IslandPathversion 1.0

IslandPath Analysis: Nitrobacter winogradskyi Nb-255



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 3.62
Nitrobacter winogradskyi Nb-255, complete genome - 1..3402093
3122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2744	 61.17	0	2999310..3000146	-	278	75676943	-	Nwi_2759	-	Sulfate ABC transporter, permease protein CysT
2745	 59.09	0	3000177..3001166	-	329	75676944	-	Nwi_2760	-	thiosulphate-binding protein
2746	 65.49	0	3001296..3002060	-	254	75676945	-	Nwi_2761	-	phosphoadenosine phosphosulfate reductase
2747	 68.41	+1	3002057..3003487	-	476	75676946	-	Nwi_2762	-	uroporphyrin-III C-methyltransferase
2748	 63.32	0	3003752..3004558	+	268	75676947	-	Nwi_2763	-	sulfate adenylyltransferase subunit 2
2749	 66.36	+1	3004593..3006518	+	641	75676948	-	Nwi_2764	-	adenylylsulfate kinase
2750	 62.76	0	3006796..3009021	+	741	75676949	-	Nwi_2765	-	malate synthase G
2751	 53.85	-2	3009136..3009291	-	51	75676950	-	Nwi_2766	-	hypothetical protein
2752	 63.69	0	3009640..3010008	+	122	75676951	-	Nwi_2767	-	hypothetical protein
2753	 60.05	0	3010259..3010681	+	140	75676952	-	Nwi_2768	-	hypothetical protein
2754	 64.06	0	3010700..3011083	-	127	75676953	-	Nwi_2769	-	hypothetical protein
2755	 65.45	0	3011103..3011348	-	81	75676954	-	Nwi_2770	-	hypothetical protein
2756	 62.08	0	3011323..3012129	-	268	75676955	-	Nwi_2771	-	two-component response regulator
2757	 56.62	-1	3012368..3012586	+	72	75676956	-	Nwi_2772	-	hypothetical protein
2758	 60.41	0	3012586..3013128	+	180	75676957	-	Nwi_2773	-	RNA polymerase sigma factor
2759	 60.34	0	3013306..3014964	-	552	75676958	-	Nwi_2774	-	HWE histidine kinase
2760	 66.59	+1	3015393..3016661	-	422	75676959	-	Nwi_2775	-	2-methylthioadenine synthetase
2761	 63.31	0	3016661..3017554	-	297	75676960	dapF	Nwi_2776	-	diaminopimelate epimerase
2762	 63.10	0	3017811..3018539	+	242	75676961	-	Nwi_2777	-	transcription activator, effector binding
2763	 67.22	+1	3018536..3019258	+	240	75676962	-	Nwi_2778	-	hypothetical protein
2764	 66.09	+1	3019454..3021004	+	516	75676963	-	Nwi_2779	-	Signal recognition particle protein
2765	 67.87	+1	3021083..3021415	+	110	75676964	rpsP	Nwi_2780	-	30S ribosomal protein S16
2766	 68.20	+1	3021428..3021949	+	173	75676965	-	Nwi_2781	-	16S rRNA processing protein RimM
2767	 67.64	+1	3022113..3022832	+	239	75676966	-	Nwi_2782	-	tRNA (guanine-N1-)-methyltransferase
2768	 62.73	0	3023053..3023433	+	126	75676967	rplS	Nwi_2783	-	50S ribosomal protein L19
2769	 58.43	-1	3023540..3023794	+	84	75676968	-	Nwi_2784	-	hypothetical protein
2770	 64.82	0	3023869..3025275	+	468	75676969	-	Nwi_2785	-	isopropylmalate isomerase large subunit
2771	 66.50	+1	3025506..3026111	+	201	75676970	-	Nwi_2786	-	hypothetical protein
2772	 63.07	0	3026228..3026533	-	101	75676971	-	Nwi_2787	-	hypothetical protein
2773	 61.05	0	3026779..3027063	-	94	75676972	-	Nwi_2788	-	hypothetical protein
2774	 64.90	0	3027261..3027599	-	112	75676973	-	Nwi_2789	-	hypothetical protein
