IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2920	 56.08	-1	3174778..3175032	+	84	75677119	-	Nwi_2938	-	hypothetical protein
2921	 61.16	0	3175004..3175330	+	108	75677120	-	Nwi_2939	-	heat shock protein Hsp20
2922	 57.00	-1	3175421..3175927	+	168	75677121	-	Nwi_2940	-	heat shock protein Hsp20
2923	 59.73	0	3176503..3177483	-	326	75677122	-	Nwi_2941	-	helix-turn-helix, Fis-type
2924	 60.53	0	3177480..3177854	-	124	75677123	-	Nwi_2942	-	transposase IS3/IS911
2925	 56.93	-1	3178224..3178634	+	136	75677124	-	Nwi_2943	-	hypothetical protein
2926	 59.26	0	3178639..3179151	+	170	75677125	-	Nwi_2944	-	putative bacteriophage-related protein
2927	 59.59	0	3179148..3180800	+	550	75677126	-	Nwi_2945	-	resolvase
2928	 54.66	-2	3181129..3181536	-	135	75677127	-	Nwi_2946	-	response regulator receiver
2929	 62.05	0	3181663..3182550	+	295	75677128	-	Nwi_2947	-	N-formylglutamate amidohydrolase
2930	 60.68	0	3182812..3183162	+	116	75677129	-	Nwi_2948	-	transposase
2931	 59.35	0	3183114..3183755	+	213	75677130	-	Nwi_2949	-	ISRm2011-2 transposase protein
2932	 63.49	0	3184287..3185072	+	261	75677131	-	Nwi_2950	-	histidinol-phosphate phosphatase, putative, inositol monophosphatase
2933	 64.83	0	3185229..3186263	-	344	75677132	-	Nwi_2951	-	lysophospholipase
2934	 61.04	0	3186384..3186845	+	153	75677133	-	Nwi_2952	-	heat shock protein Hsp20
2935	 64.52	0	3187299..3192089	+	1596	75677134	-	Nwi_2953	-	glutamine amidotransferase, class-II
2936	 63.64	0	3192277..3193731	+	484	75677135	gltD	Nwi_2954	-	glutamate synthase subunit beta
2937	 60.45	0	3194169..3194522	+	117	75677136	-	Nwi_2955	-	hypothetical protein
2938	 65.55	0	3194653..3196269	-	538	75677137	-	Nwi_2956	-	hypothetical protein
2939	 66.60	+1	3196435..3197847	-	470	75677138	-	Nwi_2957	-	lytic murein transglycosylase
2940	 62.33	0	3198386..3199261	+	291	75677139	-	Nwi_2958	-	UTP--glucose-1-phosphate uridylyltransferase
2941	 65.15	0	3199264..3199527	+	87	75677140	-	Nwi_2959	-	hypothetical protein
2942	 60.63	0	3199706..3200119	+	137	75677141	-	Nwi_2960	-	methionine sulfoxide reductase B
2943	 61.81	0	3200351..3200638	+	95	75677142	-	Nwi_2961	-	hypothetical protein
2944	 64.09	0	3200730..3201272	-	180	75677143	-	Nwi_2962	-	hypothetical protein
2945	 61.57	0	3201543..3201758	+	71	75677144	-	Nwi_2963	-	hypothetical protein
2946	 67.10	+1	3202053..3203675	-	540	75677145	-	Nwi_2964	-	hypothetical protein
2947	 63.73	0	3203727..3205019	-	430	75677146	-	Nwi_2965	-	adenylosuccinate synthetase
2948	 57.36	-1	3205016..3205273	-	85	75677147	-	Nwi_2966	-	hypothetical protein
2949	 67.05	+1	3205430..3206983	+	517	75677148	-	Nwi_2967	-	peptidase S10, serine carboxypeptidase
2950	 63.46	0	3207073..3208662	-	529	75677149	-	Nwi_2968	-	D-3-phosphoglycerate dehydrogenase
2951	 63.85	0	3208869..3210041	-	390	75677150	-	Nwi_2969	-	phosphoserine aminotransferase
2952	 57.88	-1	3210235..3211065	-	276	75677151	-	Nwi_2970	-	hypothetical protein
