IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
894	 66.57	+1	976580..977608	+	342	75675093	-	Nwi_0898	-	NAD-dependent epimerase/dehydratase
895	 64.44	0	981530..981799	+	89	75675094	-	Nwi_0901	-	hypothetical protein
896	 61.81	0	981759..982211	-	150	75675095	-	Nwi_0902	-	hypothetical protein
897	 58.73	-1	982432..982746	+	104	75675096	-	Nwi_0903	-	hypothetical protein
898	 61.72	0	982843..984339	-	498	75675097	-	Nwi_0904	-	hypothetical protein
899	 61.61	0	984742..985077	-	111	75675098	-	Nwi_0905	-	hypothetical protein
900	 57.34	-1	986729..987157	+	142	75675099	-	Nwi_0906	-	cupin region
901	 64.57	0	987283..989904	-	873	75675100	-	Nwi_0907	-	hypothetical protein
902	 69.87	+2	989901..991025	-	374	75675101	-	Nwi_0908	-	exonuclease SbcD
903	 63.27	0	991028..997036	-	2002	75675102	-	Nwi_0909	-	putative DNA helicase
904	 60.51	0	997300..997575	-	91	75675103	-	Nwi_0910	-	hypothetical protein
905	 65.75	0	997630..1000125	+	831	75675104	-	Nwi_0911	-	heavy metal translocating P-type ATPase
906	 63.70	0	1000183..1000620	-	145	75675105	-	Nwi_0912	-	hypothetical protein
907	 55.94	-1	1001153..1001758	+	201	75675106	-	Nwi_0913	-	manganese and iron superoxide dismutase
908	 65.87	0	1002119..1002874	+	251	75675107	-	Nwi_0914	-	ABC transporter, ATPase subunit
909	 63.22	0	1002881..1003750	+	289	75675108	-	Nwi_0915	-	ABC-type Mn2+/Zn2+ transport systems permease components
910	 65.15	0	1003764..1004687	+	307	75675109	-	Nwi_0916	-	periplasmic solute binding protein
911	 60.49	0	1004812..1005864	+	350	75675110	-	Nwi_0917	-	cobalamin synthesis protein, CobW
912	 65.68	0	1005864..1006877	+	337	75675111	-	Nwi_0918	-	WD-40 repeat-containing protein
913	 53.03	-2	1006874..1007137	-	87	75675112	-	Nwi_0919	-	hypothetical protein
914	 67.40	+1	1007187..1007459	+	90	75675113	-	Nwi_0920	-	hypothetical protein
915	 61.10	0	1007820..1009256	-	478	75675114	-	Nwi_0921	-	homospermidine synthase
916	 60.09	0	1009808..1010263	-	151	75675115	-	Nwi_0922	-	transcription elongation factor GreA/GreB region
917	 69.17	+1	1010612..1011211	-	199	75675116	-	Nwi_0923	-	GCN5-related N-acetyltransferase
918	 65.00	0	1011346..1012488	-	380	75675117	-	Nwi_0924	-	Orn/DAP/Arg decarboxylase 2
919	 60.54	0	1013162..1013422	-	86	75675118	-	Nwi_0925	-	hypothetical protein
920	 65.46	0	1013607..1015685	+	692	75675119	-	Nwi_0926	-	peptidase M3A and M3B, thimet/oligopeptidase F
921	 61.90	0	1015837..1016235	-	132	75675120	-	Nwi_0927	-	hypothetical protein
922	 61.69	0	1016317..1017360	+	347	75675121	hemH	Nwi_0928	-	ferrochelatase
923	 62.26	0	1017580..1018578	+	332	75675122	-	Nwi_0929	-	Band 7 protein
924	 67.11	+1	1018602..1019048	+	148	75675123	-	Nwi_0930	-	hypothetical protein
925	 65.34	0	1019065..1020042	-	325	75675124	-	Nwi_0931	-	sugar isomerase, KpsF/GutQ family protein
926	 64.30	0	1020371..1022062	+	563	75675125	-	Nwi_0932	-	hypothetical protein
