IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2768	 62.73	0	3023053..3023433	+	126	75676967	rplS	Nwi_2783	-	50S ribosomal protein L19
2769	 58.43	-1	3023540..3023794	+	84	75676968	-	Nwi_2784	-	hypothetical protein
2770	 64.82	0	3023869..3025275	+	468	75676969	-	Nwi_2785	-	isopropylmalate isomerase large subunit
2771	 66.50	+1	3025506..3026111	+	201	75676970	-	Nwi_2786	-	hypothetical protein
2772	 63.07	0	3026228..3026533	-	101	75676971	-	Nwi_2787	-	hypothetical protein
2773	 61.05	0	3026779..3027063	-	94	75676972	-	Nwi_2788	-	hypothetical protein
2774	 64.90	0	3027261..3027599	-	112	75676973	-	Nwi_2789	-	hypothetical protein
2775	 60.70	0	3027726..3028127	+	133	75676974	-	Nwi_2790	-	hypothetical protein
2776	 58.91	0	3028211..3028816	+	201	75676975	leuD	Nwi_2791	-	isopropylmalate isomerase small subunit
2777	 61.90	0	3028966..3029616	+	216	75676976	-	Nwi_2792	-	carbonic anhydrase
2778	 60.39	0	3029712..3030746	-	344	75676977	-	Nwi_2793	-	aspartate-semialdehyde dehydrogenase
2779	 65.14	0	3031143..3031535	+	130	75676978	-	Nwi_2794	-	hypothetical protein
2780	 64.24	0	3031658..3032770	-	370	75676979	-	Nwi_2795	-	3-isopropylmalate dehydrogenase
2781	 62.16	0	3033072..3033581	-	169	75676980	-	Nwi_2796	-	copper/Zinc superoxide dismutase
2782	 61.59	0	3033915..3035471	+	518	75676981	-	Nwi_2797	-	malonyl-CoA synthase
2783	 65.96	0	3035592..3036017	+	141	75676982	-	Nwi_2798	-	succinate dehydrogenase, cytochrome b subunit
2784	 60.54	0	3036014..3036421	+	135	75676983	-	Nwi_2799	-	succinate dehydrogenase, cytochrome b subunit
2785	 64.69	0	3036425..3038248	+	607	75676984	sdhA	Nwi_2800	-	succinate dehydrogenase flavoprotein subunit
2786	 61.43	0	3038472..3039254	+	260	75676985	sdhB	Nwi_2801	-	succinate dehydrogenase iron-sulfur subunit
2787	 68.47	+1	3039920..3041911	+	663	75676986	-	Nwi_2802	-	OmpA/MotB
2788	 62.11	0	3042012..3043241	-	409	75676987	-	Nwi_2803	-	argininosuccinate synthase
2789	 67.43	+1	3043312..3044100	-	262	75676988	-	Nwi_2804	-	phosphoesterase, PA-phosphatase related
2790	 63.94	0	3044272..3044748	-	158	75676989	-	Nwi_2805	-	hypothetical protein
2791	 61.68	0	3044785..3046068	-	427	75676990	-	Nwi_2806	-	hypothetical protein
2792	 61.02	0	3046248..3046796	-	182	75676991	-	Nwi_2807	-	hypothetical protein
2793	 63.25	0	3047161..3047541	-	126	75676992	-	Nwi_2808	-	hypothetical protein
2794	 63.07	0	3047651..3047956	-	101	75676993	phhB	Nwi_2809	-	pterin-4-alpha-carbinolamine dehydratase
2795	 55.75	-1	3048298..3048636	+	112	75676994	-	Nwi_2810	-	4Fe-4S ferredoxin, iron-sulfur binding
2796	 61.59	0	3048702..3049193	+	163	75676995	-	Nwi_2811	-	hypothetical protein
2797	 63.43	0	3049285..3051198	-	637	75676996	-	Nwi_2812	-	heat shock protein 90
2798	 60.81	0	3051635..3052300	+	221	75676997	-	Nwi_2813	-	PepSY-associated TM helix
2799	 60.23	0	3052311..3052823	+	170	75676998	-	Nwi_2814	-	hypothetical protein
