IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
556	 64.35	0	626435..627643	+	402	75674755	-	Nwi_0557	-	NnrS
557	 63.92	0	627710..627964	-	84	75674756	-	Nwi_0558	-	hypothetical protein
558	 63.61	0	628099..629112	-	337	75674757	-	Nwi_0559	-	HWE histidine kinase
559	 58.70	-1	629371..630198	+	275	75674758	-	Nwi_0560	-	cyclic nucleotide-binding
560	 60.45	0	630195..631079	+	294	75674759	-	Nwi_0561	-	hypothetical protein
561	 58.88	0	631446..631856	+	136	75674760	-	Nwi_0562	-	hypothetical protein
562	 61.87	0	632022..632417	+	131	75674761	-	Nwi_0563	-	hypothetical protein
563	 65.44	0	632436..633167	-	243	75674762	-	Nwi_0564	-	hypothetical protein
564	 66.49	+1	633258..633827	+	189	75674763	-	Nwi_0565	-	MarR family transcriptional regulator
565	 69.00	+1	633851..635137	-	428	75674764	-	Nwi_0566	-	hypothetical protein
566	 63.25	0	635408..637486	-	692	75674765	-	Nwi_0567	-	peptidase M23B
567	 60.47	0	643874..644470	+	198	75674766	-	Nwi_0568	-	hypothetical protein
568	 59.48	0	644552..644857	-	101	75674767	-	Nwi_0569	-	hypothetical protein
569	 64.69	0	644871..646391	+	506	75674768	-	Nwi_0570	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
570	 64.71	0	646661..646966	+	101	75674769	-	Nwi_0571	-	putative methylated-DNA-protein-cystein methyltransferase
571	 64.91	0	646926..647153	+	75	75674770	-	Nwi_0572	-	methylated-DNA-(protein)-cysteine S-methyltransferase
572	 67.59	+1	647374..649860	+	828	75674771	-	Nwi_0573	-	hypothetical protein
573	 65.14	0	649847..650239	-	130	75674772	-	Nwi_0574	-	response regulator receiver
574	 63.52	0	650243..651100	-	285	75674773	-	Nwi_0575	-	hypothetical protein
575	 63.33	0	651254..651913	+	219	75674774	-	Nwi_0576	-	ABC transporter, ATPase subunit
576	 66.98	+1	651933..652877	+	314	75674775	-	Nwi_0577	-	hypothetical protein
577	 65.15	0	652971..653696	+	241	75674776	-	Nwi_0578	-	hypothetical protein
578	 62.95	0	653775..654554	+	259	75674777	-	Nwi_0579	-	phospholipid/glycerol acyltransferase
579	 65.30	0	654680..655264	-	194	75674778	-	Nwi_0580	-	ChaC-like protein
580	 64.50	0	655447..656691	+	414	75674779	-	Nwi_0581	-	hypothetical protein
581	 66.03	0	656856..657791	-	311	75674780	-	Nwi_0582	-	cyclohexadienyl dehydrogenase
582	 63.66	0	657788..658885	-	365	75674781	-	Nwi_0583	-	histidinol-phosphate aminotransferase
583	 66.32	+1	658922..659776	-	284	75674782	-	Nwi_0584	-	hypothetical protein
584	 63.83	0	660098..661297	+	399	75674783	metX	Nwi_0585	-	homoserine O-acetyltransferase
585	 61.16	0	661299..661988	+	229	75674784	-	Nwi_0586	-	methionine biosynthesis MetW
586	 63.64	0	662316..662942	+	208	75674785	-	Nwi_0587	-	hypothetical protein
587	 63.71	0	663011..663787	-	258	75674786	-	Nwi_0588	-	hypothetical protein
588	 64.46	0	663965..666640	+	891	75674787	-	Nwi_0589	-	AAA ATPase
