IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3023	 57.85	-1	3297611..3297871	-	86	75677222	-	Nwi_3041	-	hypothetical protein
3024	 68.59	+1	3298326..3299363	-	345	75677223	-	Nwi_3042	-	hypothetical protein
3025	 60.77	0	3299581..3302040	-	819	75677224	-	Nwi_3043	-	TonB-dependent siderophore receptor
3026	 67.71	+1	3302144..3303100	-	318	75677225	-	Nwi_3044	-	FecR protein
3027	 62.66	0	3303193..3303741	-	182	75677226	-	Nwi_3045	-	fec I like protein
3028	 62.93	0	3308899..3309219	+	106	75677227	-	Nwi_3047	-	hypothetical protein
3029	 66.57	+1	3309230..3310306	+	358	75677228	-	Nwi_3048	-	ABC-type Fe3+-siderophore transport system permease component
3030	 65.77	0	3310303..3311085	+	260	75677229	-	Nwi_3049	-	ABC transporter, ATPase subunit
3031	 66.22	+1	3311091..3311990	+	299	75677230	-	Nwi_3050	-	ABC-type Fe3+-hydroxamate transport system periplasmic component
3032	 60.60	0	3312571..3314679	+	702	75677231	-	Nwi_3051	-	TonB-dependent receptor
3033	 59.42	0	3315007..3315558	+	183	75677232	-	Nwi_3052	-	TetR family transcriptional regulator
3034	 61.04	0	3315607..3316851	+	414	75677233	-	Nwi_3053	-	major facilitator transporter
3035	 52.24	-2	3317185..3317385	+	66	75677234	-	Nwi_3054	-	cold-shock protein, DNA-binding
3036	 67.07	+1	3317658..3320663	+	1001	75677235	-	Nwi_3055	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
3037	 59.97	0	3320846..3321457	-	203	75677236	-	Nwi_3056	-	RNA polymerase sigma factor
3038	 62.54	0	3322455..3324197	-	580	75677237	-	Nwi_3058	-	phage head-tail adaptor, putative
3039	 58.08	-1	3324314..3324907	-	197	75677238	-	Nwi_3059	-	polyhydroxyalkanoate synthesis repressor PhaR
3040	 66.75	+1	3325200..3326378	+	392	75677239	-	Nwi_3060	-	acetyl-CoA acetyltransferase
3041	 63.64	0	3326524..3327249	+	241	75677240	-	Nwi_3061	-	acetoacetyl-CoA reductase
3042	 67.24	+1	3327410..3328276	+	288	75677241	-	Nwi_3062	-	hypothetical protein
3043	 66.59	+1	3328361..3329719	-	452	75677242	-	Nwi_3063	-	major facilitator transporter
3044	 60.99	0	3330017..3330580	+	187	75677243	-	Nwi_3064	-	formylmethionine deformylase
3045	 67.41	+1	3330613..3331557	+	314	75677244	fmt	Nwi_3065	-	methionyl-tRNA formyltransferase
3046	 65.36	0	3331557..3332324	+	255	75677245	truA	Nwi_3066	-	tRNA pseudouridine synthase A
3047	 63.06	0	3332360..3332914	-	184	75677246	-	Nwi_3067	-	5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase
3048	 65.30	0	3332911..3334080	-	389	75677247	-	Nwi_3068	-	succinyl-diaminopimelate desuccinylase
3049	 66.67	+1	3334088..3334933	-	281	75677248	dapD	Nwi_3069	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
3050	 62.20	0	3335007..3335723	-	238	75677249	-	Nwi_3070	-	pyrimidine 5-nucleotidase
3051	 61.98	0	3335720..3336616	-	298	75677250	-	Nwi_3071	-	acetylglutamate kinase
3052	 68.15	+1	3336861..3337265	-	134	75677251	-	Nwi_3072	-	hypothetical protein
3053	 63.46	0	3337262..3337915	-	217	75677252	-	Nwi_3073	-	GTPase EngB
