-	Saro_1209	-	major facilitator transporter
1206	 63.95	0	1258216..1258803	+	195	87199232	-	Saro_1210	-	metal-dependent phosphohydrolase
1207	 65.40	0	1258874..1260457	+	527	87199233	-	Saro_1211	-	acyl-CoA synthetase
1208	 66.16	0	1260614..1261603	-	329	87199234	-	Saro_1212	-	hypothetical protein
1209	 67.77	0	1261600..1264326	-	908	87199235	-	Saro_1213	-	hypothetical protein
1210	 68.02	0	1264328..1265212	-	294	87199236	-	Saro_1214	-	hypothetical protein
1211	 67.53	0	1265224..1265685	-	153	87199237	-	Saro_1215	-	hypothetical protein
1212	 67.05	0	1265710..1266237	-	175	87199238	-	Saro_1216	-	hypothetical protein
1213	 64.86	0	1266836..1267111	-	91	87199239	-	Saro_1217	-	histone-like DNA-binding protein
1214	 67.74	0	1267442..1268650	+	402	87199240	-	Saro_1218	-	secretion protein HlyD
1215	 64.18	0	1268657..1271791	+	1044	87199241	-	Saro_1219	-	hydrophobe/amphiphile efflux-1 HAE1
1216	 67.95	0	1271788..1273191	+	467	87199242	-	Saro_1220	-	RND efflux system, outer membrane lipoprotein, NodT
1217	 64.96	0	1273185..1274354	-	389	87199243	-	Saro_1221	-	acyl-CoA dehydrogenase-like
1218	 67.57	0	1274354..1275568	-	404	87199244	-	Saro_1222	-	acetyl-CoA acetyltransferase
1219	 66.02	0	1275620..1276849	-	409	87199245	-	Saro_1223	-	L-carnitine dehydratase/bile acid-inducible protein F
1220	 63.88	0	1276877..1278061	-	394	87199246	-	Saro_1224	-	acyl-CoA dehydrogenase-like
1221	 65.14	0	1278073..1278990	-	305	87199247	-	Saro_1225	-	short-chain dehydrogenase/reductase SDR
1222	 69.07	+1	1279093..1279842	+	249	87199248	-	Saro_1226	-	IclR family transcriptional regulator
1223	 66.12	0	1279961..1280869	+	302	87199249	-	Saro_1227	-	LysR family transcriptional regulator
1224	 63.85	0	1280878..1281339	-	153	87199250	-	Saro_1228	-	thioesterase superfamily protein
1225	 68.72	+1	1281400..1282374	-	324	87199251	-	Saro_1229	-	putative deoxyribodipyrimidine photolyase
1226	 67.30	0	1282400..1283035	-	211	87199252	-	Saro_1230	-	GTP cyclohydrolase
1227	 62.05	-1	1283080..1283751	+	223	87199253	-	Saro_1231	-	LuxR family transcriptional regulator
1228	 64.02	0	1283767..1284747	-	326	87199254	-	Saro_1232	-	signal transduction histidine kinase
1229	 61.04	-1	1285156..1285884	+	242	87199255	-	Saro_1233	-	extradiol ring-cleavage dioxygenase LigAB, LigA subunit
1230	 62.40	0	1285884..1286726	+	280	87199256	-	Saro_1234	-	protocatechuate 4,5-dioxygenase subunit beta
1231	 64.93	0	1286812..1287213	-	133	87199257	-	Saro_1235	-	hypothetical protein
1232	 63.96	0	1287299..1287925	-	208	87199258	-	Saro_1236	-	two component LuxR family transcriptional regulator
1233	 67.03	0	1287922..1289565	-	547	87199259	-	Saro_1237	-	putative signal transduction histidine kinase
1234	 60.91	-1	1289802..1290305	+	167	87199260	-	Saro_1238	-	LuxR family transcriptional regulator
1235	 68.07	0	1290408..1290764	+	118	87199261	-	Saro_1239	-	hypothetical protein
1236	 63.09	0	1290802..1291248	+	148	87199262	-	Saro_1240	-	hypothetical protein
1237	 68.98	+1	1291310..1291828	+	172	87199263	-	Saro_1241	-	MarR family transcriptional regulator
1238	 66.67	0	1292770..1293186	+	138	87199264	-	Saro_1243	-	hypothetical protein
1239	 64.78	0	1293513..1293884	+	123	87199265	rpsL	Saro_1244	-	30S ribosomal protein S12
1240	 63.06	0	1293986..1294456	+	156	87199266	-	Saro_1245	-	30S ribosomal protein S7
1241	 62.28	0	1294541..1296613	+	690	87199267	-	Saro_1246	-	elongation factor G
1242	 63.39	0	1296706..1297896	+	396	87199268	-	Saro_1247	-	elongation factor Tu
1243	 61.54	-1	1298066..1298377	+	103	87199269	-	Saro_1248	-	30S ribosomal protein S10
1244	 64.02	0	1298719..1299474	+	251	87199270	rplC	Saro_1249	-	50S ribosomal protein L3
1245	 63.62	0	1299478..1300101	+	207	87199271	rplD	Saro_1250	-	50S ribosomal protein L4
1246	 60.07	-1	1300094..1300396	+	100	87199272	rplW	Saro_1251	-	50S ribosomal protein L23
1247	 64.40	0	1300406..1301242	+	278	87199273	rplB	Saro_1252	-	50S ribosomal protein L2
1248	 61.29	-1	1301249..1301527	+	92	87199274	-	Saro_1253	-	SSU ribosomal protein S19P
1249	 63.76	0	1301527..1301904	+	125	87199275	rplV	Saro_1254	-	50S ribosomal protein L22
1250	 63.65	0	1301907..1302602	+	231	87199276	rpsC	Saro_1255	-	30S ribosomal protein S3
1251	 67.13	0	1302625..1303059	+	144	87199277	rplP	Saro_1256	-	50S ribosomal protein L16
1252	 61.84	-1	1303070..1303276	+	68	87199278	-	Saro_1257	-	50S ribosomal protein L29
1253	 61.48	-1	1303287..1303556	+	89	87199279	-	Saro_1258	-	SSU ribosomal protein S17P
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.