IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.30   STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1006	 68.09	0	1051962..1052735	+	257	87199032	-	Saro_1010	-	imidazole glycerol phosphate synthase subunit HisF
1007	 66.36	0	1053185..1053508	+	107	87199033	-	Saro_1011	-	phosphoribosyl-ATP pyrophosphatase
1008	 64.02	0	1053510..1053887	+	125	87199034	-	Saro_1012	-	histidine triad (HIT) protein
1009	 66.45	0	1053963..1054427	+	154	87199035	-	Saro_1013	-	4-hydroxybenzoyl-CoA thioesterase
1010	 66.10	0	1054424..1055125	+	233	87199036	-	Saro_1014	-	MotA/TolQ/ExbB proton channel
1011	 68.43	0	1055129..1055581	+	150	87199037	-	Saro_1015	-	biopolymer transport protein ExbD/TolR
1012	 70.41	+1	1055592..1056473	+	293	87199038	-	Saro_1016	-	hypothetical protein
1013	 65.95	0	1056470..1057855	+	461	87199039	tolB	Saro_1017	-	translocation protein TolB
1014	 67.64	0	1057969..1058481	+	170	87199040	-	Saro_1018	-	OmpA/MotB
1015	 66.67	0	1058602..1059135	+	177	87199041	-	Saro_1019	-	heat shock protein DnaJ-like
1016	 62.63	0	1059132..1060022	+	296	87199042	-	Saro_1020	-	phytanoyl-CoA dioxygenase
1017	 68.00	0	1059940..1061142	-	400	87199043	-	Saro_1021	-	polynucleotide adenylyltransferase region
1018	 66.67	0	1061135..1061749	-	204	87199044	-	Saro_1022	-	NUDIX hydrolase
1019	 67.54	0	1061746..1062315	-	189	87199045	-	Saro_1023	-	hypothetical protein
1020	 66.48	0	1062338..1062874	-	178	87199046	-	Saro_1024	-	acetyltransferase-like
1021	 65.40	0	1063077..1064498	+	473	87199047	-	Saro_1025	-	cytochrome bd ubiquinol oxidase, subunit I
1022	 66.67	0	1064498..1065496	+	332	87199048	-	Saro_1026	-	cytochrome d ubiquinol oxidase, subunit II
1023	 66.05	0	1065483..1065644	+	53	87199049	-	Saro_1027	-	hypothetical protein
1024	 67.53	0	1065625..1067019	-	464	87199050	-	Saro_1028	-	XRE family transcriptional regulator
1025	 63.35	0	1067166..1068761	+	531	87199051	-	Saro_1029	-	isocitrate lyase
1026	 60.38	-1	1068826..1068984	+	52	87199052	-	Saro_1030	-	hypothetical protein
1027	 65.67	0	1069183..1071492	+	769	87199053	-	Saro_1031	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1028	 67.99	0	1071489..1072166	-	225	87199054	-	Saro_1032	-	phosphoribosylformylglycinamidine synthase I
1029	 62.82	0	1072181..1072414	-	77	87199055	-	Saro_1033	-	phosphoribosylformylglycinamidine synthetase PurS
1030	 65.85	0	1072837..1073451	+	204	87199056	-	Saro_1034	-	TetR family transcriptional regulator
1031	 70.46	+1	1073448..1074422	+	324	87199057	-	Saro_1035	-	secretion protein HlyD
1032	 69.20	+1	1074419..1075405	+	328	87199058	-	Saro_1036	-	ABC transporter related
1033	 65.97	0	1075402..1076550	+	382	87199059	-	Saro_1037	-	hypothetical protein
1034	 68.67	+1	1076575..1079421	-	948	87199060	-	Saro_1038	-	peptidase M16-like
1035	 60.00	-1	1079480..1079674	-	64	87199061	-	Saro_1039	-	hypothetical protein
1036	 54.79	-2	1079674..1079976	-	100	87199062	-	Saro_1040	-	hypothetical protein
1037	 62.85	0	1080291..1081076	-	261	87199063	-	Saro_1041	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1038	 65.73	0	1081361..1081786	+	141	87199064	-	Saro_1042	-	hypothetical protein
