IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
854	 63.95	0	932247..932909	+	220	75675053	-	Nwi_0858	-	TENA/THI-4 protein
855	 60.49	0	932922..933407	+	161	75675054	-	Nwi_0859	-	hypothetical protein
856	 65.43	0	933407..934615	+	402	75675055	-	Nwi_0860	-	conjugation TrbI-like protein
857	 60.96	0	934612..934839	+	75	75675056	-	Nwi_0861	-	hypothetical protein
858	 58.49	-1	935136..935624	+	162	75675057	-	Nwi_0862	-	Phage Gp37Gp68
859	 58.18	-1	935386..936057	-	223	75675058	-	Nwi_0863	-	hypothetical protein
860	 54.48	-2	936674..937543	+	289	75675059	-	Nwi_0864	-	beta-lactamase-like
861	 61.88	0	937751..938731	-	326	75675060	-	Nwi_0865	-	helix-turn-helix, Fis-type
862	 65.07	0	938728..939102	-	124	75675061	-	Nwi_0866	-	transposase IS3/IS911
863	 57.00	-1	939014..939706	-	230	75675062	-	Nwi_0867	-	hypothetical protein
864	 54.47	-2	939919..940689	-	256	75675063	-	Nwi_0868	-	hypothetical protein
865	 60.53	0	940869..941243	+	124	75675064	-	Nwi_0869	-	transposase IS3/IS911
866	 59.60	0	941240..942301	+	353	75675065	-	Nwi_0870	-	helix-turn-helix, Fis-type
867	 65.07	0	942213..942587	+	124	75675066	-	Nwi_0871	-	transposase IS3/IS911
868	 61.88	0	942584..943564	+	326	75675067	-	Nwi_0872	-	helix-turn-helix, Fis-type
869	 51.56	-2	944538..944762	-	74	75675068	-	Nwi_0873	-	hypothetical protein
870	 67.11	+1	944812..949281	-	1489	75675069	-	Nwi_0874	-	hypothetical protein
871	 64.75	0	949281..951314	-	677	75675070	-	Nwi_0875	-	surface antigen (D15)
872	 56.53	-1	951773..952837	-	354	75675071	-	Nwi_0876	-	choloylglycine hydrolase
873	 59.86	0	953085..953642	-	185	75675072	-	Nwi_0877	-	hypothetical protein
874	 58.38	-1	953933..954487	+	184	75675073	-	Nwi_0878	-	hypothetical protein
875	 55.23	-1	954772..955908	+	378	75675074	-	Nwi_0879	-	TonB-dependent receptor
876	 59.21	0	955905..956762	+	285	75675075	-	Nwi_0880	-	hypothetical protein
877	 65.90	0	957163..958599	-	478	75675076	-	Nwi_0881	-	GntR family transcriptional regulator
878	 62.05	0	958862..959641	+	259	75675077	-	Nwi_0882	-	hypothetical protein
879	 62.60	0	959684..960568	+	294	75675078	-	Nwi_0883	-	dihydrodipicolinate synthetase
880	 60.16	0	960829..962349	-	506	75675079	-	Nwi_0884	-	hypothetical protein
881	 57.56	-1	962444..964036	-	530	75675080	-	Nwi_0885	-	hypothetical protein
882	 60.29	0	964039..965652	-	537	75675081	-	Nwi_0886	-	hypothetical protein
883	 57.07	-1	965707..966957	-	416	75675082	-	Nwi_0887	-	hypothetical protein
884	 53.76	-2	967400..967585	+	61	75675083	-	Nwi_0888	-	outer membrane ferric siderophore receptor
885	 60.90	0	967844..969508	-	554	75675084	-	Nwi_0889	-	hypothetical protein
886	 58.22	-1	969550..970437	-	295	75675085	-	Nwi_0890	-	beta-lactamase-like
887	 61.97	0	970777..971415	+	212	75675086	-	Nwi_0891	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
