IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
256	 58.60	-1	287999..289213	+	404	75674455	-	Nwi_0257	-	hypothetical protein
257	 57.73	-1	289260..290468	-	402	75674456	-	Nwi_0258	-	hypothetical protein
258	 59.30	0	290585..291466	-	293	75674457	-	Nwi_0259	-	hypothetical protein
259	 61.30	0	291472..292905	-	477	75674458	-	Nwi_0260	-	hypothetical protein
260	 62.87	0	292902..293717	-	271	75674459	-	Nwi_0261	-	hypothetical protein
261	 64.79	0	293714..294514	-	266	75674460	-	Nwi_0262	-	hypothetical protein
262	 67.20	+1	294625..295182	+	185	75674461	-	Nwi_0263	-	hypothetical protein
263	 63.28	0	295179..296537	+	452	75674462	-	Nwi_0264	-	hypothetical protein
264	 61.85	0	296516..297718	+	400	75674463	-	Nwi_0265	-	XRE family transcriptional regulator
265	 57.93	-1	297693..298310	+	205	75674464	-	Nwi_0266	-	hypothetical protein
266	 57.50	-1	298560..301178	-	872	75674465	-	Nwi_0267	-	hypothetical protein
267	 56.48	-1	301186..302520	-	444	75674466	-	Nwi_0268	-	restriction endonuclease S subunits
268	 58.72	-1	302517..304076	-	519	75674467	-	Nwi_0269	-	N-6 DNA methylase
269	 59.25	0	304063..306435	-	790	75674468	-	Nwi_0270	-	DEAD/DEAH box helicase
270	 58.81	-1	306432..306851	-	139	75674469	-	Nwi_0271	-	excisionase/Xis, DNA-binding
271	 57.80	-1	307106..308380	-	424	75674470	-	Nwi_0272	-	phage integrase
272	 54.84	-2	308686..308964	-	92	75674471	-	Nwi_0273	-	hypothetical protein
273	 63.41	0	309187..309432	+	81	75674472	-	Nwi_0274	-	hypothetical protein
274	 63.43	0	309446..310525	+	359	75674473	-	Nwi_0275	-	phage integrase
275	 66.67	+1	310827..311024	-	65	75674474	-	Nwi_0276	-	zinc-binding protein
276	 62.82	0	310999..311622	-	207	75674475	maf	Nwi_0277	-	Maf-like protein
277	 65.16	0	311913..313109	+	398	75674476	-	Nwi_0278	-	hypothetical protein
278	 66.75	+1	313329..314516	+	395	75674477	-	Nwi_0279	-	thiolase
279	 58.40	-1	314644..315042	-	132	75674478	-	Nwi_0280	-	hypothetical protein
280	 66.54	+1	315223..316782	+	519	75674479	-	Nwi_0281	-	glycerol kinase
281	 66.67	+1	316829..317254	-	141	75674480	-	Nwi_0282	-	transcriptional regulator
282	 64.70	0	317257..321129	-	1290	75674481	metH	Nwi_0283	-	B12-dependent methionine synthase
283	 63.95	0	321190..322221	-	343	75674482	-	Nwi_0284	-	5,10-methylenetetrahydrofolate reductase
284	 62.83	0	322432..323292	-	286	75674483	-	Nwi_0285	-	prephenate dehydratase
285	 67.06	+1	323304..324068	-	254	75674484	-	Nwi_0286	-	3-deoxy-manno-octulosonate cytidylyltransferase
286	 61.29	0	324262..324819	+	185	75674485	-	Nwi_0287	-	cytochrome c, class I
287	 60.71	0	325344..327239	+	631	75674486	-	Nwi_0288	-	extracellular solute-binding protein
288	 63.61	0	327254..329152	+	632	75674487	-	Nwi_0289	-	extracellular solute-binding protein
289	 58.92	0	329155..330264	+	369	75674488	-	Nwi_0290	-	binding-protein dependent transport system inner membrane protein
290	 61.04	0	330270..331442	+	390	75674489	-	Nwi_0291	-	binding-protein dependent transport system inner membrane protein