2953	 62.34	0	3211269..3212123	-	284	75677152	-	Nwi_2971	-	hypothetical protein
2954	 60.84	0	3212266..3213534	-	422	75677153	-	Nwi_2972	-	major facilitator transporter
2955	 61.84	0	3213800..3215146	-	448	75677154	-	Nwi_2973	-	phosphoglucosamine mutase
2956	 59.09	0	3215549..3215746	-	65	75677155	-	Nwi_2974	-	hypothetical protein
2957	 64.33	0	3216030..3217910	-	626	75677156	-	Nwi_2975	-	ferrous iron transport protein B
2958	 63.56	0	3217907..3218131	-	74	75677157	-	Nwi_2976	-	hypothetical protein
2959	 67.14	+1	3218479..3219318	-	279	75677158	-	Nwi_2977	-	shikimate/quinate 5-dehydrogenase
2960	 64.99	0	3219524..3221614	-	696	75677159	-	Nwi_2978	-	elongation factor G
2961	 66.85	+1	3221926..3222474	-	182	75677160	-	Nwi_2979	-	hypothetical protein
2962	 61.35	0	3222711..3223913	-	400	75677161	-	Nwi_2980	-	aspartate aminotransferase
2963	 59.91	0	3224352..3225002	+	216	75677162	-	Nwi_2981	-	glutathione S-transferase
2964	 64.93	0	3225572..3226720	+	382	75677163	-	Nwi_2982	-	hypothetical protein
2965	 66.13	+1	3226762..3227316	-	184	75677164	-	Nwi_2983	-	hypothetical protein
2966	 60.87	0	3227742..3227948	-	68	75677165	-	Nwi_2984	-	hypothetical protein
2967	 63.61	0	3227976..3229283	-	435	75677166	-	Nwi_2985	-	isocitrate lyase
2968	 65.08	0	3229453..3230904	+	483	75677167	-	Nwi_2986	-	XRE family transcriptional regulator
2969	 58.55	-1	3230988..3231554	-	188	75677168	-	Nwi_2987	-	cytochrome c, class I
2970	 59.62	0	3231541..3232818	-	425	75677169	-	Nwi_2988	-	oxidoreductase, molybdopterin binding
2971	 58.53	-1	3233183..3233686	+	167	75677170	-	Nwi_2989	-	hypothetical protein
2972	 64.70	0	3233767..3235341	-	524	75677171	glpD	Nwi_2990	-	glycerol-3-phosphate dehydrogenase
2973	 58.84	0	3235503..3235847	-	114	75677172	-	Nwi_2991	-	hypothetical protein
2974	 63.78	0	3236070..3236519	-	149	75677173	-	Nwi_2992	-	thioesterase superfamily protein
2975	 65.09	0	3236569..3238659	-	696	75677174	-	Nwi_2993	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
2976	 65.89	0	3238667..3239950	-	427	75677175	-	Nwi_2994	-	acetyl-CoA acetyltransferase
2977	 64.55	0	3239950..3242217	-	755	75677176	fadE	Nwi_2995	-	acyl-CoA dehydrogenase
2978	 63.14	0	3242656..3244752	+	698	75677177	-	Nwi_2996	-	methyl-accepting chemotaxis protein
2979	 60.65	0	3244955..3245170	+	71	75677178	-	Nwi_2997	-	CsbD-like protein
2980	 59.51	0	3245308..3246075	+	255	75677179	-	Nwi_2998	-	rhodanese-like sulfurtransferase
2981	 62.91	0	3246068..3246280	+	70	75677180	-	Nwi_2999	-	hypothetical protein
2982	 68.26	+1	3246425..3247741	+	438	75677181	-	Nwi_3000	-	hypothetical protein
2983	 64.44	0	3247773..3248759	-	328	75677182	-	Nwi_3001	-	2-nitropropane dioxygenase, NPD
2984	 61.66	0	3248790..3249728	+	312	75677183	-	Nwi_3002	-	hypothetical protein
2985	 56.60	-1	3249908..3250195	+	95	75677184	-	Nwi_3003	-	hypothetical protein
2986	 64.73	0	3250656..3253904	+	1082	75677185	-	Nwi_3004	-	TPR repeat-containing protein