589	 64.12	0	666952..668793	+	613	75674788	-	Nwi_0590	-	sulphite reductase (NADPH) flavoprotein, alpha chain
590	 62.68	0	668804..670534	+	576	75674789	-	Nwi_0591	-	sulfite reductase subunit beta
591	 62.62	0	670769..671953	+	394	75674790	-	Nwi_0592	-	O-succinylhomoserine (thiol)-lyase
592	 63.28	0	672184..672567	-	127	75674791	-	Nwi_0593	-	hypothetical protein
593	 63.78	0	672891..674000	-	369	75674792	-	Nwi_0594	-	exodeoxyribonuclease V
594	 66.16	+1	674113..675492	-	459	75674793	-	Nwi_0595	-	helix-turn-helix, Fis-type
595	 64.67	0	675535..675885	-	116	75674794	-	Nwi_0596	-	flagellar motor switch protein
596	 63.30	0	675875..676528	-	217	75674795	fliH	Nwi_0597	-	flagellar assembly protein H
597	 62.82	0	676528..677619	-	363	75674796	fliG	Nwi_0598	-	flagellar motor switch protein G
598	 65.19	0	677626..679251	-	541	75674797	fliF	Nwi_0599	-	flagellar MS-ring protein
599	 64.49	0	679422..679697	-	91	75674798	-	Nwi_0600	-	hypothetical protein
600	 60.61	0	679882..680574	-	230	75674799	-	Nwi_0601	-	flagellar hook capping protein
601	 67.67	+1	680585..682171	-	528	75674800	-	Nwi_0602	-	flagellar hook-length control protein
602	 65.75	0	682417..683619	+	400	75674801	trmU	Nwi_0603	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
603	 62.44	0	683642..684280	+	212	75674802	-	Nwi_0604	-	UbiE/COQ5 methyltransferase
604	 70.37	+2	684455..684670	+	71	75674803	-	Nwi_0605	-	hypothetical protein
605	 63.25	0	684948..686672	+	574	75674804	-	Nwi_0606	-	TrkA-N, Sodium/hydrogen exchanger
606	 63.79	0	686812..687888	+	358	75674805	-	Nwi_0607	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
607	 61.89	0	687977..689191	+	404	75674806	-	Nwi_0608	-	acyl-CoA dehydrogenase
608	 64.94	0	689410..689640	+	76	75674807	-	Nwi_0609	-	hypothetical protein
609	 63.38	0	689695..690669	+	324	75674808	-	Nwi_0610	-	hypothetical protein
610	 70.79	+2	690674..692395	+	573	75674809	-	Nwi_0611	-	ABC transporter, transmembrane region
611	 61.18	0	692368..692622	-	84	75674810	-	Nwi_0612	-	hypothetical protein
612	 64.60	0	692826..693743	+	305	75674811	-	Nwi_0613	-	beta-lactamase-like
613	 64.47	0	693747..694700	-	317	75674812	-	Nwi_0614	-	hypothetical protein
614	 67.84	+1	694718..695656	-	312	75674813	-	Nwi_0615	-	LysR family transcriptional regulator
615	 65.87	0	695774..696655	+	293	75674814	-	Nwi_0616	-	pirin
616	 61.74	0	696880..698484	-	534	75674815	-	Nwi_0617	-	putative acyl-CoA synthetase
617	 64.29	0	698789..699670	+	293	75674816	-	Nwi_0618	-	extensin-like protein
618	 61.56	0	699874..700539	-	221	75674817	-	Nwi_0619	-	ErfK/YbiS/YcfS/YnhG
619	 58.04	-1	700598..700852	+	84	75674818	-	Nwi_0620	-	hypothetical protein
620	 66.29	+1	701521..702312	-	263	75674819	-	Nwi_0621	-	Short-chain dehydrogenase/reductase SDR
621	 65.11	0	702309..702950	-	213	75674820	-	Nwi_0622	-	pyridoxamine 5'-phosphate oxidase