3054	 60.00	0	3338066..3339910	-	614	75677253	-	Nwi_3074	-	putative inner membrane protein translocase component YidC
3055	 63.39	0	3339983..3340318	-	111	75677254	-	Nwi_3075	-	ribonuclease P protein
3056	 67.41	+1	3340341..3340475	-	44	162139840	rpmH	Nwi_3076	-	50S ribosomal protein L34
3057	 65.52	0	3340794..3342272	+	492	75677256	-	Nwi_3077	-	Signal transduction histidine kinase
3058	 57.09	-1	3342676..3342957	-	93	75677257	-	Nwi_3078	-	hypothetical protein
3059	 58.09	-1	3343253..3343765	+	170	75677258	-	Nwi_3079	-	fec I like protein
3060	 63.52	0	3343976..3344929	+	317	75677259	-	Nwi_3080	-	FecR protein
3061	 66.86	+1	3347998..3349545	-	515	75677260	-	Nwi_3082	-	hypothetical protein
3062	 63.04	0	3349775..3350050	+	91	75677261	-	Nwi_3083	-	transcriptional regulator AbrB
3063	 62.31	0	3350037..3350426	+	129	75677262	-	Nwi_3084	-	PilT protein
3064	 62.55	0	3350487..3350729	-	80	75677263	-	Nwi_3085	-	hypothetical protein
3065	 61.88	0	3350938..3351918	-	326	75677264	-	Nwi_3086	-	helix-turn-helix, Fis-type
3066	 65.07	0	3351915..3352289	-	124	162139839	-	Nwi_3087	-	putative transposase
3067	 61.82	0	3352201..3352551	-	116	75677266	-	Nwi_3088	-	hypothetical protein
3068	 65.68	0	3352646..3353755	-	369	75677267	-	Nwi_3089	-	hypothetical protein
3069	 64.23	0	3354265..3354963	-	232	75677268	-	Nwi_3090	-	hypothetical protein
3070	 57.30	-1	3355012..3355374	-	120	75677269	-	Nwi_3091	-	hypothetical protein
3071	 61.22	0	3355504..3355797	-	97	75677270	-	Nwi_3092	-	plasmid stabilization system protein
3072	 58.04	-1	3355797..3356051	-	84	75677271	-	Nwi_3093	-	helix-turn-helix protein, CopG
3073	 60.32	0	3356164..3356478	-	104	75677272	-	Nwi_3094	-	hypothetical protein
3074	 54.65	-2	3356539..3356796	-	85	75677273	-	Nwi_3095	-	hypothetical protein
3075	 62.45	0	3357157..3357630	+	157	75677274	-	Nwi_3096	-	hypothetical protein
3076	 61.33	0	3357671..3357820	+	49	75677275	-	Nwi_3097	-	hypothetical protein
3077	 51.77	-2	3358048..3358188	-	46	75677276	-	Nwi_3098	-	hypothetical protein
3078	 59.65	0	3358275..3359714	-	479	75677277	-	Nwi_3099	-	helix-turn-helix, Fis-type
3079	 53.12	-2	3360148..3361173	-	341	75677278	lpxD	Nwi_3100	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
3080	 53.11	-2	3362436..3362708	+	90	75677279	-	Nwi_3101	-	hypothetical protein
3081	 53.07	-2	3363057..3363431	+	124	75677280	-	Nwi_3102	-	hypothetical protein
3082	 57.68	-1	3363537..3364037	-	166	75677281	-	Nwi_3103	-	hypothetical protein
3083	 57.94	-1	3364037..3364288	-	83	75677282	-	Nwi_3104	-	hypothetical protein
3084	 60.53	0	3364649..3365023	+	124	75677283	-	Nwi_3105	-	transposase IS3/IS911
3085	 59.73	0	3365020..3366000	+	326	75677284	-	Nwi_3106	-	helix-turn-helix, Fis-type
3086	 53.51	-2	3366720..3366947	-	75	75677285	-	Nwi_3107	-	hypothetical protein
3087	 57.01	-1	3367692..3368012	-	106	75677286	-	Nwi_3108	-	hypothetical protein
3088	 62.79	0	3368169..3369302	-	377	75677287	-	Nwi_3109	-	resolvase