2775	 60.70	0	3027726..3028127	+	133	75676974	-	Nwi_2790	-	hypothetical protein
2776	 58.91	0	3028211..3028816	+	201	75676975	leuD	Nwi_2791	-	isopropylmalate isomerase small subunit
2777	 61.90	0	3028966..3029616	+	216	75676976	-	Nwi_2792	-	carbonic anhydrase
2778	 60.39	0	3029712..3030746	-	344	75676977	-	Nwi_2793	-	aspartate-semialdehyde dehydrogenase
2779	 65.14	0	3031143..3031535	+	130	75676978	-	Nwi_2794	-	hypothetical protein
2780	 64.24	0	3031658..3032770	-	370	75676979	-	Nwi_2795	-	3-isopropylmalate dehydrogenase
2781	 62.16	0	3033072..3033581	-	169	75676980	-	Nwi_2796	-	copper/Zinc superoxide dismutase
2782	 61.59	0	3033915..3035471	+	518	75676981	-	Nwi_2797	-	malonyl-CoA synthase
2783	 65.96	0	3035592..3036017	+	141	75676982	-	Nwi_2798	-	succinate dehydrogenase, cytochrome b subunit
2784	 60.54	0	3036014..3036421	+	135	75676983	-	Nwi_2799	-	succinate dehydrogenase, cytochrome b subunit
2785	 64.69	0	3036425..3038248	+	607	75676984	sdhA	Nwi_2800	-	succinate dehydrogenase flavoprotein subunit
2786	 61.43	0	3038472..3039254	+	260	75676985	sdhB	Nwi_2801	-	succinate dehydrogenase iron-sulfur subunit
2787	 68.47	+1	3039920..3041911	+	663	75676986	-	Nwi_2802	-	OmpA/MotB
2788	 62.11	0	3042012..3043241	-	409	75676987	-	Nwi_2803	-	argininosuccinate synthase
2789	 67.43	+1	3043312..3044100	-	262	75676988	-	Nwi_2804	-	phosphoesterase, PA-phosphatase related
2790	 63.94	0	3044272..3044748	-	158	75676989	-	Nwi_2805	-	hypothetical protein
2791	 61.68	0	3044785..3046068	-	427	75676990	-	Nwi_2806	-	hypothetical protein
2792	 61.02	0	3046248..3046796	-	182	75676991	-	Nwi_2807	-	hypothetical protein
2793	 63.25	0	3047161..3047541	-	126	75676992	-	Nwi_2808	-	hypothetical protein
2794	 63.07	0	3047651..3047956	-	101	75676993	phhB	Nwi_2809	-	pterin-4-alpha-carbinolamine dehydratase
2795	 55.75	-1	3048298..3048636	+	112	75676994	-	Nwi_2810	-	4Fe-4S ferredoxin, iron-sulfur binding
2796	 61.59	0	3048702..3049193	+	163	75676995	-	Nwi_2811	-	hypothetical protein
2797	 63.43	0	3049285..3051198	-	637	75676996	-	Nwi_2812	-	heat shock protein 90
2798	 60.81	0	3051635..3052300	+	221	75676997	-	Nwi_2813	-	PepSY-associated TM helix
2799	 60.23	0	3052311..3052823	+	170	75676998	-	Nwi_2814	-	hypothetical protein
2800	 63.10	0	3052984..3053796	+	270	75676999	-	Nwi_2815	-	hypothetical protein
2801	 66.67	+1	3053801..3054817	+	338	75677000	-	Nwi_2816	-	ApbE-like lipoprotein
2802	 60.02	0	3054930..3055952	-	340	75677001	-	Nwi_2817	-	tRNA-dihydrouridine synthase A
2803	 58.57	-1	3056107..3057057	-	316	75677002	-	Nwi_2818	-	integrase, catalytic region
2804	 61.88	0	3057115..3058095	-	326	75677003	-	Nwi_2819	-	helix-turn-helix, Fis-type
2805	 65.07	0	3058092..3058466	-	124	75677004	-	Nwi_2820	-	transposase IS3/IS911
2806	 59.85	0	3058571..3058834	+	87	75677005	-	Nwi_2821	-	ISBm1, transposase orfA
2807	 59.64	0	3058876..3059259	+	127	75677006	-	Nwi_2822	-	transposase, IS4
2808	 61.90	0	3059315..3059713	+	132	75677007	-	Nwi_2823	-	transposase