927	 61.17	0	1022129..1022692	-	187	75675126	-	Nwi_0933	-	hypothetical protein
928	 61.98	0	1022952..1023356	-	134	75675127	-	Nwi_0934	-	LysR family transcriptional regulator
929	 63.67	0	1023424..1025961	-	845	75675128	-	Nwi_0935	-	MscS mechanosensitive ion channel
930	 62.68	0	1026441..1026716	+	91	75675129	-	Nwi_0936	-	hypothetical protein
931	 63.82	0	1026845..1028074	+	409	75675130	-	Nwi_0937	-	putative pigment protein
932	 61.69	0	1028083..1028625	+	180	75675131	-	Nwi_0938	-	flavin reductase-like, FMN-binding
933	 61.75	0	1028790..1030010	+	406	75675132	-	Nwi_0939	-	hypothetical protein
934	 66.19	+1	1030184..1031236	+	350	75675133	-	Nwi_0940	-	hypothetical protein
935	 59.55	0	1031582..1033732	+	716	75675134	-	Nwi_0941	-	TonB-dependent receptor
936	 67.42	+1	1033918..1034451	+	177	75675135	-	Nwi_0942	-	hypothetical protein
937	 65.59	0	1034534..1035460	+	308	75675136	-	Nwi_0943	-	di-haem cytochrome c peroxidase
938	 56.46	-1	1035627..1036067	-	146	75675137	-	Nwi_0944	-	hypothetical protein
939	 64.03	0	1036226..1037743	+	505	75675138	-	Nwi_0945	-	hypothetical protein
940	 63.44	0	1037949..1040795	+	948	75675139	-	Nwi_0946	-	alpha amylase
941	 54.05	-2	1040956..1041177	+	73	75675140	-	Nwi_0947	-	hypothetical protein
942	 57.08	-1	1041603..1041842	-	79	75675141	-	Nwi_0948	-	hypothetical protein
943	 62.35	0	1041842..1042651	+	269	75675142	-	Nwi_0949	-	aspartate/glutamate/uridylate kinase
944	 66.31	+1	1042664..1043497	+	277	75675143	-	Nwi_0950	-	aspartate/glutamate/uridylate kinase
945	 60.15	0	1043589..1045706	-	705	75675144	-	Nwi_0951	-	para-aminobenzoate synthase, component I
946	 54.09	-2	1046030..1046824	+	264	75675145	-	Nwi_0952	-	universal stress protein UspA
947	 53.59	-2	1047028..1047333	-	101	75675146	-	Nwi_0953	-	hypothetical protein
948	 60.39	0	1047904..1048620	+	238	75675147	-	Nwi_0954	-	ISRm2011-2 transposase protein
949	 64.85	0	1048623..1049339	-	238	75675148	-	Nwi_0955	-	hypothetical protein
950	 57.54	-1	1049545..1049829	-	94	75675149	-	Nwi_0956	-	hypothetical protein
951	 57.24	-1	1050572..1051600	-	342	75675150	-	Nwi_0957	-	LuxR family transcriptional regulator
952	 61.30	0	1051814..1052353	-	179	75675151	-	Nwi_0958	-	hypothetical protein
953	 57.44	-1	1052540..1053124	+	194	75675152	-	Nwi_0959	-	hypothetical protein
954	 57.29	-1	1053359..1054243	+	294	75675153	-	Nwi_0960	-	hypothetical protein
955	 57.05	-1	1054376..1056298	+	640	75675154	-	Nwi_0961	-	hypothetical protein
956	 61.39	0	1056343..1058349	+	668	75675155	-	Nwi_0962	-	type I secretion system ATPase, PrtD
957	 60.71	0	1058387..1059730	+	447	75675156	-	Nwi_0963	-	type I secretion membrane fusion protein, HlyD
958	 56.15	-1	1059788..1061308	+	506	75675157	-	Nwi_0964	-	TPR and WD-40 repeat-containing protein
959	 61.35	0	1061550..1063091	-	513	75675158	-	Nwi_0965	-	nitrate reductase, beta subunit
960	 58.11	-1	1063391..1064173	-	260	75675159	-	Nwi_0966	-	hypothetical protein
