IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
72	 67.02	0	73153..73716	-	187	87198098	-	Saro_0072	-	transferase
73	 66.97	0	73731..74723	-	330	87198099	-	Saro_0073	-	delta-aminolevulinic acid dehydratase
74	 71.47	+1	74760..76301	-	513	87198100	-	Saro_0074	-	peptidase M23B
75	 64.92	0	76481..77512	+	343	87198101	-	Saro_0075	-	hypothetical protein
76	 65.43	0	77647..79581	-	644	87198102	-	Saro_0076	-	membrane protease FtsH catalytic subunit
77	 69.32	+1	79691..80671	-	326	87198103	-	Saro_0077	-	tRNA(Ile)-lysidine synthetase-like
78	 68.90	+1	80685..81668	-	327	87198104	-	Saro_0078	-	hypothetical protein
79	 69.76	+1	81777..82778	-	333	87198105	-	Saro_0079	-	hypothetical protein
80	 67.28	0	82906..85185	-	759	87198106	-	Saro_0080	-	phosphoenolpyruvate-protein phosphotransferase PtsP
81	 58.49	-2	85389..85547	-	52	87198107	-	Saro_0081	-	hypothetical protein
82	 58.59	-2	85777..85974	+	65	87198108	-	Saro_0082	-	hypothetical protein
83	 69.26	+1	86066..86605	+	179	87198109	-	Saro_0083	-	hypothetical protein
84	 68.91	+1	86610..88079	-	489	87198110	-	Saro_0084	-	glycerol kinase
85	 69.46	+1	88076..89545	-	489	87198111	-	Saro_0085	-	glycerol-3-phosphate dehydrogenase
86	 68.16	0	89584..90519	+	311	87198112	-	Saro_0086	-	beta-lactamase-like
87	 64.86	0	90501..91166	+	221	87198113	-	Saro_0087	-	hypothetical protein
88	 64.75	0	91248..91976	+	242	87198114	-	Saro_0088	-	hypothetical protein
89	 64.06	0	92038..93036	+	332	87198115	-	Saro_0089	-	quinolinate synthetase
90	 67.90	0	93172..94065	-	297	87198116	-	Saro_0090	-	hypothetical protein
91	 66.21	0	94149..95252	+	367	87198117	-	Saro_0091	-	NADH:flavin oxidoreductase/NADH oxidase
92	 67.12	0	95267..96148	+	293	87198118	-	Saro_0092	-	HpcH/HpaI aldolase
93	 70.23	+1	96131..96439	-	102	87198119	-	Saro_0093	-	hypothetical protein
94	 66.82	0	96436..97104	-	222	87198120	-	Saro_0094	-	lipoate-protein ligase B
95	 64.72	0	97182..98003	+	273	87198121	-	Saro_0095	-	hypothetical protein
96	 63.96	0	98012..98638	-	208	87198122	-	Saro_0096	-	generic methyltransferase
97	 67.95	0	98769..100091	+	440	87198123	-	Saro_0097	-	major facilitator transporter
98	 67.98	0	100138..101661	+	507	87198124	-	Saro_0098	-	O-antigen and teichoic acid-like export protein
99	 66.35	0	101654..102610	-	318	87198125	-	Saro_0099	-	CDP-alcohol phosphatidyltransferase
100	 67.40	0	102849..103934	+	361	87198126	-	Saro_0100	-	CDP-alcohol phosphatidyltransferase
101	 63.76	0	104030..105130	+	366	87198127	-	Saro_0101	-	myo-inositol-1-phosphate synthase
102	 66.53	0	105225..105974	+	249	87198128	-	Saro_0102	-	nucleotidyl transferase
103	 64.24	0	106017..106511	-	164	87198129	-	Saro_0103	-	hypothetical protein
104	 64.09	0	106888..107547	+	219	87198130	-	Saro_0104	-	ribulose-5-phosphate 3-epimerase
105	 67.73	0	107549..109435	+	628	87198131	-	Saro_0105	-	heparinase II/III-like