888	 57.32	-1	971412..971807	+	131	75675087	-	Nwi_0892	-	ArsR family transcriptional regulator
889	 59.91	0	971908..972351	-	147	75675088	-	Nwi_0893	-	hypothetical protein
890	 61.45	0	972786..973283	+	165	75675089	-	Nwi_0894	-	ECF subfamily RNA polymerase sigma-24 factor
891	 63.86	0	973483..974445	+	320	75675090	-	Nwi_0895	-	FecR protein
892	 67.33	+1	974569..975018	+	149	75675091	-	Nwi_0896	-	TonB-dependent receptor
893	 65.05	0	974988..976529	+	513	75675092	-	Nwi_0897	-	hypothetical protein
894	 66.57	+1	976580..977608	+	342	75675093	-	Nwi_0898	-	NAD-dependent epimerase/dehydratase
895	 64.44	0	981530..981799	+	89	75675094	-	Nwi_0901	-	hypothetical protein
896	 61.81	0	981759..982211	-	150	75675095	-	Nwi_0902	-	hypothetical protein
897	 58.73	-1	982432..982746	+	104	75675096	-	Nwi_0903	-	hypothetical protein
898	 61.72	0	982843..984339	-	498	75675097	-	Nwi_0904	-	hypothetical protein
899	 61.61	0	984742..985077	-	111	75675098	-	Nwi_0905	-	hypothetical protein
900	 57.34	-1	986729..987157	+	142	75675099	-	Nwi_0906	-	cupin region
901	 64.57	0	987283..989904	-	873	75675100	-	Nwi_0907	-	hypothetical protein
902	 69.87	+2	989901..991025	-	374	75675101	-	Nwi_0908	-	exonuclease SbcD
903	 63.27	0	991028..997036	-	2002	75675102	-	Nwi_0909	-	putative DNA helicase
904	 60.51	0	997300..997575	-	91	75675103	-	Nwi_0910	-	hypothetical protein
905	 65.75	0	997630..1000125	+	831	75675104	-	Nwi_0911	-	heavy metal translocating P-type ATPase
906	 63.70	0	1000183..1000620	-	145	75675105	-	Nwi_0912	-	hypothetical protein
907	 55.94	-1	1001153..1001758	+	201	75675106	-	Nwi_0913	-	manganese and iron superoxide dismutase
908	 65.87	0	1002119..1002874	+	251	75675107	-	Nwi_0914	-	ABC transporter, ATPase subunit
909	 63.22	0	1002881..1003750	+	289	75675108	-	Nwi_0915	-	ABC-type Mn2+/Zn2+ transport systems permease components
910	 65.15	0	1003764..1004687	+	307	75675109	-	Nwi_0916	-	periplasmic solute binding protein
911	 60.49	0	1004812..1005864	+	350	75675110	-	Nwi_0917	-	cobalamin synthesis protein, CobW
912	 65.68	0	1005864..1006877	+	337	75675111	-	Nwi_0918	-	WD-40 repeat-containing protein
913	 53.03	-2	1006874..1007137	-	87	75675112	-	Nwi_0919	-	hypothetical protein
914	 67.40	+1	1007187..1007459	+	90	75675113	-	Nwi_0920	-	hypothetical protein
915	 61.10	0	1007820..1009256	-	478	75675114	-	Nwi_0921	-	homospermidine synthase
916	 60.09	0	1009808..1010263	-	151	75675115	-	Nwi_0922	-	transcription elongation factor GreA/GreB region
917	 69.17	+1	1010612..1011211	-	199	75675116	-	Nwi_0923	-	GCN5-related N-acetyltransferase
918	 65.00	0	1011346..1012488	-	380	75675117	-	Nwi_0924	-	Orn/DAP/Arg decarboxylase 2
919	 60.54	0	1013162..1013422	-	86	75675118	-	Nwi_0925	-	hypothetical protein
920	 65.46	0	1013607..1015685	+	692	75675119	-	Nwi_0926	-	peptidase M3A and M3B, thimet/oligopeptidase F
