IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
510	 65.53	0	568189..568893	+	234	75674709	-	Nwi_0511	-	phosphate regulon transcriptional regulatory protein phoB
511	 67.46	+1	569145..569651	-	168	75674710	-	Nwi_0512	-	GcrA cell cycle regulator
512	 65.43	0	570129..571340	+	403	162139850	argD	Nwi_0513	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
513	 64.72	0	571337..572263	+	308	75674712	-	Nwi_0514	-	ornithine carbamoyltransferase
514	 64.36	0	572490..573746	-	418	75674713	-	Nwi_0515	-	hypothetical protein
515	 64.50	0	573914..574558	-	214	75674714	-	Nwi_0516	-	hypothetical protein
516	 68.05	+1	574699..575205	+	168	75674715	-	Nwi_0517	-	hypothetical protein
517	 68.50	+1	575303..576121	-	272	75674716	-	Nwi_0518	-	inositol monophosphatase
518	 64.81	0	576272..576919	+	215	75674717	-	Nwi_0519	-	hypothetical protein
519	 63.14	0	577168..579834	+	888	75674718	-	Nwi_0520	-	CheA kinase
520	 61.15	0	579846..580316	+	156	75674719	-	Nwi_0521	-	CheW-like protein
521	 57.10	-1	580376..580741	+	121	75674720	-	Nwi_0522	-	CheY protein
522	 64.32	0	580784..582061	+	425	75674721	-	Nwi_0523	-	chemotaxis-specific methylesterase
523	 62.51	0	582058..582924	+	288	75674722	-	Nwi_0524	-	MCP methyltransferase, CheR-type
524	 58.26	-1	583135..583836	-	233	75674723	-	Nwi_0525	-	transcriptional regulatory protein
525	 64.56	0	584205..585530	+	441	75674724	fliI	Nwi_0526	-	flagellum-specific ATP synthase
526	 59.86	0	585635..586060	+	141	75674725	-	Nwi_0527	-	hypothetical protein
527	 55.22	-1	586293..586493	-	66	75674726	-	Nwi_0528	-	hypothetical protein
528	 63.57	0	586816..588945	-	709	75674727	flhA	Nwi_0529	-	flagellar biosynthesis protein FlhA
529	 62.05	0	589867..591576	+	569	75674728	-	Nwi_0530	-	methyl-accepting chemotaxis protein
530	 57.32	-1	592343..592738	+	131	75674729	-	Nwi_0531	-	hypothetical protein
531	 60.57	0	592798..593502	-	234	75674730	-	Nwi_0532	-	cobyrinic acid a,c-diamide synthase
532	 61.94	0	593906..594985	+	359	75674731	-	Nwi_0533	-	hemolysin-type calcium-binding region
533	 59.17	0	595282..595908	+	208	75674732	-	Nwi_0534	-	hypothetical protein
534	 60.27	0	596417..598651	+	744	75674733	-	Nwi_0535	-	ABC transporter, transmembrane region
535	 59.84	0	598641..599987	+	448	75674734	-	Nwi_0536	-	type I secretion membrane fusion protein, HlyD
536	 63.24	0	599987..602029	+	680	75674735	-	Nwi_0537	-	Sel1 repeat-containing protein
537	 58.82	0	602193..604397	+	734	75674736	-	Nwi_0538	-	lipopolysaccharide biosynthesis protein
538	 53.46	-2	604413..605336	+	307	75674737	-	Nwi_0539	-	glycosyl transferase family protein
539	 60.12	0	605461..606606	-	381	75674738	-	Nwi_0540	-	hypothetical protein
540	 56.59	-1	606862..608112	+	416	75674739	-	Nwi_0541	-	glycosyl transferase family protein
541	 57.45	-1	608338..608988	-	216	75674740	-	Nwi_0542	-	hypothetical protein
542	 61.21	0	608966..610267	-	433	75674741	-	Nwi_0543	-	UDP-glucose/GDP-mannose dehydrogenase