106	 65.79	0	109446..111035	+	529	87198132	purH	Saro_0106	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
107	 67.01	0	111131..112870	+	579	87198133	-	Saro_0107	-	CBS
108	 62.38	0	112945..113574	-	209	87198134	-	Saro_0108	-	cell wall hydrolase, SleB
109	 54.09	-2	113790..114131	-	113	87198135	-	Saro_0109	-	hypothetical protein
110	 66.25	0	114133..114615	-	160	87198136	-	Saro_0110	-	phenylacetic acid degradation-related protein
111	 65.37	0	114602..115063	-	153	87198137	-	Saro_0111	-	PTS IIA-like nitrogen-regulatory protein PtsN
112	 61.86	-1	115237..115818	-	193	87198138	-	Saro_0112	-	SSU ribosomal protein S30P / sigma 54 modulation protein
113	 64.07	0	115877..116569	-	230	87198139	-	Saro_0113	-	DNA polymerase III, epsilon subunit
114	 65.18	0	116615..117220	-	201	87198140	-	Saro_0114	-	dephospho-CoA kinase
115	 64.15	0	117217..118089	-	290	87198141	-	Saro_0115	-	shikimate dehydrogenase
116	 62.07	-1	118086..118673	-	195	87198142	-	Saro_0116	-	Maf-like protein
117	 60.85	-1	118670..119512	-	280	87198143	-	Saro_0117	-	hypothetical protein
118	 63.26	0	119850..120875	+	341	87198144	-	Saro_0118	-	uroporphyrinogen decarboxylase
119	 58.45	-2	120973..121398	+	141	87198145	-	Saro_0119	-	hypothetical protein
120	 60.78	-1	121800..123056	+	418	87198146	rho	Saro_0120	-	transcription termination factor Rho
121	 65.77	0	123162..125729	+	855	87198147	-	Saro_0121	-	helicase-like
122	 64.26	0	125747..126037	+	96	87198148	-	Saro_0122	-	RNA-binding S4
123	 60.47	-1	126051..126389	+	112	87198149	-	Saro_0123	-	4Fe-4S ferredoxin, iron-sulfur binding
124	 60.38	-1	126726..127250	+	174	87198150	-	Saro_0124	-	CarD family transcriptional regulator
125	 63.74	0	127423..128208	+	261	87198151	-	Saro_0125	-	hypothetical protein
126	 66.67	0	128212..129159	-	315	87198152	-	Saro_0126	-	translation factor SUA5
127	 64.81	0	129220..130938	+	572	87198153	-	Saro_0127	-	acyl-CoA dehydrogenase-like
128	 66.30	0	130935..131750	+	271	87198154	-	Saro_0128	-	hypothetical protein
129	 63.21	0	131784..133289	-	501	87198155	-	Saro_0129	-	L-sorbosone dehydrogenase
130	 64.18	0	133354..133836	+	160	87198156	-	Saro_0130	-	putative GAF sensor protein
131	 65.52	0	133981..134679	+	232	87198157	-	Saro_0131	-	17 kDa surface antigen
132	 61.30	-1	134788..135942	-	384	87198158	-	Saro_0132	-	long-chain acyl-CoA dehydrogenase
133	 66.67	0	136094..137041	-	315	87198159	-	Saro_0133	-	chromosome segregation DNA-binding protein
134	 61.90	-1	137038..137814	-	258	87198160	-	Saro_0134	-	chromosome segregation ATPase
135	 60.75	-1	137811..138503	-	230	87198161	-	Saro_0135	-	methyltransferase GidB
136	 65.81	0	138500..140359	-	619	87198162	-	Saro_0136	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
137	 68.34	0	140445..141758	-	437	87198163	trmE	Saro_0137	-	tRNA modification GTPase TrmE