3089	 54.17	-2	3369450..3369761	+	103	75677288	-	Nwi_3110	-	hypothetical protein
3090	 58.13	-1	3369761..3370135	+	124	75677289	-	Nwi_3111	-	XRE family transcriptional regulator
3091	 61.88	0	3370265..3371245	-	326	75677290	-	Nwi_3112	-	helix-turn-helix, Fis-type
3092	 65.33	0	3371242..3371616	-	124	75677291	-	Nwi_3113	-	transposase IS3/IS911
3093	 58.08	-1	3371680..3371970	-	96	75677292	-	Nwi_3114	-	hypothetical protein
3094	 61.90	0	3372305..3372703	+	132	75677293	-	Nwi_3115	-	transposase
3095	 63.08	0	3372718..3373191	+	157	75677294	-	Nwi_3116	-	transposase, IS4
3096	 59.76	0	3373040..3373633	-	197	75677295	-	Nwi_3117	-	hypothetical protein
3097	 67.01	+1	3373612..3373905	-	97	75677296	-	Nwi_3118	-	hypothetical protein
3098	 61.22	0	3374542..3375570	+	342	75677297	-	Nwi_3119	-	putative DNA-binding protein
3099	 58.83	0	3375563..3376264	+	233	75677298	-	Nwi_3120	-	hypothetical protein
3100	 56.13	-1	3376264..3377715	+	483	75677299	-	Nwi_3121	-	hypothetical protein
3101	 60.23	0	3377702..3378556	+	284	75677300	-	Nwi_3122	-	hypothetical protein
3102	 62.81	0	3379174..3379536	+	120	75677301	-	Nwi_3123	-	ArsR family transcriptional regulator
3103	 60.22	0	3379529..3380071	+	180	75677302	-	Nwi_3124	-	low molecular weight phosphotyrosine protein phosphatase
3104	 60.80	0	3380081..3380506	+	141	75677303	-	Nwi_3125	-	arsenate reductase
3105	 62.12	0	3380516..3381571	+	351	75677304	-	Nwi_3126	-	arsenite efflux pump ACR3
3106	 60.95	0	3381571..3382287	+	238	75677305	-	Nwi_3127	-	NADPH-dependent FMN reductase
3107	 60.26	0	3382367..3382678	-	103	75677306	-	Nwi_3128	-	hypothetical protein
3108	 61.52	0	3382905..3383312	+	135	75677307	-	Nwi_3129	-	hypothetical protein
3109	 64.21	0	3383309..3384730	+	473	75677308	-	Nwi_3130	-	secretion protein HlyD
3110	 63.27	0	3384727..3387903	+	1058	75677309	-	Nwi_3131	-	heavy metal efflux pump CzcA
3111	 62.93	0	3388211..3388585	+	124	75677310	-	Nwi_3132	-	hypothetical protein
3112	 60.24	0	3388840..3389259	-	139	75677311	-	Nwi_3133	-	MerR family transcriptional regulator
3113	 63.53	0	3389326..3391464	+	712	75677312	-	Nwi_3134	-	heavy metal translocating P-type ATPase
3114	 56.67	-1	3391517..3392596	-	359	75677313	-	Nwi_3135	-	phage integrase
3115	 59.06	0	3392593..3394275	-	560	75677314	-	Nwi_3136	-	phage integrase
3116	 59.03	0	3394776..3395561	-	261	75677315	-	Nwi_3137	-	hypothetical protein
3117	 57.06	-1	3395998..3397683	+	561	75677316	-	Nwi_3138	-	resolvase
3118	 60.70	0	3398265..3399353	-	362	75677317	-	Nwi_3139	-	metal-dependent phosphohydrolase
3119	 59.02	0	3399573..3400043	+	156	75677318	-	Nwi_3140	-	hypothetical protein
3120	 60.63	0	3400281..3400595	-	104	75677319	-	Nwi_3141	-	hypothetical protein
3121	 57.58	-1	3400611..3400874	-	87	75677320	-	Nwi_3142	-	hypothetical protein
3122	 61.80	0	3400955..3401221	+	88	75677321	rpsT	Nwi_3143	-	30S ribosomal protein S20
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.