961	 64.27	0	1064401..1064817	+	138	75675160	-	Nwi_0967	-	hypothetical protein
962	 62.46	0	1064910..1066454	-	514	75675161	-	Nwi_0968	-	tyrosinase
963	 54.01	-2	1066719..1067429	+	236	75675162	-	Nwi_0969	-	hypothetical protein
964	 53.68	-2	1067621..1067851	-	76	75675163	-	Nwi_0970	-	hypothetical protein
965	 62.78	0	1068251..1068790	+	179	75675164	-	Nwi_0971	-	methionine sulfoxide reductase A
966	 61.90	0	1068877..1069275	+	132	75675165	-	Nwi_0972	-	transposase
967	 64.77	0	1069290..1069658	+	122	75675166	-	Nwi_0973	-	transposase, IS4
968	 66.82	+1	1069775..1070431	-	218	75675167	mobA	Nwi_0974	-	molybdopterin-guanine dinucleotide biosynthesis protein A
969	 58.50	-1	1070561..1070866	+	101	75675168	-	Nwi_0975	-	SirA-like protein
970	 60.39	0	1071056..1071772	-	238	75675169	-	Nwi_0976	-	ISRm2011-2 transposase protein
971	 64.83	0	1072081..1073058	-	325	75675170	hemE	Nwi_0977	-	uroporphyrinogen decarboxylase
972	 66.00	0	1073296..1073895	-	199	75675171	-	Nwi_0978	-	TrpR binding protein WrbA
973	 64.09	0	1073970..1074668	-	232	75675172	-	Nwi_0979	-	pirin
974	 66.34	+1	1074831..1075745	+	304	75675173	-	Nwi_0980	-	LysR family transcriptional regulator
975	 64.91	0	1075955..1076239	+	94	75675174	-	Nwi_0981	-	hypothetical protein
976	 62.80	0	1076270..1077484	-	404	75675175	-	Nwi_0982	-	two component diguanylate phophodiesterase
977	 53.17	-2	1077822..1077947	+	41	75675176	rpmJ	Nwi_0983	-	50S ribosomal protein L36
978	 62.16	0	1078278..1078943	+	221	75675177	-	Nwi_0984	-	TPR repeat-containing protein
979	 55.56	-1	1079215..1079520	-	101	75675178	-	Nwi_0985	-	hypothetical protein
980	 64.93	0	1079737..1081173	-	478	75675179	-	Nwi_0986	-	pyruvate kinase
981	 61.88	0	1081170..1081754	-	194	75675180	-	Nwi_0987	-	hypothetical protein
982	 59.74	0	1081937..1082239	+	100	75675181	-	Nwi_0988	-	hypothetical protein
983	 57.41	-1	1082412..1082681	+	89	75675182	-	Nwi_0989	-	hypothetical protein
984	 66.29	+1	1082980..1084569	-	529	75675183	-	Nwi_0990	-	hypothetical protein
985	 61.45	0	1084847..1087282	-	811	75675184	-	Nwi_0991	-	hypothetical protein
986	 63.26	0	1087575..1089071	-	498	75675185	-	Nwi_0992	-	helix-turn-helix, Fis-type
987	 63.26	0	1089251..1091128	+	625	75675186	-	Nwi_0993	-	peptidase M3B, oligoendopeptidase-related clade 3
988	 52.94	-2	1091528..1091680	+	50	75675187	-	Nwi_0994	-	hypothetical protein
989	 63.84	0	1091776..1092906	+	376	75675188	-	Nwi_0995	-	alanine dehydrogenase/PNT
990	 58.49	-1	1093024..1093341	+	105	75675189	-	Nwi_0996	-	NAD(P) transhydrogenase subunit alpha part
991	 63.59	0	1093500..1094897	+	465	75675190	-	Nwi_0997	-	NAD/NADP transhydrogenase beta subunit
992	 57.69	-1	1094927..1095394	+	155	75675191	-	Nwi_0998	-	hypothetical protein
993	 63.54	0	1095758..1096045	-	95	75675192	rpsU	Nwi_0999	-	30S ribosomal protein S21
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.