622	 66.41	+1	703085..703471	+	128	75674821	-	Nwi_0623	-	hypothetical protein
623	 66.25	+1	703592..704542	+	316	75674822	-	Nwi_0624	-	heat shock protein DnaJ
624	 50.72	-2	704704..704910	-	68	75674823	-	Nwi_0625	-	hypothetical protein
625	 57.35	-1	705105..705737	-	210	75674824	-	Nwi_0626	-	autoinducer synthesis protein
626	 57.71	-1	705818..706543	-	241	75674825	-	Nwi_0627	-	LuxR family transcriptional regulator
627	 64.98	0	707141..707734	+	197	75674826	-	Nwi_0628	-	phosphoglycerate/bisphosphoglycerate mutase
628	 65.22	0	707876..708982	+	368	162139849	-	Nwi_0629	-	chorismate synthase
629	 60.78	0	709095..709400	-	101	75674828	clpS	Nwi_0630	-	ATP-dependent Clp protease adaptor
630	 69.03	+1	709531..710799	-	422	75674829	-	Nwi_0631	-	putative RNA methyltransferase
631	 67.46	+1	710792..711547	-	251	75674830	-	Nwi_0632	-	hemolysin A
632	 64.52	0	711876..713876	-	666	75674831	-	Nwi_0633	-	1-deoxy-D-xylulose-5-phosphate synthase
633	 61.51	0	714272..714523	-	83	75674832	-	Nwi_0634	-	exodeoxyribonuclease VII small subunit
634	 66.13	+1	714621..715550	-	309	75674833	-	Nwi_0635	-	histone deacetylase superfamily protein
635	 64.84	0	715632..716399	-	255	75674834	-	Nwi_0636	-	enoyl-CoA hydratase/isomerase
636	 68.07	+1	716730..718508	-	592	75674835	-	Nwi_0637	-	acyl-CoA dehydrogenase
637	 64.89	0	718905..719186	+	93	75674836	-	Nwi_0638	-	hypothetical protein
638	 65.07	0	719448..719822	+	124	75674837	-	Nwi_0639	-	transposase IS3/IS911
639	 61.88	0	719819..720799	+	326	75674838	-	Nwi_0640	-	helix-turn-helix, Fis-type
640	 53.10	-2	721125..722804	-	559	75674839	-	Nwi_0641	-	hypothetical protein
641	 61.31	0	722973..724130	-	385	75674840	-	Nwi_0642	-	DegT/DnrJ/EryC1/StrS aminotransferase
642	 55.29	-1	724127..725128	-	333	75674841	-	Nwi_0643	-	Short-chain dehydrogenase/reductase
643	 56.20	-1	726120..726845	-	241	75674842	-	Nwi_0645	-	acylneuraminate cytidylyltransferase
644	 53.62	-2	727128..727748	-	206	75674843	-	Nwi_0646	-	hypothetical protein
645	 61.63	0	727843..728895	-	350	75674844	-	Nwi_0647	-	antifreeze-like protein
646	 60.31	0	729064..729849	-	261	75674845	-	Nwi_0648	-	NUDIX hydrolase
647	 64.56	0	729843..730505	-	220	75674846	-	Nwi_0649	-	HAD family hydrolase
648	 60.93	0	730505..731323	-	272	75674847	-	Nwi_0650	-	hypothetical protein
649	 61.11	0	731492..732193	-	233	75674848	-	Nwi_0651	-	hypothetical protein
650	 50.65	-2	732334..732639	+	101	75674849	-	Nwi_0652	-	hypothetical protein
651	 60.96	0	732820..734415	+	531	75674850	-	Nwi_0653	-	beta-lactamase
652	 59.50	0	734618..735259	-	213	75674851	-	Nwi_0654	-	ISRm2011-2 transposase protein
653	 60.68	0	735211..735561	-	116	75674852	-	Nwi_0655	-	transposase
654	 63.60	0	736051..736506	+	151	75674853	-	Nwi_0656	-	sigma-70 region 2
655	 63.31	0	736647..737660	+	337	75674854	-	Nwi_0657	-	FecR protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.