IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2845	 56.80	-1	3095047..3097812	+	921	75677044	-	Nwi_2863	-	hypothetical protein
2846	 60.53	0	3097875..3098249	+	124	75677045	-	Nwi_2864	-	transposase IS3/IS911
2847	 59.73	0	3098246..3099226	+	326	75677046	-	Nwi_2865	-	helix-turn-helix, Fis-type
2848	 61.88	0	3099378..3100358	-	326	75677047	-	Nwi_2866	-	helix-turn-helix, Fis-type
2849	 65.07	0	3100355..3100729	-	124	75677048	-	Nwi_2867	-	transposase IS3/IS911
2850	 62.18	0	3101193..3102485	-	430	75677049	-	Nwi_2868	-	hypothetical protein
2851	 63.74	0	3102475..3102816	-	113	75677050	-	Nwi_2869	-	hypothetical protein
2852	 59.34	0	3103163..3103435	+	90	75677051	-	Nwi_2870	-	hypothetical protein
2853	 62.57	0	3103444..3104322	+	292	75677052	-	Nwi_2871	-	hypothetical protein
2854	 61.90	0	3104297..3104968	+	223	75677053	-	Nwi_2872	-	hypothetical protein
2855	 61.16	0	3104952..3105659	+	235	75677054	-	Nwi_2873	-	hypothetical protein
2856	 62.98	0	3105391..3106449	+	352	75677055	-	Nwi_2874	-	hypothetical protein
2857	 57.19	-1	3106724..3107272	+	182	75677056	-	Nwi_2875	-	hypothetical protein
2858	 51.89	-2	3107347..3108009	-	220	75677057	-	Nwi_2876	-	hypothetical protein
2859	 55.52	-1	3108006..3108965	-	319	75677058	-	Nwi_2877	-	hypothetical protein
2860	 59.34	0	3109234..3109506	+	90	75677059	-	Nwi_2878	-	hypothetical protein
2861	 59.73	0	3109684..3110664	-	326	75677060	-	Nwi_2879	-	helix-turn-helix, Fis-type
2862	 60.53	0	3110661..3111035	-	124	75677061	-	Nwi_2880	-	transposase IS3/IS911
2863	 61.27	0	3111299..3113764	-	821	75677062	-	Nwi_2881	-	TonB-dependent siderophore receptor
2864	 64.88	0	3113977..3114981	-	334	75677063	-	Nwi_2882	-	FecR protein
2865	 63.78	0	3115272..3115790	-	172	75677064	-	Nwi_2883	-	fec I like protein
2866	 58.46	-1	3116136..3116744	-	202	75677065	-	Nwi_2884	-	hypothetical protein
2867	 63.91	0	3116844..3117314	-	156	75677066	-	Nwi_2885	-	MarR family transcriptional regulator
2868	 61.30	0	3117599..3118045	+	148	75677067	-	Nwi_2886	-	glyoxalase/bleomycin resistance protein/dioxygenase
2869	 60.80	0	3118159..3119334	-	391	75677068	-	Nwi_2887	-	ribonucleotide-diphosphate reductase subunit beta
2870	 64.57	0	3119427..3122336	-	969	75677069	-	Nwi_2888	-	ribonucleotide-diphosphate reductase subunit alpha
2871	 60.20	0	3122721..3123539	+	272	75677070	-	Nwi_2889	-	hypothetical protein
2872	 64.85	0	3123918..3126233	+	771	75677071	-	Nwi_2890	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2873	 62.94	0	3126624..3127214	+	196	75677072	-	Nwi_2891	-	ErfK/YbiS/YcfS/YnhG
2874	 60.21	0	3127270..3128307	+	345	75677073	-	Nwi_2892	-	extracellular solute-binding protein
2875	 66.07	+1	3128362..3129033	-	223	75677074	-	Nwi_2893	-	hypothetical protein
2876	 59.24	0	3129380..3129850	+	156	75677075	-	Nwi_2894	-	hypothetical protein
2877	 63.88	0	3130143..3131183	+	346	75677076	-	Nwi_2895	-	beta-lactamase-like protein