2809	 64.50	0	3059728..3060096	+	122	75677008	-	Nwi_2824	-	transposase, IS4
2810	 67.40	+1	3060211..3060483	-	90	75677009	-	Nwi_2825	-	hypothetical protein
2811	 67.68	+1	3060486..3061571	-	361	75677010	-	Nwi_2826	-	hypothetical protein
2812	 55.13	-2	3061624..3062334	-	236	75677011	-	Nwi_2827	-	hypothetical protein
2813	 52.25	-2	3062340..3063005	-	221	75677012	-	Nwi_2828	-	hypothetical protein
2814	 69.98	+2	3063138..3063770	-	210	75677013	-	Nwi_2829	-	hypothetical protein
2815	 66.03	0	3063767..3064078	-	103	75677014	-	Nwi_2830	-	hypothetical protein
2816	 67.86	+1	3064078..3064413	-	111	75677015	-	Nwi_2831	-	hypothetical protein
2817	 62.37	0	3064879..3065343	+	154	75677016	-	Nwi_2833	-	prophage LambdaMc01, site-specific recombinase resolvase family protein
2818	 61.20	0	3065475..3065858	+	127	75677017	-	Nwi_2834	-	hypothetical protein
2819	 65.11	0	3065862..3066695	-	277	75677018	-	Nwi_2835	-	hypothetical protein
2820	 57.85	-1	3066705..3067226	-	173	75677019	-	Nwi_2836	-	hypothetical protein
2821	 51.55	-2	3067306..3067887	-	193	75677020	-	Nwi_2837	-	hypothetical protein
2822	 59.51	0	3067887..3068654	-	255	75677021	-	Nwi_2838	-	Phage Gp37Gp68
2823	 55.84	-1	3069234..3069695	-	153	75677022	-	Nwi_2839	-	integrase, catalytic region
2824	 65.95	0	3069897..3070175	+	92	75677023	-	Nwi_2840	-	hypothetical protein
2825	 64.89	0	3070201..3071211	+	336	75677024	-	Nwi_2841	-	resolvase
2826	 64.30	0	3071202..3071708	+	168	75677025	-	Nwi_2842	-	IstB-like ATP-binding protein
2827	 62.12	0	3074650..3076608	-	652	75677026	-	Nwi_2845	-	outer membrane autotransporter barrel
2828	 67.14	+1	3077297..3079423	+	708	75677027	-	Nwi_2846	-	peptidase C14, caspase catalytic subunit p20
2829	 59.50	0	3079878..3080519	-	213	75677028	-	Nwi_2847	-	ISRm2011-2 transposase protein
2830	 60.68	0	3080471..3080821	-	116	75677029	-	Nwi_2848	-	transposase
2831	 55.64	-1	3081298..3081678	-	126	75677030	-	Nwi_2849	-	hypothetical protein
2832	 60.81	0	3081743..3082732	-	329	75677031	-	Nwi_2850	-	integrase, catalytic region
2833	 67.38	+1	3083032..3084996	+	654	75677032	-	Nwi_2851	-	hypothetical protein
2834	 65.62	0	3085190..3086434	-	414	75677033	-	Nwi_2852	-	glycosyl transferase family protein
2835	 63.96	0	3086450..3087817	-	455	75677034	-	Nwi_2853	-	Na+/H+ antiporter NhaA
2836	 60.23	0	3087931..3088629	+	232	75677035	-	Nwi_2854	-	hypothetical protein
2837	 61.49	0	3088669..3088977	+	102	75677036	-	Nwi_2855	-	hypothetical protein
2838	 59.65	0	3088981..3089493	+	170	75677037	-	Nwi_2856	-	GCN5-related N-acetyltransferase
2839	 64.13	0	3089533..3089808	+	91	75677038	-	Nwi_2857	-	hypothetical protein
2840	 62.76	0	3090054..3090386	+	110	75677039	-	Nwi_2858	-	hypothetical protein
2841	 64.14	0	3090452..3092632	+	726	75677040	-	Nwi_2859	-	ParB-like nuclease
2842	 65.45	0	3092687..3093916	+	409	75677041	-	Nwi_2860	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2843	 64.50	0	3094057..3094425	-	122	75677042	-	Nwi_2861	-	transposase, IS4
62.44	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.