IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
639	 61.88	0	719819..720799	+	326	75674838	-	Nwi_0640	-	helix-turn-helix, Fis-type
640	 53.10	-2	721125..722804	-	559	75674839	-	Nwi_0641	-	hypothetical protein
641	 61.31	0	722973..724130	-	385	75674840	-	Nwi_0642	-	DegT/DnrJ/EryC1/StrS aminotransferase
642	 55.29	-1	724127..725128	-	333	75674841	-	Nwi_0643	-	Short-chain dehydrogenase/reductase
643	 56.20	-1	726120..726845	-	241	75674842	-	Nwi_0645	-	acylneuraminate cytidylyltransferase
644	 53.62	-2	727128..727748	-	206	75674843	-	Nwi_0646	-	hypothetical protein
645	 61.63	0	727843..728895	-	350	75674844	-	Nwi_0647	-	antifreeze-like protein
646	 60.31	0	729064..729849	-	261	75674845	-	Nwi_0648	-	NUDIX hydrolase
647	 64.56	0	729843..730505	-	220	75674846	-	Nwi_0649	-	HAD family hydrolase
648	 60.93	0	730505..731323	-	272	75674847	-	Nwi_0650	-	hypothetical protein
649	 61.11	0	731492..732193	-	233	75674848	-	Nwi_0651	-	hypothetical protein
650	 50.65	-2	732334..732639	+	101	75674849	-	Nwi_0652	-	hypothetical protein
651	 60.96	0	732820..734415	+	531	75674850	-	Nwi_0653	-	beta-lactamase
652	 59.50	0	734618..735259	-	213	75674851	-	Nwi_0654	-	ISRm2011-2 transposase protein
653	 60.68	0	735211..735561	-	116	75674852	-	Nwi_0655	-	transposase
654	 63.60	0	736051..736506	+	151	75674853	-	Nwi_0656	-	sigma-70 region 2
655	 63.31	0	736647..737660	+	337	75674854	-	Nwi_0657	-	FecR protein
656	 60.50	0	737772..739295	+	507	75674855	-	Nwi_0658	-	secretin/TonB
657	 65.07	0	739349..739723	+	124	75674856	-	Nwi_0659	-	transposase IS3/IS911
658	 61.88	0	739720..740700	+	326	75674857	-	Nwi_0660	-	helix-turn-helix, Fis-type
659	 56.75	-1	740713..741852	+	379	75674858	-	Nwi_0661	-	TonB-dependent receptor
660	 59.36	0	742325..743104	+	259	75674859	-	Nwi_0662	-	XRE family transcriptional regulator
661	 54.94	-2	743125..743559	+	144	75674860	-	Nwi_0663	-	hypothetical protein
662	 61.99	0	743747..745285	-	512	75674861	-	Nwi_0664	-	putative porin
663	 58.39	-1	746258..747151	+	297	75674862	-	Nwi_0665	-	branched chain amino acid ABC transporter permease
664	 57.71	-1	747148..748197	+	349	75674863	-	Nwi_0666	-	ABC-type branched-chain amino acid transport system permease component
665	 59.36	0	748223..749494	+	423	75674864	-	Nwi_0667	-	ABC-type branched-chain amino acid transport systems periplasmic component
666	 59.46	0	749491..750309	+	272	75674865	-	Nwi_0668	-	ABC-type branched-chain amino acid transport systems ATPase component
667	 56.03	-1	750309..751013	+	234	75674866	-	Nwi_0669	-	ABC-type branched-chain amino acid transport systems ATPase component
668	 55.83	-1	751218..751835	-	205	75674867	-	Nwi_0670	-	cytochrome c553
669	 60.00	0	751935..752774	-	279	75674868	-	Nwi_0671	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component
670	 55.51	-1	752771..753451	-	226	75674869	-	Nwi_0672	-	hypothetical protein
671	 59.66	0	753448..754275	-	275	75674870	-	Nwi_0673	-	binding-protein dependent transport system inner membrane protein