2987	 55.68	-1	3253873..3254136	-	87	75677186	-	Nwi_3005	-	hypothetical protein
2988	 59.95	0	3254250..3255068	+	272	75677187	-	Nwi_3006	-	formate/nitrite transporter
2989	 60.68	0	3256019..3256369	+	116	75677188	-	Nwi_3007	-	transposase
2990	 59.35	0	3256321..3256962	+	213	75677189	-	Nwi_3008	-	ISRm2011-2 transposase protein
2991	 58.92	0	3257416..3257841	-	141	75677190	-	Nwi_3009	-	transcriptional regulator, PadR-like
2992	 58.42	-1	3259073..3259363	-	96	75677191	-	Nwi_3010	-	hypothetical protein
2993	 64.34	0	3259751..3260008	-	85	75677192	-	Nwi_3011	-	hypothetical protein
2994	 62.14	0	3260152..3260460	-	102	75677193	-	Nwi_3012	-	putative serinethreonine protein phosphatase
2995	 64.50	0	3260522..3260890	-	122	75677194	-	Nwi_3013	-	transposase, IS4
2996	 61.90	0	3260905..3261303	-	132	75677195	-	Nwi_3014	-	transposase
2997	 61.86	0	3261324..3261677	-	117	75677196	-	Nwi_3015	-	putative serine/threonine protein phosphatase
2998	 65.63	0	3261757..3263301	-	514	75677197	-	Nwi_3016	-	hypothetical protein
2999	 60.99	0	3263528..3264091	+	187	75677198	-	Nwi_3017	-	ErfK/YbiS/YcfS/YnhG
3000	 62.25	0	3264190..3265413	-	407	75677199	-	Nwi_3018	-	Acyl-CoA dehydrogenase
3001	 64.81	0	3265668..3267176	+	502	75677200	-	Nwi_3019	-	YcjX-like protein
3002	 69.05	+1	3267173..3268219	+	348	75677201	-	Nwi_3020	-	hypothetical protein
3003	 62.44	0	3268446..3270194	-	582	75677202	-	Nwi_3021	-	hypothetical protein
3004	 62.68	0	3270578..3271780	+	400	75677203	-	Nwi_3022	-	oxidoreductase, molybdopterin binding
3005	 60.06	0	3271792..3272124	+	110	75677204	-	Nwi_3023	-	cytochrome c oxidoreductase subunit B
3006	 61.81	0	3272481..3273962	-	493	75677205	-	Nwi_3024	-	glycosyl transferase family protein
3007	 63.82	0	3274143..3275936	-	597	75677206	-	Nwi_3025	-	glycoside hydrolase 15-related
3008	 64.94	0	3275933..3276742	-	269	75677207	-	Nwi_3026	-	trehalose-phosphatase
3009	 63.07	0	3276739..3278184	-	481	75677208	-	Nwi_3027	-	major facilitator transporter
3010	 61.53	0	3278625..3279266	+	213	75677209	-	Nwi_3028	-	OmpA/MotB
3011	 66.41	+1	3279481..3281064	+	527	75677210	-	Nwi_3029	-	peptidase C14
3012	 66.67	+1	3281173..3282093	+	306	75677211	-	Nwi_3030	-	secretion protein HlyD
3013	 64.75	0	3282093..3285221	+	1042	75677212	-	Nwi_3031	-	acriflavin resistance protein
3014	 63.56	0	3285439..3286113	-	224	75677213	-	Nwi_3032	-	Crp family transcriptional regulator
3015	 66.10	+1	3286399..3288348	+	649	75677214	-	Nwi_3033	-	hypothetical protein
3016	 62.93	0	3288524..3289138	-	204	75677215	-	Nwi_3034	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
3017	 63.98	0	3289280..3291028	-	582	75677216	-	Nwi_3035	-	hypothetical protein
3018	 63.96	0	3291540..3292427	+	295	75677217	-	Nwi_3036	-	peptidase C14, caspase catalytic subunit p20
3019	 64.50	0	3292619..3292987	-	122	75677218	-	Nwi_3037	-	transposase, IS4
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.