1039	 68.03	0	1081783..1082370	+	195	87199065	-	Saro_1043	-	hypothetical protein
1040	 66.67	0	1082367..1083260	+	297	87199066	-	Saro_1044	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1041	 66.67	0	1083306..1085522	+	738	87199067	-	Saro_1045	-	branched-chain alpha-keto acid dehydrogenase E1 component
1042	 68.34	0	1085515..1086528	+	337	87199068	-	Saro_1046	-	acyl-carrier domain-containing protein
1043	 70.32	+1	1086525..1086989	+	154	87199069	-	Saro_1047	-	protein tyrosine phosphatase
1044	 67.96	0	1087170..1087943	-	257	87199070	-	Saro_1048	-	DeoR family transcriptional regulator
1045	 66.57	0	1088007..1089080	-	357	87199071	-	Saro_1049	-	rhamnose-proton symporter
1046	 66.06	0	1089104..1090249	-	381	87199072	lldD	Saro_1050	-	L-lactate dehydrogenase
1047	 67.72	0	1090260..1091687	-	475	87199073	-	Saro_1051	-	carbohydrate kinase, FGGY
1048	 68.81	+1	1091834..1092811	-	325	87199074	-	Saro_1052	-	regulatory protein, LuxR
1049	 63.05	0	1093126..1095501	+	791	87199075	-	Saro_1053	-	TonB-dependent receptor
1050	 64.76	0	1095516..1097246	+	576	87199076	-	Saro_1054	-	amidohydrolase-like
1051	 70.11	+1	1097674..1097847	-	57	87199077	-	Saro_1055	-	hypothetical protein
1052	 70.97	+1	1097844..1098842	-	332	87199078	-	Saro_1056	-	ribonuclease
1053	 70.30	+1	1098832..1099437	-	201	87199079	-	Saro_1057	-	maf protein
1054	 62.96	0	1099437..1099733	-	98	87199080	-	Saro_1058	-	translation initiation factor 1
1055	 67.71	0	1100033..1102534	+	833	87199081	-	Saro_1059	-	TonB-dependent receptor
1056	 66.16	0	1102691..1104667	+	658	87199082	uvrC	Saro_1060	-	excinuclease ABC subunit C
1057	 65.63	0	1104677..1105735	+	352	87199083	-	Saro_1061	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1058	 68.69	+1	1105871..1106659	+	262	87199084	-	Saro_1062	-	hypothetical protein
1059	 68.87	+1	1106656..1107108	+	150	87199085	-	Saro_1063	-	hypothetical protein
1060	 67.11	0	1107109..1108011	-	300	87199086	-	Saro_1064	-	palmitoyl-CoA hydrolase
1061	 64.40	0	1108056..1108937	-	293	87199087	-	Saro_1065	-	transcription factor jumonji, jmjC
1062	 65.03	0	1108934..1110097	-	387	87199088	-	Saro_1066	-	hypothetical protein
1063	 64.02	0	1110255..1112408	-	717	87199089	hppA	Saro_1067	-	membrane-bound proton-translocating pyrophosphatase
1064	 68.52	+1	1112500..1113414	-	304	87199090	-	Saro_1068	-	thiamine-monophosphate kinase
1065	 64.96	0	1113487..1114659	+	390	87199091	-	Saro_1069	-	acetyl-CoA acetyltransferase
1066	 66.41	0	1114693..1115478	+	261	87199092	-	Saro_1070	-	short-chain dehydrogenase/reductase SDR
1067	 64.72	0	1115540..1116412	+	290	87199093	-	Saro_1071	-	enoyl-CoA hydratase
1068	 61.03	-1	1116409..1117047	+	212	87199094	-	Saro_1072	-	TetR family transcriptional regulator
1069	 63.40	0	1117252..1117710	+	152	87199095	-	Saro_1073	-	MarR family transcriptional regulator
1070	 66.07	0	1117707..1118714	+	335	87199096	-	Saro_1074	-	fumarylacetoacetate (FAA) hydrolase
1071	 64.38	0	1118771..1119778	-	335	87199097	-	Saro_1075	-	type II secretion system protein