291	 64.96	0	331452..333089	+	545	75674490	-	Nwi_0292	-	ABC transporter, ATPase subunit
292	 66.78	+1	333090..333935	-	281	75674491	-	Nwi_0293	-	cell wall-associated hydrolase
293	 65.59	0	333928..335316	-	462	75674492	-	Nwi_0294	-	peptidase M17, leucyl aminopeptidase
294	 64.26	0	335445..336317	+	290	75674493	-	Nwi_0295	-	TPR repeat-containing protein
295	 61.15	0	336475..337452	-	325	75674494	-	Nwi_0296	-	type II secretion system protein
296	 64.10	0	337465..338439	-	324	75674495	-	Nwi_0297	-	type II secretion system protein
297	 64.01	0	338452..339918	-	488	75674496	-	Nwi_0298	-	type II secretion system protein E
298	 64.22	0	340175..341440	-	421	75674497	-	Nwi_0299	-	pilus assembly protein cpaE
299	 65.72	0	341437..342177	-	246	75674498	-	Nwi_0300	-	pilus assembly protein CpaD
300	 64.24	0	342198..343679	-	493	75674499	-	Nwi_0301	-	type II and III secretion system protein
301	 64.37	0	343695..344522	-	275	75674500	-	Nwi_0302	-	Flp pilus assembly CpaB
302	 65.71	0	344602..345126	-	174	75674501	-	Nwi_0303	-	peptidase A24A, prepilin type IV
303	 54.76	-2	345462..345629	-	55	75674502	-	Nwi_0304	-	Flp/Fap pilin component
304	 62.40	0	346034..346525	+	163	75674503	-	Nwi_0305	-	hypothetical protein
305	 59.54	0	346707..347267	+	186	75674504	-	Nwi_0306	-	Flp pilus assembly protein TadG
306	 59.26	0	347295..348023	+	242	75674505	-	Nwi_0307	-	Flp pilus assembly protein TadG
307	 58.68	-1	348165..349115	-	316	75674506	-	Nwi_0308	-	integrase, catalytic region
308	 60.66	0	349248..349613	+	121	75674507	-	Nwi_0309	-	ISBm1, transposase orfA
309	 60.03	0	349385..350017	+	210	75674508	-	Nwi_0310	-	transposase, IS4
310	 56.52	-1	350232..350438	-	68	75674509	-	Nwi_0311	-	cold-shock protein, DNA-binding
311	 62.41	0	350696..350977	-	93	75674510	-	Nwi_0312	-	translation initiation factor IF-1
312	 58.02	-1	351118..351360	+	80	75674511	-	Nwi_0313	-	hypothetical protein
313	 64.71	0	351424..352854	-	476	75674512	-	Nwi_0314	-	DEAD/DEAH box helicase
314	 66.79	+1	353099..353893	-	264	75674513	-	Nwi_0315	-	pseudouridine synthase
315	 66.03	0	353924..354871	+	315	75674514	-	Nwi_0316	-	cell division transporter substrate-binding protein FtsY
316	 61.36	0	354982..355584	+	200	162139851	-	Nwi_0317	-	intracellular septation protein A
317	 68.52	+1	355631..356224	-	197	75674516	-	Nwi_0318	-	periplasmic protein thiol-disulfide oxidoreductase DsbE
318	 63.89	0	356221..356400	-	59	75674517	-	Nwi_0319	-	Heme exporter protein D (CcmD)
319	 65.44	0	356406..357137	-	243	75674518	-	Nwi_0320	-	cytochrome c-type biogenesis protein CcmC
320	 69.66	+1	357233..357901	-	222	75674519	-	Nwi_0321	-	cytochrome c-type biogenesis protein CcmB
321	 68.66	+1	357975..358577	-	200	75674520	-	Nwi_0322	-	cytochrome c biogenesis protein CcmA
322	 62.66	0	358803..361520	+	905	75674521	-	Nwi_0323	-	aconitate hydratase
323	 60.93	0	361704..362540	+	278	75674522	-	Nwi_0324	-	hypothetical protein