2800	 63.10	0	3052984..3053796	+	270	75676999	-	Nwi_2815	-	hypothetical protein
2801	 66.67	+1	3053801..3054817	+	338	75677000	-	Nwi_2816	-	ApbE-like lipoprotein
2802	 60.02	0	3054930..3055952	-	340	75677001	-	Nwi_2817	-	tRNA-dihydrouridine synthase A
2803	 58.57	-1	3056107..3057057	-	316	75677002	-	Nwi_2818	-	integrase, catalytic region
2804	 61.88	0	3057115..3058095	-	326	75677003	-	Nwi_2819	-	helix-turn-helix, Fis-type
2805	 65.07	0	3058092..3058466	-	124	75677004	-	Nwi_2820	-	transposase IS3/IS911
2806	 59.85	0	3058571..3058834	+	87	75677005	-	Nwi_2821	-	ISBm1, transposase orfA
2807	 59.64	0	3058876..3059259	+	127	75677006	-	Nwi_2822	-	transposase, IS4
2808	 61.90	0	3059315..3059713	+	132	75677007	-	Nwi_2823	-	transposase
2809	 64.50	0	3059728..3060096	+	122	75677008	-	Nwi_2824	-	transposase, IS4
2810	 67.40	+1	3060211..3060483	-	90	75677009	-	Nwi_2825	-	hypothetical protein
2811	 67.68	+1	3060486..3061571	-	361	75677010	-	Nwi_2826	-	hypothetical protein
2812	 55.13	-2	3061624..3062334	-	236	75677011	-	Nwi_2827	-	hypothetical protein
2813	 52.25	-2	3062340..3063005	-	221	75677012	-	Nwi_2828	-	hypothetical protein
2814	 69.98	+2	3063138..3063770	-	210	75677013	-	Nwi_2829	-	hypothetical protein
2815	 66.03	0	3063767..3064078	-	103	75677014	-	Nwi_2830	-	hypothetical protein
2816	 67.86	+1	3064078..3064413	-	111	75677015	-	Nwi_2831	-	hypothetical protein
2817	 62.37	0	3064879..3065343	+	154	75677016	-	Nwi_2833	-	prophage LambdaMc01, site-specific recombinase resolvase family protein
2818	 61.20	0	3065475..3065858	+	127	75677017	-	Nwi_2834	-	hypothetical protein
2819	 65.11	0	3065862..3066695	-	277	75677018	-	Nwi_2835	-	hypothetical protein
2820	 57.85	-1	3066705..3067226	-	173	75677019	-	Nwi_2836	-	hypothetical protein
2821	 51.55	-2	3067306..3067887	-	193	75677020	-	Nwi_2837	-	hypothetical protein
2822	 59.51	0	3067887..3068654	-	255	75677021	-	Nwi_2838	-	Phage Gp37Gp68
2823	 55.84	-1	3069234..3069695	-	153	75677022	-	Nwi_2839	-	integrase, catalytic region
2824	 65.95	0	3069897..3070175	+	92	75677023	-	Nwi_2840	-	hypothetical protein
2825	 64.89	0	3070201..3071211	+	336	75677024	-	Nwi_2841	-	resolvase
2826	 64.30	0	3071202..3071708	+	168	75677025	-	Nwi_2842	-	IstB-like ATP-binding protein
2827	 62.12	0	3074650..3076608	-	652	75677026	-	Nwi_2845	-	outer membrane autotransporter barrel
2828	 67.14	+1	3077297..3079423	+	708	75677027	-	Nwi_2846	-	peptidase C14, caspase catalytic subunit p20
2829	 59.50	0	3079878..3080519	-	213	75677028	-	Nwi_2847	-	ISRm2011-2 transposase protein
2830	 60.68	0	3080471..3080821	-	116	75677029	-	Nwi_2848	-	transposase
2831	 55.64	-1	3081298..3081678	-	126	75677030	-	Nwi_2849	-	hypothetical protein
2832	 60.81	0	3081743..3082732	-	329	75677031	-	Nwi_2850	-	integrase, catalytic region
2833	 67.38	+1	3083032..3084996	+	654	75677032	-	Nwi_2851	-	hypothetical protein