543	 60.11	0	610326..611393	-	355	75674742	-	Nwi_0544	-	dTDP-glucose 4,6-dehydratase
544	 60.39	0	611419..612294	-	291	75674743	-	Nwi_0545	-	glucose-1-phosphate thymidylyltransferase, long form
545	 58.79	-1	612357..612953	+	198	75674744	-	Nwi_0546	-	dTDP-4-dehydrorhamnose 3,5-epimerase related
546	 64.40	0	612965..613891	+	308	75674745	-	Nwi_0547	-	dTDP-4-dehydrorhamnose reductase
547	 64.16	0	613960..616314	-	784	75674746	-	Nwi_0548	-	glycosyl transferase family protein
548	 63.74	0	616317..618773	-	818	75674747	-	Nwi_0549	-	glycosyl transferase family protein
549	 66.21	+1	618860..619735	-	291	75674748	-	Nwi_0550	-	hypothetical protein
550	 54.11	-2	620013..620243	-	76	75674749	-	Nwi_0551	-	hypothetical protein
551	 59.14	0	620528..621895	+	455	75674750	-	Nwi_0552	-	glycosyl transferase, group 1
552	 59.81	0	621990..622733	-	247	75674751	-	Nwi_0553	-	HAD family hydrolase
553	 62.93	0	622840..624684	-	614	75674752	-	Nwi_0554	-	small GTP-binding protein
554	 60.47	0	625010..625768	-	252	75674753	-	Nwi_0555	-	transcriptional regulatory protein
555	 58.16	-1	625905..626327	+	140	75674754	-	Nwi_0556	-	response regulator receiver
556	 64.35	0	626435..627643	+	402	75674755	-	Nwi_0557	-	NnrS
557	 63.92	0	627710..627964	-	84	75674756	-	Nwi_0558	-	hypothetical protein
558	 63.61	0	628099..629112	-	337	75674757	-	Nwi_0559	-	HWE histidine kinase
559	 58.70	-1	629371..630198	+	275	75674758	-	Nwi_0560	-	cyclic nucleotide-binding
560	 60.45	0	630195..631079	+	294	75674759	-	Nwi_0561	-	hypothetical protein
561	 58.88	0	631446..631856	+	136	75674760	-	Nwi_0562	-	hypothetical protein
562	 61.87	0	632022..632417	+	131	75674761	-	Nwi_0563	-	hypothetical protein
563	 65.44	0	632436..633167	-	243	75674762	-	Nwi_0564	-	hypothetical protein
564	 66.49	+1	633258..633827	+	189	75674763	-	Nwi_0565	-	MarR family transcriptional regulator
565	 69.00	+1	633851..635137	-	428	75674764	-	Nwi_0566	-	hypothetical protein
566	 63.25	0	635408..637486	-	692	75674765	-	Nwi_0567	-	peptidase M23B
567	 60.47	0	643874..644470	+	198	75674766	-	Nwi_0568	-	hypothetical protein
568	 59.48	0	644552..644857	-	101	75674767	-	Nwi_0569	-	hypothetical protein
569	 64.69	0	644871..646391	+	506	75674768	-	Nwi_0570	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
570	 64.71	0	646661..646966	+	101	75674769	-	Nwi_0571	-	putative methylated-DNA-protein-cystein methyltransferase
571	 64.91	0	646926..647153	+	75	75674770	-	Nwi_0572	-	methylated-DNA-(protein)-cysteine S-methyltransferase
572	 67.59	+1	647374..649860	+	828	75674771	-	Nwi_0573	-	hypothetical protein
573	 65.14	0	649847..650239	-	130	75674772	-	Nwi_0574	-	response regulator receiver
574	 63.52	0	650243..651100	-	285	75674773	-	Nwi_0575	-	hypothetical protein
575	 63.33	0	651254..651913	+	219	75674774	-	Nwi_0576	-	ABC transporter, ATPase subunit
576	 66.98	+1	651933..652877	+	314	75674775	-	Nwi_0577	-	hypothetical protein