2878	 62.27	0	3131312..3132493	-	393	75677077	-	Nwi_2896	-	diguanylate cyclase
2879	 58.16	-1	3133137..3133559	-	140	75677078	-	Nwi_2897	-	hypothetical protein
2880	 57.64	-1	3133769..3134167	-	132	75677079	-	Nwi_2898	-	hypothetical protein
2881	 58.13	-1	3134284..3135267	+	327	75677080	-	Nwi_2899	-	integrase, catalytic region
2882	 61.90	0	3135254..3135694	+	146	75677081	-	Nwi_2900	-	hypothetical protein
2883	 66.94	+1	3136007..3136378	+	123	75677082	-	Nwi_2901	-	hypothetical protein
2884	 63.17	0	3136488..3138863	+	791	75677083	-	Nwi_2902	-	TonB-dependent receptor
2885	 62.70	0	3138881..3140089	+	402	75677084	-	Nwi_2903	-	BNR repeat-containing glycosyl hydrolase
2886	 59.85	0	3140086..3140613	+	175	75677085	-	Nwi_2904	-	signal peptide protein
2887	 61.69	0	3140894..3142039	-	381	75677086	-	Nwi_2905	-	high-affinity nickel-transporter
2888	 56.12	-1	3142064..3142708	-	214	75677087	-	Nwi_2906	-	hypothetical protein
2889	 55.83	-1	3142941..3143309	+	122	75677088	-	Nwi_2907	-	ArsR family transcriptional regulator
2890	 64.10	0	3143373..3143567	-	64	75677089	-	Nwi_2908	-	hypothetical protein
2891	 61.72	0	3143796..3144179	+	127	75677090	-	Nwi_2909	-	hypothetical protein
2892	 64.82	0	3144439..3146007	-	522	75677091	-	Nwi_2910	-	RND efflux system, outer membrane lipoprotein, NodT
2893	 60.70	0	3146048..3149200	-	1050	75677092	-	Nwi_2911	-	heavy metal efflux pump CzcA
2894	 62.45	0	3149219..3150475	-	418	75677093	-	Nwi_2912	-	secretion protein HlyD
2895	 60.89	0	3150803..3151477	+	224	75677094	-	Nwi_2913	-	two component transcriptional regulator
2896	 61.71	0	3151767..3153137	+	456	75677095	-	Nwi_2914	-	Signal transduction histidine kinase
2897	 61.08	0	3153455..3153919	+	154	75677096	-	Nwi_2915	-	hypothetical protein
2898	 65.70	0	3154666..3155184	+	172	75677097	-	Nwi_2916	-	hypothetical protein
2899	 58.59	-1	3155333..3156298	+	321	75677098	-	Nwi_2917	-	integrase, catalytic region
2900	 58.57	-1	3156459..3157409	+	316	75677099	-	Nwi_2918	-	integrase, catalytic region
2901	 60.66	0	3157406..3158038	-	210	75677100	-	Nwi_2919	-	transposase, IS4
2902	 60.93	0	3157810..3158175	-	121	75677101	-	Nwi_2920	-	ISBm1, transposase orfA
2903	 60.39	0	3158559..3159275	+	238	75677102	-	Nwi_2921	-	ISRm2011-2 transposase protein
2904	 60.66	0	3159369..3159734	+	121	75677103	-	Nwi_2922	-	ISBm1, transposase orfA
2905	 64.23	0	3160186..3160554	-	122	75677104	-	Nwi_2923	-	transposase, IS4
2906	 61.84	0	3161039..3161266	-	75	75677105	-	Nwi_2924	-	IS4 family transposase
2907	 61.87	0	3161421..3161795	-	124	75677106	-	Nwi_2925	-	transposase
2908	 54.49	-2	3162244..3162555	+	103	75677107	-	Nwi_2926	-	XRE family transcriptional regulator
2909	 58.47	-1	3162872..3163786	-	304	75677108	-	Nwi_2927	-	CbbX like protein
2910	 56.34	-1	3163947..3164372	-	141	75677109	-	Nwi_2928	-	ribulose bisphosphate carboxylase, small chain
2911	 62.52	0	3164384..3165853	-	489	75677110	rbcL	Nwi_2929	-	ribulose bisophosphate carboxylase