138	 60.92	-1	141791..142051	-	86	87198164	-	Saro_0138	-	hypothetical protein
139	 61.66	-1	142162..142860	+	232	87198165	-	Saro_0139	-	carboxymethylenebutenolidase
140	 60.72	-1	142956..143342	+	128	87198166	-	Saro_0140	-	hypothetical protein
141	 66.38	0	143400..143744	-	114	87198167	-	Saro_0141	-	DNA-directed RNA polymerase subunit omega
142	 65.21	0	143844..145358	-	504	87198168	-	Saro_0142	-	replicative DNA helicase
143	 60.61	-1	145505..145999	+	164	87198169	-	Saro_0143	-	hypothetical protein
144	 66.81	0	146028..146723	+	231	87198170	-	Saro_0144	-	glycoside hydrolase family protein
145	 67.81	0	146720..147157	+	145	87198171	-	Saro_0145	-	cytidine deaminase
146	 60.72	-1	147206..147760	+	184	87198172	dcd	Saro_0146	-	deoxycytidine triphosphate deaminase
147	 67.35	0	147894..149066	+	390	87198173	-	Saro_0147	-	saccharopine dehydrogenase
148	 61.30	-1	149157..149603	-	148	87198174	-	Saro_0148	-	globin
149	 64.88	0	149630..150133	+	167	87198175	-	Saro_0149	-	BadM/Rrf2 family transcriptional regulator
150	 70.65	+1	150130..150531	-	133	87198176	-	Saro_0150	-	hypothetical protein
151	 66.87	0	150718..151713	+	331	87198177	-	Saro_0151	-	PfkB
152	 67.35	0	151725..153050	-	441	87198178	-	Saro_0152	-	aminopeptidase P
153	 64.34	0	153225..153653	-	142	87198179	-	Saro_0153	-	signal-transduction protein
154	 61.22	-1	153797..154090	+	97	87198180	-	Saro_0154	-	hypothetical protein
155	 67.68	0	154071..154466	+	131	87198181	-	Saro_0155	-	HesB/YadR/YfhF
156	 62.69	0	154525..155304	+	259	87198182	-	Saro_0156	-	exodeoxyribonuclease III
157	 65.90	0	155351..155611	+	86	87198183	-	Saro_0157	-	hypothetical protein
158	 64.90	0	155613..156290	+	225	87198184	-	Saro_0158	-	methionine sulfoxide reductase A
159	 63.69	0	156327..156797	+	156	87198185	-	Saro_0159	-	transcriptional regulator
160	 66.20	0	156827..158104	+	425	87198186	-	Saro_0160	-	general substrate transporter
161	 65.16	0	158147..160069	+	640	87198187	-	Saro_0161	-	1-deoxy-D-xylulose-5-phosphate synthase
162	 62.70	0	160099..160779	-	226	87198188	-	Saro_0162	-	NnrU
163	 62.85	0	160892..163015	-	707	87198189	-	Saro_0163	-	amino acid/peptide transporter
164	 64.36	0	163049..163438	+	129	87198190	-	Saro_0164	-	GntR family transcriptional regulator
165	 63.48	0	163591..163872	+	93	87198191	-	Saro_0165	-	histone-like DNA-binding protein
166	 63.62	0	164436..165092	+	218	87198192	-	Saro_0166	-	hypothetical protein
167	 64.49	0	165119..166585	-	488	87198193	-	Saro_0167	-	sulfotransferase
168	 62.23	0	166719..169919	-	1066	87198194	-	Saro_0168	-	TonB-dependent receptor
169	 68.07	0	170278..171132	-	284	87198195	-	Saro_0169	-	peptidase M23B
170	 63.73	0	171151..171354	-	67	87198196	-	Saro_0170	-	hypothetical protein
171	 70.19	+1	171381..172742	-	453	87198197	-	Saro_0171	-	exodeoxyribonuclease VII large subunit
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.