577	 65.15	0	652971..653696	+	241	75674776	-	Nwi_0578	-	hypothetical protein
578	 62.95	0	653775..654554	+	259	75674777	-	Nwi_0579	-	phospholipid/glycerol acyltransferase
579	 65.30	0	654680..655264	-	194	75674778	-	Nwi_0580	-	ChaC-like protein
580	 64.50	0	655447..656691	+	414	75674779	-	Nwi_0581	-	hypothetical protein
581	 66.03	0	656856..657791	-	311	75674780	-	Nwi_0582	-	cyclohexadienyl dehydrogenase
582	 63.66	0	657788..658885	-	365	75674781	-	Nwi_0583	-	histidinol-phosphate aminotransferase
583	 66.32	+1	658922..659776	-	284	75674782	-	Nwi_0584	-	hypothetical protein
584	 63.83	0	660098..661297	+	399	75674783	metX	Nwi_0585	-	homoserine O-acetyltransferase
585	 61.16	0	661299..661988	+	229	75674784	-	Nwi_0586	-	methionine biosynthesis MetW
586	 63.64	0	662316..662942	+	208	75674785	-	Nwi_0587	-	hypothetical protein
587	 63.71	0	663011..663787	-	258	75674786	-	Nwi_0588	-	hypothetical protein
588	 64.46	0	663965..666640	+	891	75674787	-	Nwi_0589	-	AAA ATPase
589	 64.12	0	666952..668793	+	613	75674788	-	Nwi_0590	-	sulphite reductase (NADPH) flavoprotein, alpha chain
590	 62.68	0	668804..670534	+	576	75674789	-	Nwi_0591	-	sulfite reductase subunit beta
591	 62.62	0	670769..671953	+	394	75674790	-	Nwi_0592	-	O-succinylhomoserine (thiol)-lyase
592	 63.28	0	672184..672567	-	127	75674791	-	Nwi_0593	-	hypothetical protein
593	 63.78	0	672891..674000	-	369	75674792	-	Nwi_0594	-	exodeoxyribonuclease V
594	 66.16	+1	674113..675492	-	459	75674793	-	Nwi_0595	-	helix-turn-helix, Fis-type
595	 64.67	0	675535..675885	-	116	75674794	-	Nwi_0596	-	flagellar motor switch protein
596	 63.30	0	675875..676528	-	217	75674795	fliH	Nwi_0597	-	flagellar assembly protein H
597	 62.82	0	676528..677619	-	363	75674796	fliG	Nwi_0598	-	flagellar motor switch protein G
598	 65.19	0	677626..679251	-	541	75674797	fliF	Nwi_0599	-	flagellar MS-ring protein
599	 64.49	0	679422..679697	-	91	75674798	-	Nwi_0600	-	hypothetical protein
600	 60.61	0	679882..680574	-	230	75674799	-	Nwi_0601	-	flagellar hook capping protein
601	 67.67	+1	680585..682171	-	528	75674800	-	Nwi_0602	-	flagellar hook-length control protein
602	 65.75	0	682417..683619	+	400	75674801	trmU	Nwi_0603	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
603	 62.44	0	683642..684280	+	212	75674802	-	Nwi_0604	-	UbiE/COQ5 methyltransferase
604	 70.37	+2	684455..684670	+	71	75674803	-	Nwi_0605	-	hypothetical protein
605	 63.25	0	684948..686672	+	574	75674804	-	Nwi_0606	-	TrkA-N, Sodium/hydrogen exchanger
606	 63.79	0	686812..687888	+	358	75674805	-	Nwi_0607	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
607	 61.89	0	687977..689191	+	404	75674806	-	Nwi_0608	-	acyl-CoA dehydrogenase
608	 64.94	0	689410..689640	+	76	75674807	-	Nwi_0609	-	hypothetical protein
609	 63.38	0	689695..690669	+	324	75674808	-	Nwi_0610	-	hypothetical protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.