2912	 62.72	0	3166356..3167318	+	320	75677111	-	Nwi_2930	-	LysR family transcriptional regulator
2913	 56.94	-1	3167370..3167729	+	119	75677112	-	Nwi_2931	-	nitrogen regulatory protein P-II
2914	 62.38	0	3167821..3169338	+	505	75677113	-	Nwi_2932	-	carboxysome shell polypeptide, CsoS3
2915	 60.49	0	3170160..3170693	+	177	75677114	-	Nwi_2933	-	ParB-like nuclease
2916	 58.93	0	3170987..3172111	+	374	75677115	-	Nwi_2934	-	trypsin-like serine protease
2917	 60.85	0	3173112..3173627	-	171	75677116	-	Nwi_2935	-	hypothetical protein
2918	 56.95	-1	3173713..3174165	-	150	75677117	-	Nwi_2936	-	heat shock protein Hsp20
2919	 58.44	-1	3174408..3174650	-	80	75677118	-	Nwi_2937	-	hypothetical protein
2920	 56.08	-1	3174778..3175032	+	84	75677119	-	Nwi_2938	-	hypothetical protein
2921	 61.16	0	3175004..3175330	+	108	75677120	-	Nwi_2939	-	heat shock protein Hsp20
2922	 57.00	-1	3175421..3175927	+	168	75677121	-	Nwi_2940	-	heat shock protein Hsp20
2923	 59.73	0	3176503..3177483	-	326	75677122	-	Nwi_2941	-	helix-turn-helix, Fis-type
2924	 60.53	0	3177480..3177854	-	124	75677123	-	Nwi_2942	-	transposase IS3/IS911
2925	 56.93	-1	3178224..3178634	+	136	75677124	-	Nwi_2943	-	hypothetical protein
2926	 59.26	0	3178639..3179151	+	170	75677125	-	Nwi_2944	-	putative bacteriophage-related protein
2927	 59.59	0	3179148..3180800	+	550	75677126	-	Nwi_2945	-	resolvase
2928	 54.66	-2	3181129..3181536	-	135	75677127	-	Nwi_2946	-	response regulator receiver
2929	 62.05	0	3181663..3182550	+	295	75677128	-	Nwi_2947	-	N-formylglutamate amidohydrolase
2930	 60.68	0	3182812..3183162	+	116	75677129	-	Nwi_2948	-	transposase
2931	 59.35	0	3183114..3183755	+	213	75677130	-	Nwi_2949	-	ISRm2011-2 transposase protein
2932	 63.49	0	3184287..3185072	+	261	75677131	-	Nwi_2950	-	histidinol-phosphate phosphatase, putative, inositol monophosphatase
2933	 64.83	0	3185229..3186263	-	344	75677132	-	Nwi_2951	-	lysophospholipase
2934	 61.04	0	3186384..3186845	+	153	75677133	-	Nwi_2952	-	heat shock protein Hsp20
2935	 64.52	0	3187299..3192089	+	1596	75677134	-	Nwi_2953	-	glutamine amidotransferase, class-II
2936	 63.64	0	3192277..3193731	+	484	75677135	gltD	Nwi_2954	-	glutamate synthase subunit beta
2937	 60.45	0	3194169..3194522	+	117	75677136	-	Nwi_2955	-	hypothetical protein
2938	 65.55	0	3194653..3196269	-	538	75677137	-	Nwi_2956	-	hypothetical protein
2939	 66.60	+1	3196435..3197847	-	470	75677138	-	Nwi_2957	-	lytic murein transglycosylase
2940	 62.33	0	3198386..3199261	+	291	75677139	-	Nwi_2958	-	UTP--glucose-1-phosphate uridylyltransferase
2941	 65.15	0	3199264..3199527	+	87	75677140	-	Nwi_2959	-	hypothetical protein
2942	 60.63	0	3199706..3200119	+	137	75677141	-	Nwi_2960	-	methionine sulfoxide reductase B
2943	 61.81	0	3200351..3200638	+	95	75677142	-	Nwi_2961	-	hypothetical protein
2944	 64.09	0	3200730..3201272	-	180	75677143	-	Nwi_2962	-	hypothetical protein
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.