324	 59.68	0	362968..363339	+	123	75674523	-	Nwi_0325	-	hypothetical protein
325	 61.05	0	363439..364506	-	355	75674524	-	Nwi_0326	-	glycosyl transferase, group 1
326	 62.30	0	364797..366560	+	587	75674525	-	Nwi_0327	-	ABC transporter, transmembrane region
327	 63.44	0	366628..368829	+	733	75674526	-	Nwi_0328	-	amylo-alpha-1,6-glucosidase
328	 64.59	0	369511..371535	-	674	75674527	-	Nwi_0329	-	carbohydrate-selective porin OprB
329	 69.23	+1	371764..372582	-	272	75674528	-	Nwi_0330	-	creatininase
330	 59.81	0	372722..373756	+	344	75674529	-	Nwi_0331	-	perplasmic binding protein of ABC transporter
331	 66.92	+1	373772..374575	+	267	75674530	-	Nwi_0332	-	ABC transporter, ATPase subunit
332	 65.95	0	374572..375408	+	278	75674531	-	Nwi_0333	-	binding-protein dependent transport system inner membrane protein
333	 62.75	0	375405..376145	+	246	75674532	-	Nwi_0334	-	hypothetical protein
334	 62.31	0	376215..376925	-	236	75674533	radC	Nwi_0335	-	DNA repair protein RadC
335	 62.87	0	377225..378040	-	271	75674534	-	Nwi_0336	-	peptidase M24A
336	 64.38	0	378252..380045	+	597	75674535	-	Nwi_0337	-	potassium/proton antiporter
337	 65.17	0	380066..380731	-	221	75674536	-	Nwi_0338	-	molybdate ABC transporter, ATP-binding protein
338	 64.17	0	380734..381495	-	253	75674537	modB	Nwi_0339	-	molybdate ABC transporter permease protein
339	 62.79	0	381599..382423	-	274	75674538	-	Nwi_0340	-	molybdenum ABC transporter, periplasmic binding protein
340	 68.00	+1	382614..383666	-	350	75674539	mepA	Nwi_0341	-	penicillin-insensitive murein endopeptidase
341	 65.78	0	383703..384041	-	112	75674540	-	Nwi_0342	-	hypothetical protein
342	 62.58	0	384138..385949	-	603	75674541	-	Nwi_0343	-	GTP-binding protein LepA
343	 64.24	0	386045..386374	-	109	75674542	-	Nwi_0344	-	phosphoryl transfer system, HPr
344	 64.18	0	386371..386772	-	133	75674543	-	Nwi_0345	-	PTS system fructose subfamily IIA component
345	 65.88	0	386925..387434	-	169	75674544	-	Nwi_0346	-	hypothetical protein
346	 64.27	0	387431..389266	-	611	75674545	-	Nwi_0347	-	Signal transduction histidine kinase
347	 60.11	0	389429..390130	-	233	75674546	-	Nwi_0348	-	transcriptional regulatory protein
348	 62.47	0	390352..391089	+	245	75674547	-	Nwi_0349	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
349	 62.28	0	391235..392851	+	538	75674548	-	Nwi_0350	-	phosphoenolpyruvate carboxykinase
350	 66.11	+1	392871..393761	+	296	75674549	-	Nwi_0351	-	beta-lactamase
351	 65.56	0	393742..394737	-	331	75674550	-	Nwi_0352	-	arginase
352	 65.03	0	394743..397484	-	913	75674551	ligD	Nwi_0353	-	ATP-dependent DNA ligase
353	 61.29	0	397534..397719	-	61	75674552	-	Nwi_0354	-	hypothetical protein
354	 60.47	0	397732..398715	-	327	75674553	-	Nwi_0355	-	hypothetical protein
355	 67.32	+1	398861..399472	-	203	75674554	-	Nwi_0356	-	lysine exporter protein LysE/YggA
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.