IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
774	 50.63	-2	866119..867147	+	342	75674973	-	Nwi_0777	-	nitrate reductase, delta subunit
775	 50.74	-2	867182..867859	+	225	75674974	-	Nwi_0778	-	nitrate reductase gamma subunit
776	 52.59	-2	868091..869347	+	418	75674975	-	Nwi_0779	-	major facilitator transporter
777	 51.68	-2	869453..870526	+	357	75674976	-	Nwi_0780	-	C4-dicarboxylate transporter/malic acid transport protein
778	 58.74	-1	870660..871025	-	121	75674977	-	Nwi_0781	-	transposase (class I)
779	 60.64	0	871679..872392	-	237	75674978	-	Nwi_0782	-	integrase, catalytic region
780	 65.07	0	872656..873030	-	124	75674979	-	Nwi_0783	-	transposase IS3/IS911
781	 58.43	-1	873123..873389	-	88	75674980	-	Nwi_0784	-	prevent-host-death protein
782	 57.18	-1	873442..874263	+	273	75674981	-	Nwi_0785	-	hypothetical protein
783	 55.66	-1	874270..875250	+	326	75674982	-	Nwi_0786	-	hypothetical protein
784	 67.45	+1	875243..875497	-	84	75674983	-	Nwi_0787	-	hypothetical protein
785	 64.02	0	875639..875827	-	62	75674984	-	Nwi_0788	-	hypothetical protein
786	 68.07	+1	875852..876421	-	189	75674985	-	Nwi_0789	-	hypothetical protein
787	 62.11	0	876496..876846	-	116	75674986	-	Nwi_0790	-	hypothetical protein
788	 66.09	+1	876859..877557	-	232	75674987	-	Nwi_0791	-	hypothetical protein
789	 64.94	0	877569..881510	-	1313	75674988	-	Nwi_0792	-	gene transfer agent (GTA) like protein
790	 62.88	0	881609..881872	+	87	75674989	-	Nwi_0793	-	hypothetical protein
791	 64.29	0	881869..882330	-	153	75674990	-	Nwi_0794	-	putative phage cell wall peptidase, NlpC/P60
792	 65.99	0	882327..883214	-	295	75674991	-	Nwi_0795	-	hypothetical protein
793	 64.13	0	883211..883801	-	196	75674992	-	Nwi_0796	-	hypothetical protein
794	 66.70	+1	883801..887148	-	1115	75674993	-	Nwi_0797	-	phage-related minor tail protein
795	 59.18	0	887145..887291	-	48	75674994	-	Nwi_0798	-	hypothetical protein
796	 63.87	0	887453..887809	-	118	75674995	-	Nwi_0799	-	hypothetical protein
797	 64.01	0	887850..888791	-	313	75674996	-	Nwi_0800	-	hypothetical protein
798	 65.75	0	888816..889250	-	144	75674997	-	Nwi_0801	-	hypothetical protein
799	 65.04	0	889264..889941	-	225	75674998	-	Nwi_0802	-	hypothetical protein
800	 56.65	-1	889963..890571	+	202	75674999	-	Nwi_0803	-	hypothetical protein
801	 58.06	-1	890583..890942	+	119	75675000	-	Nwi_0804	-	hypothetical protein
802	 63.52	0	890946..891263	-	105	75675001	-	Nwi_0805	-	hypothetical protein
803	 66.38	+1	891260..891610	-	116	75675002	-	Nwi_0806	-	hypothetical protein
804	 67.05	+1	891640..893709	-	689	75675003	-	Nwi_0807	-	peptidase U35, phage prohead HK97
805	 65.49	0	893727..895262	-	511	75675004	-	Nwi_0808	-	Phage portal protein, lambda
806	 61.43	0	895262..895471	-	69	75675005	-	Nwi_0809	-	hypothetical protein
807	 65.91	0	895490..897334	-	614	75675006	-	Nwi_0810	-	phage terminase GpA
808	 68.06	+1	897282..897854	-	190	75675007	-	Nwi_0811	-	hypothetical protein
809	 65.46	0	897963..898211	+	82	75675008	-	Nwi_0812	-	hypothetical protein
810	 65.36	0	898236..898694	+	152	75675009	-	Nwi_0813	-	hypothetical protein
811	 66.67	+1	899224..899928	-	234	75675010	-	Nwi_0814	-	hypothetical protein
812	 66.02	0	899925..900851	-	308	75675011	-	Nwi_0815	-	hypothetical protein
813	 65.73	0	900844..901587	-	247	75675012	-	Nwi_0816	-	ParB-like nuclease
814	 64.10	0	901990..902418	-	142	75675013	-	Nwi_0817	-	hypothetical protein
815	 68.35	+1	902415..902948	-	177	75675014	-	Nwi_0818	-	hypothetical protein
816	 65.96	0	902963..903670	-	235	75675015	-	Nwi_0819	-	hypothetical protein
817	 66.62	+1	903885..906116	-	743	75675016	-	Nwi_0820	-	ATPase
818	 64.47	0	906196..906831	-	211	75675017	-	Nwi_0821	-	hypothetical protein
819	 66.16	+1	906873..907658	-	261	75675018	-	Nwi_0822	-	hypothetical protein
820	 63.74	0	907655..907927	-	90	75675019	-	Nwi_0823	-	hypothetical protein
821	 66.34	+1	907924..908229	-	101	75675020	-	Nwi_0824	-	hypothetical protein
822	 65.86	0	908504..909250	+	248	75675021	-	Nwi_0825	-	hypothetical protein
823	 61.86	0	909250..909540	+	96	75675022	-	Nwi_0826	-	XRE family transcriptional regulator
