IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1049	 63.05	0	1093126..1095501	+	791	87199075	-	Saro_1053	-	TonB-dependent receptor
1050	 64.76	0	1095516..1097246	+	576	87199076	-	Saro_1054	-	amidohydrolase-like
1051	 70.11	+1	1097674..1097847	-	57	87199077	-	Saro_1055	-	hypothetical protein
1052	 70.97	+1	1097844..1098842	-	332	87199078	-	Saro_1056	-	ribonuclease
1053	 70.30	+1	1098832..1099437	-	201	87199079	-	Saro_1057	-	maf protein
1054	 62.96	0	1099437..1099733	-	98	87199080	-	Saro_1058	-	translation initiation factor 1
1055	 67.71	0	1100033..1102534	+	833	87199081	-	Saro_1059	-	TonB-dependent receptor
1056	 66.16	0	1102691..1104667	+	658	87199082	uvrC	Saro_1060	-	excinuclease ABC subunit C
1057	 65.63	0	1104677..1105735	+	352	87199083	-	Saro_1061	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1058	 68.69	+1	1105871..1106659	+	262	87199084	-	Saro_1062	-	hypothetical protein
1059	 68.87	+1	1106656..1107108	+	150	87199085	-	Saro_1063	-	hypothetical protein
1060	 67.11	0	1107109..1108011	-	300	87199086	-	Saro_1064	-	palmitoyl-CoA hydrolase
1061	 64.40	0	1108056..1108937	-	293	87199087	-	Saro_1065	-	transcription factor jumonji, jmjC
1062	 65.03	0	1108934..1110097	-	387	87199088	-	Saro_1066	-	hypothetical protein
1063	 64.02	0	1110255..1112408	-	717	87199089	hppA	Saro_1067	-	membrane-bound proton-translocating pyrophosphatase
1064	 68.52	+1	1112500..1113414	-	304	87199090	-	Saro_1068	-	thiamine-monophosphate kinase
1065	 64.96	0	1113487..1114659	+	390	87199091	-	Saro_1069	-	acetyl-CoA acetyltransferase
1066	 66.41	0	1114693..1115478	+	261	87199092	-	Saro_1070	-	short-chain dehydrogenase/reductase SDR
1067	 64.72	0	1115540..1116412	+	290	87199093	-	Saro_1071	-	enoyl-CoA hydratase
1068	 61.03	-1	1116409..1117047	+	212	87199094	-	Saro_1072	-	TetR family transcriptional regulator
1069	 63.40	0	1117252..1117710	+	152	87199095	-	Saro_1073	-	MarR family transcriptional regulator
1070	 66.07	0	1117707..1118714	+	335	87199096	-	Saro_1074	-	fumarylacetoacetate (FAA) hydrolase
1071	 64.38	0	1118771..1119778	-	335	87199097	-	Saro_1075	-	type II secretion system protein
1072	 63.49	0	1119798..1120772	-	324	87199098	-	Saro_1076	-	type II secretion system protein
1073	 65.65	0	1120816..1122090	-	424	87199099	-	Saro_1077	-	response regulator receiver domain-containing protein
1074	 67.41	0	1122095..1122766	-	223	87199100	-	Saro_1078	-	hypothetical protein
1075	 65.99	0	1122781..1124400	-	539	87199101	-	Saro_1079	-	type II and III secretion system protein
1076	 66.96	0	1124402..1125430	-	342	87199102	-	Saro_1080	-	Flp pilus assembly CpaB
1077	 64.67	0	1125506..1126006	-	166	87199103	-	Saro_1081	-	peptidase A24A, prepilin type IV
1078	 66.77	0	1126076..1127068	+	330	87199104	-	Saro_1082	-	lysophospholipase L2
1079	 69.55	+1	1127065..1128174	+	369	87199105	-	Saro_1083	-	FAD dependent oxidoreductase
1080	 56.83	-2	1128266..1128448	+	60	87199106	-	Saro_1084	-	hypothetical protein
1081	 66.20	0	1128544..1128975	-	143	87199107	-	Saro_1085	-	RNase HI