1072	 63.49	0	1119798..1120772	-	324	87199098	-	Saro_1076	-	type II secretion system protein
1073	 65.65	0	1120816..1122090	-	424	87199099	-	Saro_1077	-	response regulator receiver domain-containing protein
1074	 67.41	0	1122095..1122766	-	223	87199100	-	Saro_1078	-	hypothetical protein
1075	 65.99	0	1122781..1124400	-	539	87199101	-	Saro_1079	-	type II and III secretion system protein
1076	 66.96	0	1124402..1125430	-	342	87199102	-	Saro_1080	-	Flp pilus assembly CpaB
1077	 64.67	0	1125506..1126006	-	166	87199103	-	Saro_1081	-	peptidase A24A, prepilin type IV
1078	 66.77	0	1126076..1127068	+	330	87199104	-	Saro_1082	-	lysophospholipase L2
1079	 69.55	+1	1127065..1128174	+	369	87199105	-	Saro_1083	-	FAD dependent oxidoreductase
1080	 56.83	-2	1128266..1128448	+	60	87199106	-	Saro_1084	-	hypothetical protein
1081	 66.20	0	1128544..1128975	-	143	87199107	-	Saro_1085	-	RNase HI
1082	 68.39	0	1128972..1129958	-	328	87199108	-	Saro_1086	-	homoserine kinase
1083	 68.42	0	1129961..1130929	-	322	87199109	-	Saro_1087	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1084	 69.68	+1	1131056..1131718	+	220	87199110	-	Saro_1088	-	hypothetical protein
1085	 64.78	0	1131811..1133559	+	582	87199111	-	Saro_1089	-	arginyl-tRNA synthetase
1086	 68.13	0	1133585..1134334	+	249	87199112	-	Saro_1090	-	hypothetical protein
1087	 67.70	0	1134430..1135497	+	355	87199113	-	Saro_1091	-	Beta-N-acetylhexosaminidase
1088	 66.42	0	1135497..1136294	+	265	87199114	-	Saro_1092	-	condensin subunit ScpA
1089	 66.51	0	1136291..1136938	+	215	87199115	-	Saro_1093	-	condensin subunit ScpB
1090	 65.08	0	1137023..1137274	+	83	87199116	-	Saro_1094	-	twin arginine-targeting protein translocase
1091	 68.53	+1	1137301..1137729	+	142	87199117	-	Saro_1095	-	twin-arginine translocation protein TatB
1092	 62.14	0	1137726..1138565	+	279	87199118	-	Saro_1096	-	Sec-independent protein translocase TatC
1093	 69.01	+1	1138736..1140442	-	568	87199119	-	Saro_1097	-	amidohydrolase
1094	 69.01	+1	1140439..1141377	-	312	87199120	-	Saro_1098	-	3-hydroxyisobutyrate dehydrogenase
1095	 65.69	0	1141436..1141846	+	136	87199121	-	Saro_1099	-	hypothetical protein
1096	 67.93	0	1141884..1143149	+	421	87199122	-	Saro_1100	-	threonine dehydratase
1097	 63.63	0	1143360..1144214	+	284	87199123	-	Saro_1101	-	arginyl-tRNA-protein transferase
1098	 67.70	0	1144285..1146414	+	709	87199124	-	Saro_1102	-	surface antigen (D15)
1099	 67.64	0	1146414..1150610	+	1398	87199125	-	Saro_1103	-	hypothetical protein
1100	 66.39	0	1150672..1152096	-	474	87199126	-	Saro_1104	-	aldehyde dehydrogenase
1101	 60.48	-1	1152213..1152503	-	96	87199127	-	Saro_1105	-	hypothetical protein
1102	 65.10	0	1152536..1154830	+	764	87199128	-	Saro_1106	-	periplasmic sensor diguanylate cyclase/phosphodiesterase
1103	 66.87	0	1154865..1155350	-	161	87199129	-	Saro_1107	-	CHAP
1104	 63.19	0	1155575..1156984	-	469	87199130	-	Saro_1108	-	L-glutamine synthetase
1105	 62.83	0	1157136..1157474	-	112	87199131	-	Saro_1109	-	nitrogen regulatory protein P-II
65.30	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.