672	 55.65	-1	754312..755736	-	474	75674871	-	Nwi_0674	-	ABC transporter sulfonate/nitrate transport system substrate-binding protein
673	 58.37	-1	756106..756828	+	240	75674872	-	Nwi_0675	-	cyclic nucleotide-binding protein
674	 64.38	0	756829..757791	-	320	75674873	-	Nwi_0676	-	HEAT repeat-containing PBS lyase
675	 56.84	-1	757793..758026	-	77	75674874	-	Nwi_0677	-	4Fe-4S ferredoxin, iron-sulfur binding
676	 58.49	-1	758037..759773	-	578	75674875	-	Nwi_0678	-	putative oxidoreductase
677	 61.22	0	759787..760080	-	97	75674876	-	Nwi_0679	-	hypothetical protein
678	 59.17	0	760620..761339	+	239	75674877	-	Nwi_0680	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
679	 60.39	0	761314..761568	+	84	75674878	-	Nwi_0681	-	sulfonate/nitrate transport system substrate-binding protein
680	 63.64	0	761565..762755	+	396	75674879	-	Nwi_0682	-	alkanesulfonate monooxygenase
681	 62.33	0	762752..763558	+	268	75674880	-	Nwi_0683	-	binding-protein dependent transport system inner membrane protein
682	 67.76	+1	763738..764193	+	151	75674881	-	Nwi_0684	-	ABC transporter, ATPase subunit
683	 62.92	0	764177..764443	+	88	75674882	-	Nwi_0685	-	aliphatic sulfonate ABC transporter ATP-binding protein
684	 58.76	-1	764480..765061	+	193	75674883	-	Nwi_0686	-	flavin reductase-like, FMN-binding
685	 63.13	0	765730..767709	+	659	75674884	-	Nwi_0687	-	hypothetical protein
686	 61.88	0	767721..768200	+	159	75674885	-	Nwi_0688	-	3-demethylubiquinone-9 3-methyltransferase
687	 62.22	0	768213..769382	-	389	75674886	-	Nwi_0689	-	pyrroloquinoline quinone biosynthesis protein PqqE
688	 61.39	0	769379..769681	-	100	75674887	-	Nwi_0690	-	coenzyme PQQ synthesis D
689	 61.62	0	769650..770501	-	283	75674888	-	Nwi_0691	-	pyrroloquinoline quinone biosynthesis protein PqqC
690	 61.78	0	770446..771345	-	299	75674889	-	Nwi_0692	-	pyrroloquinoline quinone biosynthesis protein PqqB
691	 63.73	0	771724..772848	-	374	75674890	-	Nwi_0693	-	hypothetical protein
692	 59.31	0	773194..774594	+	466	75674891	-	Nwi_0694	-	cytochrome c Hsc
693	 61.05	0	774803..775906	+	367	75674892	-	Nwi_0695	-	glycosyl transferase, group 1
694	 63.19	0	775937..776626	+	229	75674893	-	Nwi_0696	-	UbiE/COQ5 methyltransferase
695	 55.02	-2	776874..777500	+	208	75674894	-	Nwi_0697	-	hypothetical protein
696	 63.06	0	777526..779190	-	554	75674895	-	Nwi_0698	-	aminotransferase class-III
697	 60.74	0	779231..780124	+	297	75674896	-	Nwi_0699	-	phosphatidylserine decarboxylase
698	 60.69	0	780447..782804	+	785	75674897	-	Nwi_0700	-	TonB-dependent receptor
699	 64.02	0	783183..783863	+	226	75674898	-	Nwi_0701	-	putative hydroxylase
700	 67.66	+1	784074..785183	+	369	75674899	-	Nwi_0702	-	FMN-dependent alpha-hydroxy acid dehydrogenase
701	 68.83	+1	785786..786988	+	400	75674900	-	Nwi_0703	-	MotA/TolQ/ExbB proton channel
702	 66.88	+1	786995..787465	+	156	75674901	-	Nwi_0704	-	biopolymer transport protein ExbD/TolR