2834	 65.62	0	3085190..3086434	-	414	75677033	-	Nwi_2852	-	glycosyl transferase family protein
2835	 63.96	0	3086450..3087817	-	455	75677034	-	Nwi_2853	-	Na+/H+ antiporter NhaA
2836	 60.23	0	3087931..3088629	+	232	75677035	-	Nwi_2854	-	hypothetical protein
2837	 61.49	0	3088669..3088977	+	102	75677036	-	Nwi_2855	-	hypothetical protein
2838	 59.65	0	3088981..3089493	+	170	75677037	-	Nwi_2856	-	GCN5-related N-acetyltransferase
2839	 64.13	0	3089533..3089808	+	91	75677038	-	Nwi_2857	-	hypothetical protein
2840	 62.76	0	3090054..3090386	+	110	75677039	-	Nwi_2858	-	hypothetical protein
2841	 64.14	0	3090452..3092632	+	726	75677040	-	Nwi_2859	-	ParB-like nuclease
2842	 65.45	0	3092687..3093916	+	409	75677041	-	Nwi_2860	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2843	 64.50	0	3094057..3094425	-	122	75677042	-	Nwi_2861	-	transposase, IS4
2844	 61.90	0	3094440..3094838	-	132	75677043	-	Nwi_2862	-	transposase
2845	 56.80	-1	3095047..3097812	+	921	75677044	-	Nwi_2863	-	hypothetical protein
2846	 60.53	0	3097875..3098249	+	124	75677045	-	Nwi_2864	-	transposase IS3/IS911
2847	 59.73	0	3098246..3099226	+	326	75677046	-	Nwi_2865	-	helix-turn-helix, Fis-type
2848	 61.88	0	3099378..3100358	-	326	75677047	-	Nwi_2866	-	helix-turn-helix, Fis-type
2849	 65.07	0	3100355..3100729	-	124	75677048	-	Nwi_2867	-	transposase IS3/IS911
2850	 62.18	0	3101193..3102485	-	430	75677049	-	Nwi_2868	-	hypothetical protein
2851	 63.74	0	3102475..3102816	-	113	75677050	-	Nwi_2869	-	hypothetical protein
2852	 59.34	0	3103163..3103435	+	90	75677051	-	Nwi_2870	-	hypothetical protein
2853	 62.57	0	3103444..3104322	+	292	75677052	-	Nwi_2871	-	hypothetical protein
2854	 61.90	0	3104297..3104968	+	223	75677053	-	Nwi_2872	-	hypothetical protein
2855	 61.16	0	3104952..3105659	+	235	75677054	-	Nwi_2873	-	hypothetical protein
2856	 62.98	0	3105391..3106449	+	352	75677055	-	Nwi_2874	-	hypothetical protein
2857	 57.19	-1	3106724..3107272	+	182	75677056	-	Nwi_2875	-	hypothetical protein
2858	 51.89	-2	3107347..3108009	-	220	75677057	-	Nwi_2876	-	hypothetical protein
2859	 55.52	-1	3108006..3108965	-	319	75677058	-	Nwi_2877	-	hypothetical protein
2860	 59.34	0	3109234..3109506	+	90	75677059	-	Nwi_2878	-	hypothetical protein
2861	 59.73	0	3109684..3110664	-	326	75677060	-	Nwi_2879	-	helix-turn-helix, Fis-type
2862	 60.53	0	3110661..3111035	-	124	75677061	-	Nwi_2880	-	transposase IS3/IS911
2863	 61.27	0	3111299..3113764	-	821	75677062	-	Nwi_2881	-	TonB-dependent siderophore receptor
2864	 64.88	0	3113977..3114981	-	334	75677063	-	Nwi_2882	-	FecR protein
2865	 63.78	0	3115272..3115790	-	172	75677064	-	Nwi_2883	-	fec I like protein
2866	 58.46	-1	3116136..3116744	-	202	75677065	-	Nwi_2884	-	hypothetical protein
2867	 63.91	0	3116844..3117314	-	156	75677066	-	Nwi_2885	-	MarR family transcriptional regulator
62.44	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.