1082	 68.39	0	1128972..1129958	-	328	87199108	-	Saro_1086	-	homoserine kinase
1083	 68.42	0	1129961..1130929	-	322	87199109	-	Saro_1087	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1084	 69.68	+1	1131056..1131718	+	220	87199110	-	Saro_1088	-	hypothetical protein
1085	 64.78	0	1131811..1133559	+	582	87199111	-	Saro_1089	-	arginyl-tRNA synthetase
1086	 68.13	0	1133585..1134334	+	249	87199112	-	Saro_1090	-	hypothetical protein
1087	 67.70	0	1134430..1135497	+	355	87199113	-	Saro_1091	-	Beta-N-acetylhexosaminidase
1088	 66.42	0	1135497..1136294	+	265	87199114	-	Saro_1092	-	condensin subunit ScpA
1089	 66.51	0	1136291..1136938	+	215	87199115	-	Saro_1093	-	condensin subunit ScpB
1090	 65.08	0	1137023..1137274	+	83	87199116	-	Saro_1094	-	twin arginine-targeting protein translocase
1091	 68.53	+1	1137301..1137729	+	142	87199117	-	Saro_1095	-	twin-arginine translocation protein TatB
1092	 62.14	0	1137726..1138565	+	279	87199118	-	Saro_1096	-	Sec-independent protein translocase TatC
1093	 69.01	+1	1138736..1140442	-	568	87199119	-	Saro_1097	-	amidohydrolase
1094	 69.01	+1	1140439..1141377	-	312	87199120	-	Saro_1098	-	3-hydroxyisobutyrate dehydrogenase
1095	 65.69	0	1141436..1141846	+	136	87199121	-	Saro_1099	-	hypothetical protein
1096	 67.93	0	1141884..1143149	+	421	87199122	-	Saro_1100	-	threonine dehydratase
1097	 63.63	0	1143360..1144214	+	284	87199123	-	Saro_1101	-	arginyl-tRNA-protein transferase
1098	 67.70	0	1144285..1146414	+	709	87199124	-	Saro_1102	-	surface antigen (D15)
1099	 67.64	0	1146414..1150610	+	1398	87199125	-	Saro_1103	-	hypothetical protein
1100	 66.39	0	1150672..1152096	-	474	87199126	-	Saro_1104	-	aldehyde dehydrogenase
1101	 60.48	-1	1152213..1152503	-	96	87199127	-	Saro_1105	-	hypothetical protein
1102	 65.10	0	1152536..1154830	+	764	87199128	-	Saro_1106	-	periplasmic sensor diguanylate cyclase/phosphodiesterase
1103	 66.87	0	1154865..1155350	-	161	87199129	-	Saro_1107	-	CHAP
1104	 63.19	0	1155575..1156984	-	469	87199130	-	Saro_1108	-	L-glutamine synthetase
1105	 62.83	0	1157136..1157474	-	112	87199131	-	Saro_1109	-	nitrogen regulatory protein P-II
1106	 65.85	0	1157759..1158610	-	283	87199132	-	Saro_1110	-	methionine aminopeptidase, type I
1107	 65.43	0	1158645..1159451	-	268	87199133	-	Saro_1111	-	hypothetical protein
1108	 67.68	0	1159505..1160887	+	460	87199134	-	Saro_1112	-	leucyl aminopeptidase
1109	 65.96	0	1160890..1161315	+	141	87199135	-	Saro_1113	-	hypothetical protein
1110	 68.28	0	1161312..1162241	+	309	87199136	-	Saro_1114	-	N-acetyl-gamma-glutamyl-phosphate reductase
1111	 61.95	-1	1162325..1162642	-	105	87199137	-	Saro_1115	-	ferredoxin
1112	 66.34	0	1162772..1163389	+	205	87199138	-	Saro_1116	-	HhH-GPD
1113	 67.54	0	1163430..1164230	+	266	87199139	-	Saro_1117	-	short chain dehydrogenase
1114	 63.92	0	1164233..1164523	-	96	87199140	-	Saro_1118	-	pterin-4-alpha-carbinolamine dehydratase
1115	 68.06	0	1164585..1165160	+	191	87199141	-	Saro_1119	-	heme exporter protein CcmA