703	 72.64	+2	787462..788265	+	267	75674902	-	Nwi_0705	-	TonB protein
704	 65.24	0	788265..788825	+	186	75674903	-	Nwi_0706	-	invasion associated locus B
705	 59.50	0	789068..789709	-	213	75674904	-	Nwi_0707	-	ISRm2011-2 transposase protein
706	 60.68	0	789661..790011	-	116	75674905	-	Nwi_0708	-	transposase
707	 52.53	-2	790808..791005	-	65	75674906	-	Nwi_0709	-	hypothetical protein
708	 58.63	-1	791600..792346	-	248	75674907	-	Nwi_0710	-	hypothetical protein
709	 58.58	-1	793053..793460	+	135	75674908	-	Nwi_0711	-	hypothetical protein
710	 61.08	0	793855..794409	-	184	75674909	-	Nwi_0712	-	cytochrome c, class I
711	 63.67	0	794740..796005	-	421	75674910	-	Nwi_0713	-	diaminopimelate decarboxylase
712	 66.01	0	796141..796446	-	101	75674911	-	Nwi_0714	-	hypothetical protein
713	 64.16	0	796508..797905	-	465	75674912	-	Nwi_0715	-	argininosuccinate lyase
714	 62.65	0	798045..798716	+	223	75674913	-	Nwi_0716	-	thioredoxin-like protein
715	 61.34	0	799266..803639	+	1457	75674914	-	Nwi_0717	-	hypothetical protein
716	 54.24	-2	803845..804174	-	109	75674915	-	Nwi_0718	-	hypothetical protein
717	 62.73	0	804319..806781	+	820	75674916	-	Nwi_0719	-	BFD-like (2Fe-2S)-binding region
718	 63.33	0	806778..807107	+	109	75674917	-	Nwi_0720	-	Rieske (2Fe-2S) region
719	 60.77	0	807624..808250	+	208	75674918	-	Nwi_0721	-	glutathione S-transferase
720	 64.91	0	808247..809215	+	322	75674919	-	Nwi_0722	-	hypothetical protein
721	 54.29	-2	809408..809617	+	69	75674920	-	Nwi_0723	-	hypothetical protein
722	 64.85	0	809694..810686	+	330	75674921	-	Nwi_0724	-	FecR protein
723	 60.57	0	810794..812695	+	633	75674922	-	Nwi_0725	-	TonB-dependent receptor protein
724	 60.56	0	812692..813231	+	179	75674923	-	Nwi_0726	-	ferric siderophore receptor
725	 67.78	+1	813841..814290	+	149	75674924	-	Nwi_0727	-	hypothetical protein
726	 62.75	0	814287..815561	+	424	75674925	-	Nwi_0728	-	hypothetical protein
727	 59.93	0	815576..816109	+	177	75674926	-	Nwi_0729	-	hypothetical protein
728	 61.16	0	816327..817706	+	459	75674927	-	Nwi_0730	-	type IV secretory pathway VirD4 components
729	 58.93	0	817732..818067	-	111	75674928	-	Nwi_0731	-	hypothetical protein
730	 54.52	-2	818064..818417	-	117	75674929	-	Nwi_0732	-	hypothetical protein
731	 56.35	-1	818733..819362	+	209	75674930	-	Nwi_0733	-	outer membrane protein
732	 63.37	0	819773..820015	-	80	75674931	-	Nwi_0734	-	IS511, transposase OrfB
733	 60.30	0	821024..823315	+	763	75674932	-	Nwi_0735	-	hypothetical protein
734	 57.21	-1	823419..824285	-	288	75674933	-	Nwi_0736	-	hypothetical protein
735	 60.22	0	824553..826181	+	542	75674934	-	Nwi_0737	-	resolvase
736	 64.19	0	826403..826927	+	174	75674935	-	Nwi_0738	-	hypothetical protein
737	 64.10	0	827115..827387	-	90	75674936	-	Nwi_0739	-	hypothetical protein
738	 62.35	0	827403..828005	+	200	75674937	-	Nwi_0740	-	hypothetical protein
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.