824	 66.98	+1	909571..910206	+	211	75675023	-	Nwi_0827	-	hypothetical protein
825	 57.16	-1	910233..910916	-	227	75675024	-	Nwi_0828	-	hypothetical protein
826	 58.20	-1	910873..911781	-	302	75675025	-	Nwi_0829	-	SMF protein
827	 58.43	-1	911937..912203	-	88	75675026	-	Nwi_0830	-	XRE family transcriptional regulator
828	 65.50	0	912285..913487	-	400	75675027	-	Nwi_0831	-	Phage integrase
829	 59.85	0	913692..914087	-	131	75675028	-	Nwi_0832	-	hypothetical protein
830	 55.18	-2	914089..915141	-	350	75675029	-	Nwi_0833	-	cobyrinic acid a,c-diamide synthase
831	 60.67	0	915690..916523	-	277	75675030	-	Nwi_0834	-	recombinase
832	 57.95	-1	917155..917670	-	171	75675031	-	Nwi_0836	-	GCN5-related N-acetyltransferase
833	 60.30	0	917658..917924	-	88	75675032	-	Nwi_0837	-	hypothetical protein
834	 60.05	0	918447..919307	+	286	75675033	-	Nwi_0838	-	integrase, catalytic region
835	 63.98	0	919670..919930	+	86	75675034	-	Nwi_0839	-	hypothetical protein
836	 63.17	0	920293..920607	+	104	75675035	-	Nwi_0840	-	hypothetical protein
837	 57.94	-1	920701..921204	+	167	75675036	-	Nwi_0841	-	hypothetical protein
838	 60.66	0	921358..921723	+	121	75675037	-	Nwi_0842	-	ISBm1, transposase orfA
839	 62.50	0	922284..922499	-	71	75675038	-	Nwi_0843	-	XRE family transcriptional regulator
840	 67.04	+1	922723..922989	+	88	75675039	-	Nwi_0844	-	hypothetical protein
841	 67.08	+1	923230..923472	+	80	75675040	-	Nwi_0845	-	hypothetical protein
842	 67.48	+1	923481..924344	+	287	75675041	-	Nwi_0846	-	replication protein A
843	 66.93	+1	924490..925248	+	252	75675042	-	Nwi_0847	-	DNA methylase N-4/N-6
844	 63.55	0	925417..925737	+	106	75675043	-	Nwi_0848	-	hypothetical protein
845	 68.45	+1	925734..926294	+	186	75675044	-	Nwi_0849	-	conjugal transfer protein precursor
846	 66.86	+1	926329..927339	+	336	75675045	-	Nwi_0850	-	lytic transglycosylase, catalytic
847	 59.50	0	927508..928149	-	213	75675046	-	Nwi_0851	-	ISRm2011-2 transposase protein
848	 60.68	0	928101..928451	-	116	75675047	-	Nwi_0852	-	transposase
849	 64.19	0	928579..929670	+	363	75675048	-	Nwi_0853	-	transposase IS116/IS110/IS902
850	 63.88	0	929793..930581	+	262	75675049	-	Nwi_0854	-	hypothetical protein
851	 66.67	+1	930678..931334	+	218	75675050	-	Nwi_0855	-	hypothetical protein
852	 62.35	0	931448..931702	+	84	75675051	-	Nwi_0856	-	prevent-host-death protein
853	 64.30	0	931699..932121	+	140	75675052	-	Nwi_0857	-	PilT protein
854	 63.95	0	932247..932909	+	220	75675053	-	Nwi_0858	-	TENA/THI-4 protein
855	 60.49	0	932922..933407	+	161	75675054	-	Nwi_0859	-	hypothetical protein
856	 65.43	0	933407..934615	+	402	75675055	-	Nwi_0860	-	conjugation TrbI-like protein
857	 60.96	0	934612..934839	+	75	75675056	-	Nwi_0861	-	hypothetical protein
858	 58.49	-1	935136..935624	+	162	75675057	-	Nwi_0862	-	Phage Gp37Gp68
859	 58.18	-1	935386..936057	-	223	75675058	-	Nwi_0863	-	hypothetical protein
860	 54.48	-2	936674..937543	+	289	75675059	-	Nwi_0864	-	beta-lactamase-like
861	 61.88	0	937751..938731	-	326	75675060	-	Nwi_0865	-	helix-turn-helix, Fis-type
862	 65.07	0	938728..939102	-	124	75675061	-	Nwi_0866	-	transposase IS3/IS911
863	 57.00	-1	939014..939706	-	230	75675062	-	Nwi_0867	-	hypothetical protein
864	 54.47	-2	939919..940689	-	256	75675063	-	Nwi_0868	-	hypothetical protein
865	 60.53	0	940869..941243	+	124	75675064	-	Nwi_0869	-	transposase IS3/IS911
866	 59.60	0	941240..942301	+	353	75675065	-	Nwi_0870	-	helix-turn-helix, Fis-type
867	 65.07	0	942213..942587	+	124	75675066	-	Nwi_0871	-	transposase IS3/IS911
868	 61.88	0	942584..943564	+	326	75675067	-	Nwi_0872	-	helix-turn-helix, Fis-type
869	 51.56	-2	944538..944762	-	74	75675068	-	Nwi_0873	-	hypothetical protein
870	 67.11	+1	944812..949281	-	1489	75675069	-	Nwi_0874	-	hypothetical protein
871	 64.75	0	949281..951314	-	677	75675070	-	Nwi_0875	-	surface antigen (D15)
872	 56.53	-1	951773..952837	-	354	75675071	-	Nwi_0876	-	choloylglycine hydrolase
873	 59.86	0	953085..953642	-	185	75675072	-	Nwi_0877	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.