1116	 71.19	+1	1165157..1165819	+	220	87199142	-	Saro_1120	-	cytochrome c-type biogenesis protein CcmB
1117	 64.66	0	1165884..1166882	+	332	87199143	-	Saro_1121	-	cysteine synthase A
1118	 69.27	+1	1166897..1167280	+	127	87199144	-	Saro_1122	-	hypothetical protein
1119	 68.83	+1	1167283..1168020	+	245	87199145	-	Saro_1123	-	hypothetical protein
1120	 65.61	0	1168272..1168838	+	188	87199146	-	Saro_1124	-	hypothetical protein
1121	 66.67	0	1168835..1169824	+	329	87199147	-	Saro_1125	-	methyltransferase
1122	 65.27	0	1169821..1170681	+	286	87199148	-	Saro_1126	-	hypothetical protein
1123	 65.29	0	1170678..1172423	+	581	87199149	-	Saro_1127	-	peptidoglycan glycosyltransferase
1124	 67.91	0	1172420..1173868	+	482	87199150	murE	Saro_1128	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1125	 67.82	0	1173865..1175334	+	489	87199151	-	Saro_1129	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1126	 65.54	0	1175335..1176399	+	354	87199152	-	Saro_1130	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1127	 67.27	0	1176396..1177727	+	443	87199153	-	Saro_1131	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1128	 63.90	0	1177766..1178959	+	397	87199154	-	Saro_1132	-	cell cycle protein
1129	 68.12	0	1178956..1180122	+	388	87199155	murG	Saro_1133	-	N-acetylglucosaminyl transferase
1130	 65.33	0	1180119..1181543	+	474	87199156	murC	Saro_1134	-	UDP-N-acetylmuramate--L-alanine ligase
1131	 65.66	0	1181540..1182433	+	297	87199157	-	Saro_1135	-	UDP-N-acetylmuramate dehydrogenase
1132	 64.97	0	1182477..1183418	+	313	87199158	-	Saro_1136	-	D-alanine--D-alanine ligase
1133	 67.50	0	1183423..1184385	+	320	87199159	-	Saro_1137	-	cell division protein FtsQ
1134	 65.96	0	1184393..1185673	+	426	87199160	-	Saro_1138	-	cell division protein FtsA
1135	 67.07	0	1185868..1187343	+	491	87199161	-	Saro_1139	-	cell division protein FtsZ
1136	 69.45	+1	1187406..1189598	+	730	87199162	-	Saro_1140	-	hypothetical protein
1137	 65.67	0	1189801..1190304	+	167	87199163	-	Saro_1141	-	hypothetical protein
1138	 69.75	+1	1190387..1191196	+	269	87199164	-	Saro_1142	-	pyrroline-5-carboxylate reductase
1139	 63.31	0	1191311..1192054	+	247	87199165	-	Saro_1143	-	hypothetical protein
1140	 66.12	0	1192227..1192958	+	243	87199166	-	Saro_1144	-	hypothetical protein
1141	 65.25	0	1193278..1194336	+	352	161760696	obgE	Saro_1145	-	GTPase ObgE
1142	 69.40	+1	1194468..1195601	+	377	87199168	-	Saro_1146	-	gamma-glutamyl kinase
1143	 68.95	+1	1195601..1196521	+	306	87199169	-	Saro_1147	-	NAD-dependent epimerase/dehydratase
1144	 60.51	-1	1196568..1197038	+	156	87199170	-	Saro_1148	-	hypothetical protein
1145	 63.31	0	1197056..1197472	+	138	87199171	-	Saro_1149	-	hypothetical protein
1146	 70.68	+1	1197469..1200012	-	847	87199172	-	Saro_1150	-	hypothetical protein
1147	 69.99	+1	1200009..1200701	-	230	87199173	-	Saro_1151	-	ABC transporter related
1148	 67.11	0	1200770..1201453	+	227	87199174	-	Saro_1152	-	lipolytic enzyme, G-D-S-L
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.