921	 61.90	0	1015837..1016235	-	132	75675120	-	Nwi_0927	-	hypothetical protein
922	 61.69	0	1016317..1017360	+	347	75675121	hemH	Nwi_0928	-	ferrochelatase
923	 62.26	0	1017580..1018578	+	332	75675122	-	Nwi_0929	-	Band 7 protein
924	 67.11	+1	1018602..1019048	+	148	75675123	-	Nwi_0930	-	hypothetical protein
925	 65.34	0	1019065..1020042	-	325	75675124	-	Nwi_0931	-	sugar isomerase, KpsF/GutQ family protein
926	 64.30	0	1020371..1022062	+	563	75675125	-	Nwi_0932	-	hypothetical protein
927	 61.17	0	1022129..1022692	-	187	75675126	-	Nwi_0933	-	hypothetical protein
928	 61.98	0	1022952..1023356	-	134	75675127	-	Nwi_0934	-	LysR family transcriptional regulator
929	 63.67	0	1023424..1025961	-	845	75675128	-	Nwi_0935	-	MscS mechanosensitive ion channel
930	 62.68	0	1026441..1026716	+	91	75675129	-	Nwi_0936	-	hypothetical protein
931	 63.82	0	1026845..1028074	+	409	75675130	-	Nwi_0937	-	putative pigment protein
932	 61.69	0	1028083..1028625	+	180	75675131	-	Nwi_0938	-	flavin reductase-like, FMN-binding
933	 61.75	0	1028790..1030010	+	406	75675132	-	Nwi_0939	-	hypothetical protein
934	 66.19	+1	1030184..1031236	+	350	75675133	-	Nwi_0940	-	hypothetical protein
935	 59.55	0	1031582..1033732	+	716	75675134	-	Nwi_0941	-	TonB-dependent receptor
936	 67.42	+1	1033918..1034451	+	177	75675135	-	Nwi_0942	-	hypothetical protein
937	 65.59	0	1034534..1035460	+	308	75675136	-	Nwi_0943	-	di-haem cytochrome c peroxidase
938	 56.46	-1	1035627..1036067	-	146	75675137	-	Nwi_0944	-	hypothetical protein
939	 64.03	0	1036226..1037743	+	505	75675138	-	Nwi_0945	-	hypothetical protein
940	 63.44	0	1037949..1040795	+	948	75675139	-	Nwi_0946	-	alpha amylase
941	 54.05	-2	1040956..1041177	+	73	75675140	-	Nwi_0947	-	hypothetical protein
942	 57.08	-1	1041603..1041842	-	79	75675141	-	Nwi_0948	-	hypothetical protein
943	 62.35	0	1041842..1042651	+	269	75675142	-	Nwi_0949	-	aspartate/glutamate/uridylate kinase
944	 66.31	+1	1042664..1043497	+	277	75675143	-	Nwi_0950	-	aspartate/glutamate/uridylate kinase
945	 60.15	0	1043589..1045706	-	705	75675144	-	Nwi_0951	-	para-aminobenzoate synthase, component I
946	 54.09	-2	1046030..1046824	+	264	75675145	-	Nwi_0952	-	universal stress protein UspA
947	 53.59	-2	1047028..1047333	-	101	75675146	-	Nwi_0953	-	hypothetical protein
948	 60.39	0	1047904..1048620	+	238	75675147	-	Nwi_0954	-	ISRm2011-2 transposase protein
949	 64.85	0	1048623..1049339	-	238	75675148	-	Nwi_0955	-	hypothetical protein
950	 57.54	-1	1049545..1049829	-	94	75675149	-	Nwi_0956	-	hypothetical protein
951	 57.24	-1	1050572..1051600	-	342	75675150	-	Nwi_0957	-	LuxR family transcriptional regulator
952	 61.30	0	1051814..1052353	-	179	75675151	-	Nwi_0958	-	hypothetical protein
953	 57.44	-1	1052540..1053124	+	194	75675152	-	Nwi_0959	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.